Devosia insulae sp. nov., isolated from soil, and emended description of the genus Devosia

International Journal of Systematic and Evolutionary Microbiology

Volumn 57, Issue 6, 2007, Pages 1310-1314

  Yoon, Jung Hoon ^a   Kang, So Jung ^a   Park, Sooyeon ^a   Oh, Tae Kwang ^a  

^a Korea Research Institute of Bioscience and Biotechnology (KRIBB)   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

FATTY ACID; HYDROXY FATTY ACID; RNA 16S; SODIUM CHLORIDE; UBIDECARENONE;

ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATION; BOOTSTRAPPING; CHEMOTAXONOMY; CONTROLLED STUDY; DEVOSIA INSULAE; DNA DNA HYBRIDIZATION; FATTY ACID ANALYSIS; GENE SEQUENCE; GRAM NEGATIVE AEROBIC RODS AND COCCI; KOREA; MICROBIAL MORPHOLOGY; NEIGHBOR JOINING METHOD; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PHENOTYPE; PHYLOGENETIC TREE; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SOIL MICROFLORA; SPECIES DIFFERENCE; TAXONOMIC RANK;

AEROBIOSIS; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; GENES, RRNA; HYDROGEN-ION CONCENTRATION; HYPHOMICROBIACEAE; KOREA; LOCOMOTION; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID; SODIUM CHLORIDE; SOIL MICROBIOLOGY; TEMPERATURE; UBIQUINONE;

BACTERIA (MICROORGANISMS); DEVOSIA; NEGIBACTERIA;

EID: 34250757737     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.65028-0     Document Type: Article

References (18)

1. Cowan, S. T. & Steel, K. J. (1965). Manual for the Identification of Medical Bacteria. London: Cambridge University Press.
2. Komagata, K & Suzuki, K (1987). Lipid and cell wall analysis in bacterial systematics. Methods Microbiol 19, 161-203.
3. Lanyi, B. (1987). Classical and rapid identification methods for medically important bacteria. Methods Microbiol 19, 1-67.
4. Lee, K.-B., Liu, C.-T, Anzai, Y., Kim, H, Aono, T. & Oyaizu, H. (2005). The hierarchical system of the 'Alphaproteobacteria': description of Hyphomonadaceae fam. nov., Xanthobacteraceae fam. nov. and Erythrobacteraceae fam. nov. Int J Syst Evol Microbiol 55, 1907-1919.
5. Nakagawa, Y., Sakane, T. & Yokota, A. (1996). Transfer of " Pseudomonas riboflavina" (Foster 1944), a gram-negative, motile rod with long-chain 3-hydroxy fatty acids, to Devosia riboflaiina gen. nov., sp. nov., nom. rev. Int J Syst Bacteriol 46, 16-22.
6. Rivas, R., Willems, A., Subba-Rao, N. S., Mateos, P. F, Dazzo, F. B., Kroppenstedt, R. M., Martinez-Molina, E., Gillis, M. & Velázquez, E. (2003). Description of Devosia neptuniae sp. nov. that nodulates and fixes nitrogen in symbiosis with Neptunia natans, an aquatic legume from India. Syst Appl Microbiol 26, 47-53.
7. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
8. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
9. Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125-128.
10. Vanparys, B., Heylen, K., Lobbe, L & Do Vos, P. (2005). Devosia limi sp. nov., isolated from a nitrifying inoculum. Int J Syst Evol Microbiol 55, 1997-2000.
11. Yoo, S.-H, Weon, H. Y., Vim, B. Y., Hong, S-B, Kwon, S.-W., Cho, Y.-H., Go, S.-J. & Stackebrandt E. (2006). Devosia soli sp. nov., isolated from greenhouse soil in Korea. Int J Syst Evol Microbiol 56, 2689-2692.
12. Yoon, J.-H., Kim, H., Kim, S.-B., Kim, H.-J, Kim, W. Y., Lee, S. T., Goodfellow, M. & Park Y.-H. (1996). Identification of Saccharomonospora strains by the use of genomic DNA fragments and rRNA gene probes. Int J Syst Bacteriol 46, 502-505.
13. Yoon, J.-H., Lee, S. T. & Park, Y.-H. (1998). Inter- and intraspecific phylogenetic analysis of the genus Nocardioides and related taxa based on 16S rRNA gene sequences. Int J Syst Bacteriol 48, 187-194.
14. Yoon, J.-H., Kong, K. H. & Park, Y.-H. (2003). Psychrobacter jeotgali sp. nov., isolated from jeotgal, a traditional Korean fermented seafood. Int J Syst Evol Microbiol 53, 449-454.
15. Yoon, J.-H., Kong, S.-J., Lee, S.-Y., Lee, M.-H. & Oh, T.-K. (2005a) Virgibacillus dokdonensis sp. nov., isolated from a Korean island, Dokdo, located at the edge of the East Sea in Korea. Int J Syst Evol Microbiol 55, 1833-1837.
16. Yoon, J.-H., Kang, S.-J, Lee, C.-H. & Oh, T.-K. (2005b). Dokdonia donghaensis gen. nov., sp. nov., isolated from sea water. Int J Syst Evol Microbiol 55, 2323-2328.
17. Yoon, J.-H., Kong, S.-J. & Oh, T.-K. (2006a). Dokdonella koreensis gen. nov., sp. nov., isolated from soil. Int J Syst Evol Microbiol 56, 145-150.
18. Yoon, J.-H., Kong, S.-J. & Oh, T.-K (2006b). Variavorax dokdonensis sp. nov., isolated from soil. Int J Syst Evol Microbiol 56, 811-814.