Cloning and characterization of a catechol-degrading gene cluster from 3,4-dichloroaniline degrading bacterium Pseudomonas sp. KB35B

Journal of Agricultural and Food Chemistry

Volumn 55, Issue 12, 2007, Pages 4722-4727

  Kim, Young Mog ^a   Park, Kunbawui ^b   Kim, Won Chan ^c   Shin, Jae Ho ^c   Kim, Jang Eok ^c   Park, Heui Dong ^c   Rhee, In Koo ^c  

^a Pukyong National University   (South Korea)

^b National Fisheries Research and Development Institute (NFRDI)   (South Korea)

^c Kyungpook National University   (South Korea)

Author keywords

3,4 dichloroaniline; Biodegradation; Pseudomonas sp. KB35B

Indexed keywords

3,4 DICHLOROANILINE; 3,4-DICHLOROANILINE; ANILINE DERIVATIVE; BACTERIAL DNA; CATECHOL; CATECHOL DERIVATIVE; ENZYME; UNCLASSIFIED DRUG; VEGETABLE PROTEIN;

ARTICLE; BACTERIAL CHROMOSOME; GENE LIBRARY; GENETIC TRANSCRIPTION; GENETICS; METABOLISM; MULTIGENE FAMILY; OPEN READING FRAME; PLASMID; PSEUDOMONAS;

ANILINE COMPOUNDS; CATECHOLS; CHROMOSOMES, BACTERIAL; DNA, BACTERIAL; ENZYMES; GENOMIC LIBRARY; MULTIGENE FAMILY; OPEN READING FRAMES; PLANT PROTEINS; PLASMIDS; PSEUDOMONAS; TRANSCRIPTION, GENETIC;

BACTERIA (MICROORGANISMS); PSEUDOMONAS; PSEUDOMONAS SP.;

EID: 34250784440     PISSN: 00218561     EISSN: None     Source Type: Journal    
DOI: 10.1021/jf070116f     Document Type: Article

References (30)

