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Volumn 21, Issue 14, 2005, Pages 3171-3173

jPHYDIT: A JAVA-based integrated environment for molecular phylogeny of ribosomal RNA sequences

Author keywords

[No Author keywords available]

Indexed keywords

RIBOSOME RNA;

EID: 25144446363     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/bti463     Document Type: Article
Times cited : (177)

References (9)
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    • Cannone, J.J.1
  • 2
    • 13444304367 scopus 로고    scopus 로고
    • The Ribosomal Database Project (RDP-II): Sequences and tools for high-throughput rRNA analysis
    • (Database issue)
    • Cole,J.R. et al. (2005) The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis. Nucleic Acids Res., 33(Database issue), D294-D296.
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    • Cole, J.R.1
  • 3
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    • DCSE, an interactive tool for sequence alignment and secondary structure research
    • De Rijk,P. and De Wachter,R. (1993) DCSE, an interactive tool for sequence alignment and secondary structure research. Comput. Appl. Biosci., 9, 735-740.
    • (1993) Comput. Appl. Biosci. , vol.9 , pp. 735-740
    • De Rijk, P.1    De Wachter, R.2
  • 4
    • 0030034071 scopus 로고    scopus 로고
    • Conserved sequence motifs, alignment, and secondary structure for the third domain of animal 12S rRNA
    • Hickson,R.E. et al. (1996) Conserved sequence motifs, alignment, and secondary structure for the third domain of animal 12S rRNA. Mol. Biol. Evol., 13, 150-169.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 150-169
    • Hickson, R.E.1
  • 5
    • 0027998116 scopus 로고
    • Bacterial phylogeny based on 16S and 23S rRNA sequence analysis
    • Ludwig,W. and Schleifer,K.H. (1994) Bacterial phylogeny based on 16S and 23S rRNA sequence analysis. FEMS Microbiol. Rev., 15, 155-173.
    • (1994) FEMS Microbiol. Rev. , vol.15 , pp. 155-173
    • Ludwig, W.1    Schleifer, K.H.2
  • 6
    • 0023984847 scopus 로고
    • Optimal alignments in linear space
    • Myers,E.W. and Miller,W. (1988) Optimal alignments in linear space. Comput. Appl. Biosci., 4, 11-17.
    • (1988) Comput. Appl. Biosci. , vol.4 , pp. 11-17
    • Myers, E.W.1    Miller, W.2
  • 7
    • 0030203863 scopus 로고    scopus 로고
    • TreeView: An application to display phylogenetic trees on personal computers
    • Page,R.D. (1996) TreeView: An application to display phylogenetic trees on personal computers. Comput. Appl. Biosci., 12, 357-358.
    • (1996) Comput. Appl. Biosci. , vol.12 , pp. 357-358
    • Page, R.D.1
  • 8
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou,N. and Nei,M. (1987) The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol., 4, 406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 9
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    • (2004) Nucleic Acids Res. , vol.32
    • Wuyts, J.1


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