Genetic diversity of ectomycorrhizal Basidiomycetes from African and Indian tropical rain forests

Mycorrhiza

Volumn 17, Issue 5, 2007, Pages 415-428

  Riviere, Taiana ^a,b,h   Diedhiou, Abdallah G ^a   Diabate, Moussa ^c   Senthilarasu, G ^d   Natarajan, K ^d   Verbeken, Annemieke ^e   Buyck, Bart ^f   Dreyfus, Bernard ^a   Bena, Gilles ^a   Ba, Amadou M ^a,g  

^a LABORATOIRE DES SYMBIOSES TROPICALES ET MÉDITERRANÉENNES   (France)

^b FRENCH INSTITUTE OF PONDICHERRY   (India)

^c Institut de Recherche Agronomique de Guinée   (Guinea)

^d UNIVERSITY OF MADRAS   (India)

^e GHENT UNIVERSITY   (Belgium)

^f MUSÉUM NATIONAL D'HISTOIRE NATURELLE   (France)

^g UNIVERSITÉ DES ANTILLES ET DE LA GUYANE   (France)

^h CENTRE DE BIOLOGIE ET DE GESTION DES POPULATIONS   (France)

Author keywords

Ectomycorrhizal Basidiomycetes; Mitochondrial LrRNA gene; Tropical rain forests

Indexed keywords

FUNGAL DNA; RIBOSOME DNA; RNA 23S;

CLADISTICS; ECTOMYCORRHIZA; FUNGUS; GENETIC VARIATION; PHYLOGENY; RAINFOREST; SPECIES DIVERSITY; TAXONOMY; TROPICAL FOREST;

AFRICA; AGARICALES; ARTICLE; BASIDIOMYCETES; BIODIVERSITY; CHEMISTRY; CLASSIFICATION; DNA SEQUENCE; ECOSYSTEM; FUNGUS; GENETIC VARIABILITY; GENETICS; INDIA; ISOLATION AND PURIFICATION; MICROBIOLOGY; MOLECULAR GENETICS; MYCORRHIZA; NUCLEOTIDE SEQUENCE; PHYLOGENY; PLANT; TREE;

AFRICA; AGARICALES; BASIDIOMYCOTA; BIODIVERSITY; DNA, FUNGAL; DNA, RIBOSOMAL; ECOSYSTEM; FUNGI; INDIA; MOLECULAR SEQUENCE DATA; MYCORRHIZAE; PHYLOGENY; PLANTS; RNA, RIBOSOMAL, 23S; SEQUENCE ANALYSIS, DNA; TREES; VARIATION (GENETICS);

AFRICA; ASIA; EURASIA; GUINEA; INDIA; SOUTH ASIA; SUB-SAHARAN AFRICA; WEST AFRICA; WESTERN GHATS;

AMANITACEAE; BASIDIOMYCOTA; FUNGI; RUSSULACEAE; TRICHOLOMATACEAE;

EID: 34250852901     PISSN: 09406360     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00572-007-0117-6     Document Type: Article

References (63)