1. Lo, H. H.; Valentovic, M.; Brown, P. I.; Rankin, G. O. Effect of chemical form, route of administration and vehicle on 3,5-dichloroaniline-induced nephrotoxicity in the Fischer 344 rat. J. Appl. Toxicol. 1994, 14, 417-422.
2. Ribeiro, R.; Lima, L. M.; Goncãlves, F.; Soares, A. M. V. M. METIER (Modular ecotoxicity tests incorporating ecological relevance) for difficult substances: Aedes aegypfi (Diptera: 632 Culicid, ae) initial module test development using 3,4-dichloroaniline. Environ. Toxicol. Chem. 1995, 14, 1241-1246.
3. Batista, S.; Silva, E. L.; Galgardo, S.; Viana, P.; Cerejeira, M. J. Evaluation of pesticide contamination of ground water in two agricultural area of portugal. Int. J. Environ. Anal. Chem. 2002, 82, 601-609.
4. Baek, K. H.; Kim, H. S.; Moon, S. H.; Lee, I. S.; Oh, H. M.; Yoon, B. D. Effects of soil types on the biodegradation of crude oil by Nocardia sp. H17-1. J. Microbiol. Biotechnol. 2004, 14, 901-905.
5. Kim, Y. M.; Park, K.; Joo, G. J.; Jeong, E. M.; Kim, J. E.; Rhee, I. K. Glutathione-dependent biotransformation of the fungicide chlorothalonil. J. Agric. Food Chem. 2004, 52, 4192-4196.
6. Ahn, T. S.; Lee, G. H.; Song, H. G. Biodegradation of phenanthrene by psychrotrophic bacteria from Lake Baikal. J. Microbiol. Biotechnol. 2005, 15, 1135-1139.
7. Choi, J. H.; Kim, T. K.; Kim, Y. M.; Kim, W. C.; Joo, G. J.; Lee, K. Y.; Rhee, I. K. Cloning and characterization of a short chain alcohol dehydrogenase gene for cyclohexanol oxidation in Rhodococcus sp. TK6. J. Microbiol. Biotechnol. 2005, 15, 1186-1196.
8. Choi, J. H.; Kim, T. K.; Kim, Y. M.; Kim, W. C.; Park, K.; Rhee, I. K. Cloning and characterization of a gene cluster for cyclohexanone oxidation in Rhodococcus sp. TK6. J. Microbiol. Biotechnol. 2006, 16, 511-518.
9. Lee, J. S.; Kang, E. J.; Kim, M. O.; Lee, D. H.; Bae, K. S.; Kim, C. K. Identification of Yarrowia lipolytica Y103 and its degradability of phenol and 4-chlorophenol. J. Microbiol. Biotechnol. 2001, 11, 112-117.
10. Na, K.; Kim, S.; Kubo, M.; Chung, S. Cloning and phylogenic analysis of two different bphC genes and bphD gene from PCG-degrading bacterium, Pseudomonas sp. strain SY5. J. Microbiol. Biotechnol. 2001, 11, 668-676.
11. Rodarie, D; Jouanneau, Y. Genetic and biochemical characterization of the biphenyl dioxygenase from Pseudomonas sp. strain B4. J. Microbiol. Biotechnol. 2001, 11, 763-771.
12. Dunbar, J.; Ticknor, L. O.; Kuske, C. R. Assessment of microbial diversity in four Southwestern United States soils by 16S rRNA gene terminal restriction fragment analysis. Appl. Environ. Microbiol. 2000, 66, 2943-2950.
13. Sanger, F.; Nicklen, S.; Coulson, A. R. DNA sequencing with chain-terminating inhibitors. Proc. Natl. Acad. Sci. U.S.A. 1977, 74, 5463-5467.
14. Kim, Y. M.; Park, K.; Choi, J. H.; Kim, J. E.; Rhee, I. K. Biotransformation of the fungicide chlorothalonil by bacterial glutathione S-transferase. J. Microbiol. Biotechnol. 2004, 14, 938-943.
15. Aoki, K.; Konohana, K.; Shinke, R.; Nishira, H. Purification and characterization of catechol 1,2-dioxygenase from aniline-assimilating Rhodococcus erythropolis AN-13. Agric. Biol. Chem. 1984, 48, 2087-2095.
16. Nakanishi, Y.; Murakami, S.; Shinke, R.; Aoki, K. Induction, purification, and characterization of catechol 2,3-dioxygenase from aniline-assimilating Pseudomonas sp. FK-8-2. Agric. Biol. Chem. 1991, 55, 1281-1289.
17. Bradford, M. M. A rapid and sensitive method for the quantification of microgram quantities of protein utilizing the principle of protein dye binding. Anal. Biochem. 1976, 72, 248-254.
18. Berns, K. I.; Thomas, C. A. Isolation of the high molecular DNA from Haemophilus influenzae. J. Mol. Biol. 1965, 11, 476-490.
19. Cladera, A. M.; Bennasar, A.; Barcelo, M.; Lalucat, J.; García-Valdés, E. Comparative genetic diversity of Pseudomonas stutzeri genomovars, clonal structure, and phylogeny of the species. J. Bacteriol. 2004, 186, 5239-5248.
20. Sambrook, J.; Fritch, E. F.; Maniatis, T. Molecular Cloning: A Laboratory Manual, 2nd ed.; Cold Spring Harbor Laboratory Press: Cold Spring Harbor, NY, 1989.
21. Parker, J. D.; Rabinovitch, P. S.; Burmer, G. C. Targeted gene walking polymerase chain reaction. Nucleic Acids Res. 1991, 19, 3055-3060.
22. Altschul, S. F.; Madden, T. L.; Schaffer, A. A.; Zhang, J.; Zhang, Z.; Miller, W.; Lipman, D. J. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res. 1997, 25, 3389-3402.
23. Fukumori, F.; Saint, C. P. Nucleotide sequences and regulational analysis of genes involved in conversion of aniline to catechol in Pseudomonas putida UCC22(pTDN1). J. Bacteriol. 1997, 179, 399-408.
24. Sota, M.; Yano, H.; Ono, A.; Miyazaki, R.; Ishii, H.; Genka, H.; Top, E. M.; Tsuda, M. Genomic and functional analysis of the IncP-9 naphthalene- catabolic plasmid NAH7 and its transposon Tn4655 suggests catabolic gene spread by a tyrosine recombinase. J. Bacteriol. 2006, 188, 4057-4067.
25. Li, W.; Shi, J.; Wang, X.; Han, Y.; Tong, W.; Ma, L.; Liu, B.; Cai, B. Complete nucleotide sequence and organization of the naphthalene catabolic plasmid pND6-1 from Pseudomonas sp. strain ND6. Gene 2004, 336, 231-240.
26. Dennis, J. J.; Zylstra, G. J. Complete sequence and genetic organization of pDTG1, the 83 kilobase naphthalene degradation plasmid from Pseudomonas putida strain NCIB 9816-4. J. Mol. Biol. 2004, 341, 753-768.
27. Bosch, R.; García-Valdés, E.; Moore, E. R. B. Complete nucleotide sequence and evolutionary significance of a chromosomally encoded naphthalene-degradation tower pathway from Pseudomonas stutzeri AN10. Gene 2000, 245, 65-74.
28. Lauf, U.; Müller, C.; Herrmann, H. The transposable elements resident on the plasmids of Pseudomonas putida strain H, Tn5501 and Tn5502, are cryptic transposons of the Tn3 family. Mol. Gen. Genet. 1998, 259, 674-678.
29. Grimm, A. C.; Harwood, C. S. NahY, a catabolic plasmid-encoded receptor required for chemotaxis of Pseudomonas putida to the aromatic hydrocarbon naphthalene. J. Bacteriol. 1999, 181, 3310-3316.
30. Williams, P. A.; Sayers, J. R. The evolution of pathways for aromatic hydrocarbon oxidation in Pseudomonas. Biodegradation 1994, 5, 195-217.