Clostridium aestuarii sp. nov., from tidal flat sediment

International Journal of Systematic and Evolutionary Microbiology

Volumn 57, Issue 6, 2007, Pages 1315-1317

  Kim, Seil ^a   Jeong, Hyunyoung ^a   Chun, Jongsik ^a  

^a Seoul National University   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

BUTYRIC ACID; GLYCEROL; PROPIONIC ACID; RNA 16S;

ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATION; CLOSTRIDIALES; CLOSTRIDIUM; CLOSTRIDIUM AESTUARII; CLOSTRIDIUM BUTYRICUM; CLOSTRIDIUM GANGHWENSE; CLUSTER ANALYSIS; CONTROLLED STUDY; GENE SEQUENCE; KOREA; MOLECULAR PHYLOGENY; NEIGHBOR JOINING METHOD; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENETIC TREE; PRIORITY JOURNAL; SEDIMENT; SEQUENCE ANALYSIS; SPECIES DIFFERENCE; TAXONOMIC RANK;

ANAEROBIOSIS; BACTERIAL TYPING TECHNIQUES; BUTYRIC ACID; CLOSTRIDIUM; DNA, BACTERIAL; DNA, RIBOSOMAL; FERMENTATION; GENES, RRNA; GEOLOGIC SEDIMENTS; GLUCOSE; GLYCEROL; KOREA; LOCOMOTION; MOLECULAR SEQUENCE DATA; PHYLOGENY; PROPIONIC ACIDS; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID; SODIUM CHLORIDE; SPORES, BACTERIAL; WATER MICROBIOLOGY;

BACTERIA (MICROORGANISMS); CLOSTRIDIA; CLOSTRIDIALES; CLOSTRIDIUM; CLOSTRIDIUM BUTYRICUM; CLOSTRIDIUM GANGHWENSE;

EID: 34250702262     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.64428-0     Document Type: Article

References (21)

1. Choi, D. H., Kim, Y. G., Hwang, C. Y., Yi, H., Chun, J. & Cho, B. C. (2006). Tenacibaculum litoreum sp. nov., isolated from tidal flat sediment. Int J Syst Evol Microbiol 56, 635-640.
2. Chun, J. S. & Goodfellow, M. (1995). A phylogenetic analysis of the genus Nocardia with 16S rRNA gene sequences. Int J Syst Bacteriol 45, 240-245.
3. Chun, J., Bae, K. S., Moon, E. Y, Jung, S. O., Lee, H. K & Kim, S. J. (2000). Nocardiopsis kunsanensis sp nov., a moderately halophilic actinomycete isolated from a saltern. Int J Syst Evol Microbiol 50, 1909-1913.
4. Collins, M. D., Lawson, P. A., Willems, A., Cordoba, J. J., Fernandez-Garayzabal, J., Garcia, P., Cai, J., Hippe, H. & Farrow, J. A. (1994). The phylogeny of the genus Clostridium: Proposal of five new genera and eleven new species combinations. Int J Syst Bacteriol 44, 812-826.
5. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: A maximum likelihood approach. J Mol Evol 17, 368-376.
6. Felsenstein, J. (1985). Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39, 783-791.
7. Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
8. Fitch, W. M. & Margoliash, E. (1967). Construction of phylogenetic trees. Science 155, 279-284.
9. Hernandez-Eugenio, G, Fardeau, M. L., Cayol, J. L. A., Patel, B. K. C., Thomas, P., Macarie, H., Garcia, J. L. & Ollivier, B. (2002). Clostridium thiosulfatireducens sp. nov., a proteolytic, thiosulfate- and sulfur-reducing bacterium isolated from an upflow anaerobic sludge blanket (UASB) reactor. Int J Syst Evol Microbiol 52, 1461-1468.
10. Jeon, Y. S., Chung, H., Park, S., Hur, I., Lee, J. H. & Chun, J. (2005). jPHYDIT: A JAVA-based integrated environment for molecular phylogeny of ribosomal RNA sequences. Bioinformatics 21, 3171-3173.
11. Johnson, M. J., Thatcher, E. & Cox, M. E. (1995). Techniques for controlling variability in gram staining of obligate anaerobes. J Clin Microbiol 33, 755-758.
12. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, pp. 21-132. Edited by H. N. Munro. New York: Academic Press.
13. Kim, B. S., Oh, H. M., Kang, H., Park S. S. & Chun, J. (2004). Remarkable bacterial diversity in the tidal flat sediment as revealed by 16S rDNA analysis. J Microbiol Biotechnol 14, 205-211.
14. Kim, B. S., Oh, H. M., Kang, H. & Chun, J. (2005). Archaeal diversity in tidal flat sediment as revealed by 16S rDNA analysis. J Microbiol 43, 144-151.
15. Kim, S., Jeong, H., Kim, S. & Chun, J. (2006). Clostridium ganghwense sp. nov., isolated from tidal flat sediment. Int J Syst Evol Microbiol 56, 691-693.
16. Mountfort, D. O., Rainey, F. A., Burghardt, J. & Stackebrandt, E. (1994). Clostridium grantii sp. nov., a new obligately anaerobic, alginolytic bacterium isolated from mullet gut. Arch Microbiol 162, 173-179.
17. Park, Y. D., Baik, K. S., Yi, H., Bae, K. S. & Chun, J. (2005 . Pseudo-alteromonas byunsanensis sp. nov., isolated from tidal flat sediment in Korea. Int J Syst Evol Microbiol 55, 2519-2523.
18. Powers, E. M. (1995). Efficacy of the Ryu nonstaining KOH technique for rapidly determining gram reactions of food-borne and waterborne bactena and yeasts. Appl Environ Microbiol 61, 3756-3758.
19. Saitou, N. & Nei, M. (1987). The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol 4 406-425.
20. Swofford, D. L. (1998). PAUP*: Phylogenetic analysis using parsimony (* and other methods), version 4.0. Sunderland, MA: Sinauer Associates.
21. Yi, H. & Chun, J. (2006). Thalassobius aestuarii sp. nov., isolated from tidal flat sediment. J Microbiol 44, 171-176.