Nonrandom variations in human cancer ESTs indicate that mRNA heterogeneity increases during carcinogenesis

Proceedings of the National Academy of Sciences of the United States of America

Volumn 104, Issue 18, 2007, Pages 7522-7527

  Brulliard, Marie ^c   Lorphelin, Dalia ^a   Collignon, Olivier ^a,b   Lorphelin, Walter ^a   Thouvenot, Benoit ^a   Gothié, Emmanuel ^a   Jacquenet, Sandrine ^a   Ogier, Virginie ^a   Roitel, Olivier ^a   Monnez, Jean Marie ^b   Vallois, Pierre ^b   Yen, Frances T ^c   Poch, Olivier ^d   Guenneugues, Marc ^e   Karcher, Gilles ^f   Oudet, Pierre ^d,e   Bihain, Bernard E ^a  

^a Genclis SAS   (France)

^b UNIVERSITÉ HENRI POINCARÉ NANCY 1   (France)

^c UNIVERSITÉ DE LORRAINE   (France)

^d INSTITUT DE GÉNÉTIQUE ET DE BIOLOGIE MOLÉCULAIRE ET CELLULAIRE   (France)

^e HÔPITAL DE HAUTEPIERRE   (France)

^f UNIVERSITY HOSPITAL OF NANCY   (France)

Author keywords

Bioinformatics; Oncology; Transcription

Indexed keywords

DNA; DNA DIRECTED RNA POLYMERASE; MESSENGER RNA; VIMENTIN;

ARTICLE; BIOINFORMATICS; CANCER CELL; CARCINOGENESIS; CONTROLLED STUDY; EXPRESSED SEQUENCE TAG; GENETIC TRANSCRIPTION; HUMAN; HUMAN CELL; HUMAN TISSUE; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SINGLE NUCLEOTIDE POLYMORPHISM; SOMATIC MUTATION; STATISTICAL ANALYSIS; CELL TRANSFORMATION; GENETIC VARIABILITY; GENETICS; NEOPLASM; NUCLEOTIDE SEQUENCE;

BASE SEQUENCE; CELL TRANSFORMATION, NEOPLASTIC; EXPRESSED SEQUENCE TAGS; HUMANS; NEOPLASMS; RNA, MESSENGER; VARIATION (GENETICS); VIMENTIN;

EID: 34250676556     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0611076104     Document Type: Article

References (30)

1. Vogelstein B, Kinzler KW (2004) Nat Med 10:789-799.
2. Sjoblom T, Jones S, Wood LD, Parsons DW, Lin J, Barber TD, Mandelker D, Leary RJ, Ptak J, Silliman N, et al. (2006) Science 314:268-274.
3. Nelkin B, Pardell D, Robinson S, Small D, Vogelstein B (1982) in Tumor Cell Heterogeneity: Origins and Implications, eds Owens A, Coffey DS, Baylin SB (Academic, New York), pp 441-460.
4. Gott JM, Emeson RB (2000) Annu Rev Genet 34:499-531.
5. Maas S, Rich A (2000) BioEssays 22:790-802.
6. Niswender CM (1998) Cell Mol Life Sci 54:946-964.
7. Pomerantz RT, Temiakov D, Anikin M, Vassylyev DG, McAllister WT (2006) Mol Cell 24:245-255.
8. Kashkina E, Anikin M, Brueckner F, Pomerantz RT, McAllister WT, Cramer P, Temiakov D (2006) Mol Cell 24:257-266.
9. Lodish H, Berk A, Zipursky L, Matsudaira P, Baltimore D, Darnell J (2000), Molecular Cell Biology (Freeman, New York), pp 216-223.
10. Hillier LD, Lennon G, Becker M, Bonaldo MF, Chiapelli B, Chissoe S, Dietrich N, DuBuque T, Favello A, Gish W, et al. (1996) Genome Res 6:807-828.
11. Boguski MS, Lowe TM, Tolstoshev CM (1993) Nat Genet 4:332-333.
12. Zhang Z, Schwartz S, Wagner L, Miller W (2000) J Comput Biol 7:203-214.
13. Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K (2001) Nucleic Acids Res 29:308-311.
14. Dalmasso C, Broet P (2005) J Soc Fr Stat 146:63-75.
15. Ng P, Tan JJ, Ooi HS, Lee YL, Chiu KP, Fullwood MJ, Srinivasan KG, Perbost C, Du L, Sung WK, et al. (2006) Nucleic Acids Res 34:e84.
16. Thomas RK, Nickerson E, Simons JF, Janne PA, Tengs T, Yuza Y, Garraway LA, LaFramboise T, Lee JC, Shah K, et al. (2006) Nat Med 12:852-855.
17. Evans DA, van der Kleij AA, Sonnemans MA, Burbach JP, van Leeuwen FW (1994) Proc Natl Acad Sci USA 91:6059-6063.
18. van Leeuwen FW, Fischer DF, Kamel D, Sluijs JA, Sonnemans MA, Benne R, Swaab DF, Salehi A, Hol EM (2000) Neurobiol Aging 21:879-891.
19. Vogel G (1998) Science 279:174.
20. van Leeuwen FW, van Tijn P, Sonnemans MA, Hobo B, Mann DM, Van Broeckhoven C, Kumar-Singh S, Cras P, Leuba G, Savioz A, et al. (2006) Neurology 66:S86-S92.
21. Benson KF, Person RE, Li FQ, Williams K, Horwitz M (2004) Nucleic Acids Res 32:6327-6333.
22. Ba Y, Tonoki H, Tada M, Nakata D, Hamada J, Moriuchi T (2000) Mutat Res 447:209-220.
23. Armache KJ, Kettenberger H, Cramer P (2005) Curr Opin Struct Biol 15:197-203.
24. Cramer P (2004) Curr Opin Genet Dev 14:218-226.
25. Westover KD, Bushnell DA, Kornberg RD (2004) Cell 119:481-489.
26. Erie DA, Hajiseyedjavadi O, Young MC, von Hippel PH (1993) Science 262:867-873.
27. Zenkin N, Yuzenkova Y, Severinov K (2006) Science 313:518-520.
28. Cramer P (2006) Science 313:447-448.
29. Marshall E (2004) Science 306:630-631.
30. Master SR (2005) Clin Chem 51:1333-1334.