1. Alexander IJ, Högberg P (1986) Ectomycorrhizas of tropical angiospermous trees. New Phytol 102:541-549
2. Baura G, Szaro TM, Bruns TD (1992) Gastrosuillus laricinus is a recent derivative of Suillus grevilleii: molecular evidence. Mycologia 84:592-597
3. Berbee ML, Taylor JW (1993) Dating the evolutionary radiations of the true fungi. Can J Bot 71:1114-1127
4. Berbee ML, Taylor JW (2001) Fungal molecular evolution: gene trees and geologic time. In: McLaughlin DJ, McLaughlin RG, Lemke PA (eds) The Mycota VII. Part B. Systematics and evolution. Springer, Berlin, pp 229-245
5. Binder M, Hibbett DS (2002) Higher-level phylogenetic relationships of Homobasidiomycetes (Mushroom-forming fungi) inferred from four rDNA regions. Mol Phylogenet Evol 22:76-90
6. Bruns TD, Szaro TM (1992) Rate and mode differences between nuclear and mitochondrial small-subunit rRNA genes in mushrooms. Mol Biol Evol 9:836-855
7. Bruns TD, Szaro TM, Gardes M et al (1998) A sequence database for the identification of ectomycorrhizal Basidiomycetes by phylogenetic analysis. Mol Ecol 7:257-272
8. Bull JJ, Huelsenbeck PP, Cunningham CW, Swofford DL, Waddell PJ (1993) Partitioning and combining data in phylogenetic analysis. Syst Biol 42:384-397
9. Buyck B (1994a) Russula I (Russulaceae). Flore Illus Champignons Afr Cent 15:335-408
10. Buyck B (1994b) Russula II (Russulaceae). Flore Illus Champignons Afr Cent 16:411-542
11. Buyck B (1997) Russula III (Russulaceae). Flore Illus Champignons Afr Cent 17:545-597
12. Buyck B, Thoen D, Walting R (1996) Ectomycorrhizal fungi of the Guinea-Congo Region. Proc R Soc Edinb Sect B 104:313-333
13. Dahlberg A, Jonsson L, Nylund JE (1997) Species diversity and distribution of biomass above and belowground among ectomycorrhizal fungi in an old-growth Norway spruce forest in south Sweden. Can J Bot 75:1323-1335
14. Debaud JC, Marmeisse R, Gay G (1999) Intraspecific genetic variation and populations of ecomycorrhizal fungi. In: Varma AK, Hock B (eds) Mycorrhiza: structure, molecular biology and function. Springer, Berlin, pp 75-110
15. den Bakker HC, Zuccarello GC, Kuyper TH W, Noordeloos ME (2004) Evolution and host specificity in the ectomycorrhizal genus Leccinum. New Phytol 163:201-215
16. Doyle JJ (1992) Gene trees and species trees: molecular systematics as one-character taxonomy. Syst Bot 17:144-163
17. Eberhardt U (2002) Molecular analyses of the agaricoid Russulaceae: correspondence with mycorrhizal and sporocarp features in the genus Russula. Mycol Prog 1(2):201-224
18. Eberhardt U, Verbeken A (2004) Sequestrate Lactarius species from tropical Africa: L. angiocarpus sp. nov. and L. dolichocaulis comb. nov. Mycol Res 108:1042-1052
19. Egger KN (1995) Molecular analysis of ectomycorrhizal fungal communities. Can J Bot 73:S1415-S1422
20. Erland S, Jonsson T, Mahmood S, Finlay RD (1999) Below-ground ectomycorrhizal community structure in two Picea abies forests in southern Sweden. Scand J For Res 14:209-217
21. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791
22. Gardes M, Bruns TD (1993) ITS primers with enhanced specificity for Basidiomycetes-application for the identification of mycorrhizas and rusts. Mol Ecol 2:113-118
23. Gardes M, Bruns TD (1996) Community structure of ectomycorrhizal fungi in a Pinus muricata forest: above and below-ground views. Can J Bot 74:1572-1583
24. Gardes M, White TJ, Fortin J, Bruns TD, Taylor JW (1991) Identification of indigenous and introduced symbiotic fungi in ectomycorrhizas by amplification of nuclear and mitochondrial ribosomal DNA. Can J Bot 69:180-190
25. Grogan P, Baar J, Bruns TD (2000) Below-ground ectomycorrhizal community structure in a recently burned bishop pine forest. J Ecol 88:1051-1062
26. Hibbett DS, Gilbert LB, Donoghue MJ (2000) Evolutionary instability of ectomycorrhizal symbioses in Basidiomycetes. Nature 407:506-508
27. Horton TR, Bruns TD (2001) The molecular revolution in ectomycorrhizal ecology: peeking into the black-box. Mol Ecol 10:1855-1871
28. Huelsenbeck JO, Rannala B (1997) Phylogenetic methods come of age: testing hypotheses in an evolutionary context. Science 276:227-232
29. Jonsson L, Dahlberg A, Nilsson M-C, Kårén O, Zackrisson O (1999) Continuity of ectomycorrhizal fungi in self-regenerating boreal Pinus sylvestris forests studied in comparing mycobiont diversity on seedlings and mature trees. New Phytol 142:151-162
30. Jonsson L, Dahlberg A, Brandrud T-E (2000) Spatiotemporal distribution of an ectomycorrhizal community in an oligotrophic Swedish Picea abies forest subjected to experimental nitrogen addition: above and below-ground views. For Ecol Manag 132:143-156
31. Kõljalg U, Dahlberg A, Taylor AFS et al (2000) Diversity and abundance of resupinate thelephoroid fungi as ectomycorrhizal symbionts in Swedish boreal forests. Mol Ecol 9:1985-1996
32. Kõljalg U, Larsson KH, Abarenkov K et al (2005) UNITE: a database providing web-based methods for the molecular identification of ectomycorrhizal fungi. New Phytol 166:1063-1068
