메뉴 건너뛰기




Volumn 176, Issue 2, 2007, Pages 1363-1366

Fast and accurate estimation of the population-scaled mutation rate, θ, from microsatellite genotype data

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; GENOTYPE; HOMOZYGOSITY; MATHEMATICAL MODEL; MUTATION RATE; POPULATION BIOLOGY; POPULATION GENETICS; PRIORITY JOURNAL; STATISTICAL SIGNIFICANCE;

EID: 34250779026     PISSN: 00166731     EISSN: 00166731     Source Type: Journal    
DOI: 10.1534/genetics.105.049080     Document Type: Article
Times cited : (18)

References (19)
  • 1
    • 0035836728 scopus 로고    scopus 로고
    • Maximum likelihood estimation of a migration matrix and effective population sizes in n subpopulations by using a coalescent approach
    • BEERLI, P., and J. FELSENSTEIN, 2001 Maximum likelihood estimation of a migration matrix and effective population sizes in n subpopulations by using a coalescent approach. Proc. Natl. Acad. Sci. USA 98(8): 4563-4568.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , Issue.8 , pp. 4563-4568
    • BEERLI, P.1    FELSENSTEIN, J.2
  • 2
    • 0038032028 scopus 로고    scopus 로고
    • Dinucleotide repeats in the drosophila and human genomes have complex, length-dependent mutation processes
    • CALABRESE, P., and R. DURRETT, 2003 Dinucleotide repeats in the drosophila and human genomes have complex, length-dependent mutation processes. Mol. Biol. Evol. 20: 715-725.
    • (2003) Mol. Biol. Evol , vol.20 , pp. 715-725
    • CALABRESE, P.1    DURRETT, R.2
  • 3
    • 3042700117 scopus 로고    scopus 로고
    • Evidence for substantial fine-scale variation in recombination rates across the human genome
    • CRAWFORD, D., T. BHANGALE, N. LI, G. HELLENTHAL, M. RIEDER et al., 2004 Evidence for substantial fine-scale variation in recombination rates across the human genome. Nat. Genet. 36: 700-706.
    • (2004) Nat. Genet , vol.36 , pp. 700-706
    • CRAWFORD, D.1    BHANGALE, T.2    LI, N.3    HELLENTHAL, G.4    RIEDER, M.5
  • 4
    • 0029559462 scopus 로고
    • Coalescents and genealogical structure under neutrality
    • DONNELLY, P., and S. TAVARÉ, 1995 Coalescents and genealogical structure under neutrality. Annu. Rev. Genet. 29: 401-421.
    • (1995) Annu. Rev. Genet , vol.29 , pp. 401-421
    • DONNELLY, P.1    TAVARÉ, S.2
  • 5
    • 0015310384 scopus 로고
    • The sampling theory of selectively neutral alleles
    • EWENS, W. J., 1972 The sampling theory of selectively neutral alleles. Theor. Popul. Biol. 3: 87-112.
    • (1972) Theor. Popul. Biol , vol.3 , pp. 87-112
    • EWENS, W.J.1
  • 6
    • 0035675042 scopus 로고    scopus 로고
    • Estimating recombination rates from population genetic data
    • FEARNHEAD, P. N., and P. DONNELLY, 2001 Estimating recombination rates from population genetic data. Genetics 159: 1299-1318.
    • (2001) Genetics , vol.159 , pp. 1299-1318
    • FEARNHEAD, P.N.1    DONNELLY, P.2
  • 7
    • 0036433716 scopus 로고    scopus 로고
    • Approximate likelihood methods for estimating local recombination rates
    • FEARNHEAD, P. N., and P. DONNELLY, 2002 Approximate likelihood methods for estimating local recombination rates. J. R. Stat. Soc. Ser. B 64: 657-680.
    • (2002) J. R. Stat. Soc. Ser. B , vol.64 , pp. 657-680
    • FEARNHEAD, P.N.1    DONNELLY, P.2
  • 8
    • 84972539388 scopus 로고
    • Ancestral inference in population genetics
    • GRIFFITHS, R. C., and S. TAVARÉ, 1994a Ancestral inference in population genetics. Stat. Sci. 9: 307-319.
    • (1994) Stat. Sci , vol.9 , pp. 307-319
    • GRIFFITHS, R.C.1    TAVARÉ, S.2
  • 9
    • 34548452457 scopus 로고
    • Simulating probability distributions in the coalescent
    • GRIFFITHS, R. C., and S. TAVARÉ, 1994b Simulating probability distributions in the coalescent. Theor. Popul. Biol. 46: 131-159.
    • (1994) Theor. Popul. Biol , vol.46 , pp. 131-159
    • GRIFFITHS, R.C.1    TAVARÉ, S.2
