Cloning and phylogenetic analysis of two different bphC genes and bphD gene from PCB-degrading bacterium, Pseudomonas sp. strain SY5

Journal of Microbiology and Biotechnology

Volumn 11, Issue 4, 2001, Pages 668-676

  Na, K ^a   Kim, S ^a   Kubo, M ^a   Chung, S ^a  

^a Chonnam National University   (South Korea)

Author keywords

bphC; bphD; Dioxygenase; Hydrolase; PCBs; SY5

Indexed keywords

2 HYDROXY 6 OXO 6 PHENYLHEXA 2,4 DIENOATE HYDROLASE; 2,3 DIHYDROXYBIPHENYL 1,2 DIOXYGENASE; AMINO ACID; AROMATIC COMPOUND; HYDROLASE; NUCLEOTIDE; OXYGENASE; POLYCHLORINATED BIPHENYL; UNCLASSIFIED DRUG;

ARTICLE; BACTERIUM ISOLATION; BIODEGRADATION; CATALYSIS; CONTROLLED STUDY; GOVERNMENT; MOLECULAR CLONING; MOLECULAR HYBRIDIZATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PSEUDOMONAS; RHODOCOCCUS; SEQUENCE ANALYSIS; SEWAGE; WAUTERSIA EUTROPHA;

ALCALIGENES; BACTERIA (MICROORGANISMS); PSEUDOMONAS; PSEUDOMONAS SP.; RHODOCOCCUS; RHODOCOCCUS RHODOCHROUS; WAUTERSIA EUTROPHA;

EID: 0034802189     PISSN: 10177825     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (39)

1. Three different 2,3-dihydroxybiphenyl 1,2-dioxygenase genes in the Gram-positive polychlorobiphenyl-degrading bacterium Rhodococcus globerulus P6
2. Analysis of three 2,3-dihydroxybiphenyl 1,2-dioxygenase found in Rhodococcus globerulus P6
3. Cloning of a gene cluster encoding biphenyl and chlorobiphenyl degradation in Pseudomonas pseudoalcaligenes
4. Reaction characteristics of 4-methylcatechol 2,3-dioxygenase from Pseudomonas putida SU10
5. Crystal structure of the biphenyl-cleaving extradiol dioxygenase from a PCB-degrading Pseudomonad
6. Studies on transformation of Escherichia coli with plasmids
7. Identification of an alternative 2,3-dihydroxybiphenyl 1,2-dioxygenase in Rhodococcus sp. strain RHA1 and cloning of the gene
8. Pseudomonas putida KF715 bphABCD operon encoding biphenyl and polychlorinated biphenyl degradation: Cloning, analysis, and expression in soil bacteria
9. Unidirectional digestion with exonuclease III creates targeted breakpoints for DNA sequencing
10. Genetic analysis of a Pseudomonas locus encoding a pathway for biphenyl/polychlorinated biphenyl degradation
11. Purification of 2,3-dihydroxybiphenyl 1,2-dioxygenase from Pseudomonas putida OU83 and characterization of the gene (bphC)
12. Genetic structures of the genes encoding 2,3-dihydroxybiphenyl 1,2-dioxygenase and 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid hydrolase from biphenyl and 4-chlorobiphenyl-degrading Pseudomonas sp. strain DJ-12
13. Cloning and sequencing of two tandem genes involved in degradation of 2,3-dihydroxybiphenyl to benzoic acid in the polychlorinated biphenyl-degrading soil bacterium Pseudomonas sp. strain KKS102
14. Three of the seven bphC genes of Rhodococcus erythropolis TA421, isolated from a termite ecosystem, are located on an indigenous plasmid associated with biphenyl degradation
15. Cloning of New Rhodococcus Extradiol Dioxygenase Genes and Study of their Distribution in Different Rhodococcus Strains
16. Characterization of the pcbD gene encoding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase from Pseudomonas sp. P20
17. Recombination of the bph (Biphenyl) catabolic genes from plasmid pWW100 and their deletion during growth on benzoate
18. Multiple genes encoding 2,3-dihydroxybiphenyl 1,2-dioxygenase in the Gram-positive polychlorinated biphenyl-degrading bacterium Rhodococcus erythropolis TA421, isolated from a termite ecosystem
19. Characterization of biphenyl catabolic genes of Gram-positive polychlorinated biphenyl degrader Rhodococcus sp. strain RHA1
20. Genetic organization of the bph gene cluster of transposon Tn4371, encoding enzymes for the degradation of biphenyl and 4-chlorobiphenyl compounds
21. Characterization of the gene encoding catechol 2,3-dioxygenase of Alcaligenes sp. KF711: Overexpression, enzyme purification, and nucleotide sequencing
22. Isolation and characterization of polychlorinated biphenyls (PCBs) degrading bacteria from a municipal sewage treatment plant
23. Characterization of PCB-degrading bacteria immobilized in polyurethane foam
24. Extradiol cleavage of two-ring structures of biphenyl and indole oxidation by biphenyl dioxygenase in Commamonas acidovorans
25. TREEVIEW: An application to display phylogenetic trees on personal computers
26. Purification and characterization of 2,3-dihydroxybiphenyl dioxygenase form recombinant E. coli CK1092
27. Induction by carvone of the polychlorinated biphenyl (PCB) - Degradative pathway in Alcaligenes eutrophus H850 and its molecular monitoring
28. Catalytic properties of the 3-chlorocatechol-oxidizing 2,3-dihydroxybiphenyl 1,2-dioxygenase from Sphingomonas sp. Strain BN6
29. DNA sequencing with chain-terminating inhibitors
30. Cloning of genes involved in carbazole degradation of Pseudomonas sp. strain CA10: Nucleotide sequences of genes and characterization of meta-cleavage enzymes and hydrolase
31. Three-dimensional structures of free form and two substrate complexes of an extradiol ring-cleavage type dioxygenase, the BphC enzyme from Pseudomonas sp. strain KKS102
32. Identification of a catabolic transposon, Tn4371, carrying biphenyl and 4-chlorobiphenyl degradation genes in Alcaligenes eutrophus A5
33. Analysis of bph operon from the polychlorinated biphenyl-degrading strain of Pseudomonas pseudoalcaligenes KF707
34. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting positive-specific gap penalties and weigh matrix choice
35. Molecular mechanisms of genetic adaptation to xenobiotic compounds
36. Two nearly identical aromatic compound hydrolase genes in a strong polychlorinated biphenyl degrader, Rhodococcus sp. strain RHA1
37. Improved M13 phage cloning vectors and host strains: Nucleotide sequences of the M13 mp18 and pUC19 vectors