33. Kretzer AM, Dunham S, Molina R, Spatafora JW (2003) Microsatellite markers reveal the below ground distribution of genets in two species of Rhizopogon forming tuberculate ectomycorrhizas on Douglas fir. New Phytol 161:313-320
34. Lee SS, Alexander IJ, Watling R (1997) Ectomycorrhizas and putative ectomycorrhizal fungi of Shorea leprosula Miq. (Dipterocarpaceae). Mycorrhiza 7:63-81
35. Marx DH (1969) The influence of ectotrophic mycorrhizal fungi on the resistance of pine roots to pathogenic infections. I. Antagonism of mycorrhizal fungi to root pathogenic fungi and soil bacteria. Phytopathology 59:153-163
36. Maury-Lechon G, Curtet L (1998) Biogeography and evolutionary systematics of Dipterocarpaceae. In: Appanah S, TurnbullU MJ (eds) A review of dipterocarps taxonomy, ecology and silviculture. CIFOR, Jakarta, pp 5-44
37. Miller SL, Buyck B (2002) Molecular phylogeny of the genus Russula in Europe with a comparison of modern infrageneric classifications. Mycol Res 106:259-276
38. Molina R, Massicotte H, Trappe JM (1992) Specificity phenomena in mycorrhizal symbiosis: community-ecological consequences and practical implications. In: Allen MF (ed) Mycorrhizal functioning. Chapman & Hall, London, UK, pp 357-423
39. Moncalvo JM, Drehmel D, Vilgalys R (2000) Variation in modes and rates of evolution in nuclear and mitochondrial ribosomal DNA in the mushroom genus Amanita (Agaricales, Basidiomycota): phylogenetic implications. Mol Phylogenet Evol 16:48-63
40. Myers N, Mittermeier RA, Mittermeier CG, Da Fonseca GAB, Kent J (2000) Biodiversity hotspots for conservation priorities. Nature 403:853-858
41. Natarajan K, Senthilarasu G, Kumaresan V, Rivière T (2005) Diversity in ectomycorrhizal fungi of a dipterocarp forest in Western Ghats. Curr Sci 88(12):1893-1895
42. Newbery DM, Alexander IJ, Rother LA (1997) Phosphorus dynamics in lowland African rain forest: the influence of ectomycorrhizal trees. Ecol Monogr 67:367-409
43. Nicholas KB, Nicholas HB, Deerfield DW II (1997) GeneDoc: analysis and visualization of genetic variation. Embnet News 4:1-4
44. Onguene NA, Kuyper TW (2001) Mycorrhizal associations in the rain forest of South Cameroon. For Ecol Manag 140:277-287
45. Pascal JP, Pélissier R (1996) Structure and floristic composition of a tropical evergreen forest in south-west India. J Trop Ecol 12:191-211
46. Pélissier R, Pascal JP, Houllier F, Laborde H (1998) Impact of selective logging on the dynamics of a low elevation dense moist evergreen forest in the Western Ghats (South India). For Ecol Manag 105:107-119
47. Posada D, Crandall KA (1998) Modeltest: testing the model of DNA substitution. Bioinformatics 14:817-818
48. Redhead JF (1980) Mycorrhiza in natural tropical forests. In: Mikola P (ed) Tropical mycorrhiza research. Clarendon, Oxford, pp 127-142
49. Rivière T (2004) Biodiversity, molecular ecology and phylogeography of tropical ectomycorrhizal symbiosis. Ph.D. thesis, Université de Montpellier II, France
50. Rivière T, Natarajan K, Dreyfus B (2005) Spatial distribution of ectomycorrhizal Basidiomycete Russula subsect. Foetentinae populations in a primary dipterocarp rainforest. Mycorrhiza 16:143-148
51. Romagnesi H (1985) Les Russules d'Europe et d'Afrique du Nord. J. Cramer, Lehre (reprint with supplement)
52. Sanon KB, Bâ AM, Dexheimer J (1997) Mycorrhizal status of some fungi fruiting beneath indigenous trees in Burkina Faso. For Ecol Manag 98:61-69
53. Shimono Y, Kato M, Takamatsu S (2004) Molecular phylogeny of Russulaceae (Basidiomycetes; Russulales) from the nucleotide sequences of nuclear large subunit rDNA. Mycoscience 45:303-316
54. Singer R (1986) The Agaricales in modern taxonomy, 4th edn. Koeltz Scientific, Koeningstein
55. Singer R, Araujo IJS (1979) Litter decomposition and ectomycorrhiza in Amazonian forests: 1. A comparison of litter decomposition and ectomycorrhizal Basidiomycetes in latosol-terra firme rain forest and white podzol Campinarana. Acta Amazon 9:25-41
56. Smith SE, Read DJ (1997) Mycorrhizal symbiosis. Academic, San Diego, CA
57. Smits WTM (1992) Mycorrhizal studies in dipterocarp forests in Indonesia. In: Read DJ, Lewis DH, Fitter AH, Alexander IJ (eds) Mycorrhizas in ecosystems. Cambridge, pp 283-292
58. Swofford DL (2001) PAUP‡: phylogenetic analysis using parsimony (‡and other methods), ver. 4. Sinauer, Sunderland, MA
59. Thoen D, Bâ AM (1989) Ectomycorrhizas and putative ectomycorrhizal fungi of Afzelia africana Sm. and Uapaca guineensis Müll. Arg. in southern Senegal. New Phytol 113:549-559
60. Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680
61. Wall JD (2003) Estimating ancestral population sizes and divergence times. Genetics 163:395-404
62. Watling R, Lee SS (1995) Ectomycorrhizal fungi associated with members of the Dipterocarpaceae in Peninsular Malaysia. J Trop For Sci 7:657-669
63. White TJ, Bruns TD, Lee SS, Taylor JW (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelf DH, Sninsky JJ, White TJ (eds) PCR protocols: a guide to methods and application. Academic, San Diego, pp 315-322