  • 10
    • 0035692320 scopus 로고    scopus 로고
    • Two-locus sampling distribution and their application
    • HUDSON, R. R., 2001 Two-locus sampling distribution and their application. Genetics 159: 1805-1817.
    • (2001) Genetics , vol.159 , pp. 1805-1817
    • HUDSON, R.R.1
  • 11
    • 22144472966 scopus 로고    scopus 로고
    • Stepwise mutation likelihood computation by sequential importance sampling in subdivided population models
    • IORIO, M. D., R. C. GRIFFITHS, R. LEBLOIS and F. ROUSSET, 2005 Stepwise mutation likelihood computation by sequential importance sampling in subdivided population models. Theor. Popul. Biol. 68: 41-53.
    • (2005) Theor. Popul. Biol , vol.68 , pp. 41-53
    • IORIO, M.D.1    GRIFFITHS, R.C.2    LEBLOIS, R.3    ROUSSET, F.4
  • 12
    • 0031916646 scopus 로고    scopus 로고
    • Signatures of population expansion in microsatellite repeat data
    • KIMMEL, M., R. CHAKRABORTY, J. P. KING, M. BAMSHAD, W. S. WATKINS et al., 1998 Signatures of population expansion in microsatellite repeat data. Genetics 148: 1921-1930.
    • (1998) Genetics , vol.148 , pp. 1921-1930
    • KIMMEL, M.1    CHAKRABORTY, R.2    KING, J.P.3    BAMSHAD, M.4    WATKINS, W.S.5
  • 13
    • 0029027992 scopus 로고
    • Estimating effective population size and mutation rate from sequence data using Metropolis-Hastings sampling
    • KUHNER, M. K., J. YAMATO and J. FELSENSTEIN, 1995 Estimating effective population size and mutation rate from sequence data using Metropolis-Hastings sampling. Genetics 140: 1421-1430.
    • (1995) Genetics , vol.140 , pp. 1421-1430
    • KUHNER, M.K.1    YAMATO, J.2    FELSENSTEIN, J.3
  • 14
    • 0347361674 scopus 로고    scopus 로고
    • Modeling linkage disequilibrium, and identifying recombination hotspots using SNP data
    • LI, N., and M. STEPHENS, 2003 Modeling linkage disequilibrium, and identifying recombination hotspots using SNP data. Genetics 165: 2213-2233.
    • (2003) Genetics , vol.165 , pp. 2213-2233
    • LI, N.1    STEPHENS, M.2
  • 15
    • 0036199914 scopus 로고    scopus 로고
    • A coalescent-based method for detecting and estimating recombination from gene sequences
    • MCVEAN, G., P. AWADALLA and P. FEARNHEAD, 2002 A coalescent-based method for detecting and estimating recombination from gene sequences. Genetics 160: 1231-1241.
    • (2002) Genetics , vol.160 , pp. 1231-1241
    • MCVEAN, G.1    AWADALLA, P.2    FEARNHEAD, P.3
  • 16
    • 2142773942 scopus 로고    scopus 로고
    • The fine-scale structure of recombination rate variation in the human genome
    • MCVEAN, G. A. T., S. R. MYERS, S. HUNT, P. DELOUKAS, D. R. BENTLEY et al., 2004 The fine-scale structure of recombination rate variation in the human genome. Science 304: 581-584.
    • (2004) Science , vol.304 , pp. 581-584
    • MCVEAN, G.A.T.1    MYERS, S.R.2    HUNT, S.3    DELOUKAS, P.4    BENTLEY, D.R.5
  • 17
    • 0030904506 scopus 로고    scopus 로고
    • A likelihood approach to population samples of microsatellite alleles
    • NIELSEN, R., 1997 A likelihood approach to population samples of microsatellite alleles. Genetics 146: 711-716.
    • (1997) Genetics , vol.146 , pp. 711-716
    • NIELSEN, R.1
  • 18
    • 0034354581 scopus 로고    scopus 로고
    • Inference in molecular population genetics
    • STEPHENS, M., and P. DONNELLY, 2000 Inference in molecular population genetics. J. R. Stat. Soc. Ser. B 62: 605-655.
    • (2000) J. R. Stat. Soc. Ser. B , vol.62 , pp. 605-655
    • STEPHENS, M.1    DONNELLY, P.2
  • 19
    • 0031669749 scopus 로고    scopus 로고
    • Genealogical inference from microsatellite data
    • WILSON, I. J., and D. J. BALDING, 1998 Genealogical inference from microsatellite data. Genetics 150: 499-510.
    • (1998) Genetics , vol.150 , pp. 499-510
    • WILSON, I.J.1    BALDING, D.J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.