Expression profiling of Oryza sativa metal homeostasis genes in different rice cultivars using a cDNA macroarray

Plant Physiology and Biochemistry

Volumn 45, Issue 5, 2007, Pages 277-286

  Narayanan, Narayanan N ^a   Vasconcelos, Marta W ^a   Grusak, Michael A ^a  

^a BAYLOR COLLEGE OF MEDICINE   (United States)

Author keywords

cDNA macroarray; Gene expression; Iron; Metal homeostasis; Rice

Indexed keywords

COMPLEMENTARY DNA; METAL; PLANT DNA; VEGETABLE PROTEIN;

ARTICLE; CLASSIFICATION; DNA MICROARRAY; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETICS; HOMEOSTASIS; METABOLISM; METHODOLOGY; PLANT LEAF; PLANT SEED; RICE;

DNA, COMPLEMENTARY; DNA, PLANT; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, PLANT; HOMEOSTASIS; METALS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; ORYZA SATIVA; PLANT LEAVES; PLANT PROTEINS; SEEDS;

ORYZA SATIVA;

EID: 34249942674     PISSN: 09819428     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.plaphy.2007.03.021     Document Type: Article

References (44)

1. Belouchi A., Kwan T., and Gros P. Cloning and characterization of the OsNramp family from Oryza sativa, a new family of membrane proteins possibly implicated in the transport of metal ions. Plant Mol. Biol. 33 (1997) 1085-1092
2. Bereczky Z., Wang H.Y., Schubert V., Ganal M., and Bauer P. Differential regulation of NRAMP and IRT metal transporter genes in wild type and iron uptake mutants of tomato. J. Biol. Chem. 278 (2003) 24697-24704
3. Bouis H.E. Micronutrient fortification of plants through plant breeding: can it improve nutrition in man at low cost?. Proc. Nutr. Soc. 62 (2003) 403-411
4. Bughio N., Yamaguchi H., Nishizawa N.K., Nakanishi H., and Mori S. Cloning an iron regulated metal transporter from rice. J. Exp. Bot. 53 (2002) 1677-1682
5. Chávez-Bárcenas A.T., Valdez-Alarcón J.J., Martínez-Trujillo M., Chen L., Xoconostle-Cázares B., Lucas W.J., and Herrera-Estrella L. Tissue-specific and developmental pattern of expression of the rice sps1 gene. Plant Physiol. 124 (2000) 641-654
6. Colangelo E.P., and Guerinot M.L. Put the metal to the petal: metal uptake and transport throughout plants. Curr. Opin. Plant Biol. 9 (2006) 322-330
7. Connolly E., Fett J., and Guerinot M.L. Expression of the IRT1 metal transporter is controlled by metals at the levels of transcript and protein accumulation. Plant Cell 14 (2002) 1347-1353
8. Curie C., Panaviene Z., Loulergue C., Dellaporta S.L., Briat J.F., and Walker E.L. Maize yellow stripe1 encodes a membrane protein directly involved in Fe(III) uptake. Nature 409 (2001) 346-349
9. Curie C., Alonso J.M., Le Jean M., Ecker J.R., and Briat J.F. Involvement of NRAMP1 from Arabidopsis thaliana in iron transport. Biochem. J. 347 (2000) 749-755
10. DiDonato Jr. R.J., Roberts L.A., Sanderson T., Eisley R.B., and Walker E.L. Arabidopsis Yellow Stripe-Like2 (YSL2): a metal-regulated gene encoding a plasma membrane transporter of nicotianamine-metal complexes. Plant J. 39 (2004) 403-414
11. Donsan J., Fang Y., Espiritu-Santo G., Xing W., Salazar A., Miyamoto S., Armendarez V., and Volkmuth W. Comprehensive gene expression analysis by transcript profiling. Plant Mol. Biol. 48 (2002) 75-97
12. Eide D., Broderus M., Fett J., and Guerinot M.L. A novel iron-regulated metal transporter from plants identified by functional expression in yeast. Proc. Natl. Acad. Sci. U.S.A. 93 (1996) 5624-5628
13. Frossard E., Bucher M., Mächler F., Mozafar A., and Hurrell R. Potential for increasing the content and bioavailability of Fe, Zn and Ca in plants for human nutrition. J. Sci. Food Agric. 80 (2000) 861-879
14. Glahn R.P., Cheng Z., Welch R.M., and Gregorio G.B. Comparison of iron bioavailability from 15 rice genotypes: studies using an in vitro digenstion/Caco-2 cell culture model. J. Agric. Food Chem. 50 (2002) 3586-3591
15. Goff S.A., Ricke D., Lan T.H., Presting G., Wang R., Dunn M., Glazebrook J., Sessions A., Oeller P., Varma H., Hadley D., Hutchison D., Martin C., Katagiri F., Lange B.M., Moughamer T., Xia Y., Budworth P., Zhong J., Miguel T., Paszkowski U., Zhang S., Colbert M., Sun W.L., Chen L., Cooper B., Park S., Wood T.C., Mao L., Quail P., Wing R., Dean R., Yu Y., Zharkikh A., Shen R., Sahasrabudhe S., Thomas A., Cannings R., Gutin A., Pruss D., Reid J., Tavtigian S., Mitchell J., Eldredge G., Scholl T., Miller R.M., Bhatnagar S., Adey N., Rubano T., Tusneem N., Robinson R., Feldhaus J., Macalma T., Oliphant A., and Briggs S. A draft sequence of the rice genome (Oryza sativa L. ssp. japonica). Science 296 (2002) 92-100
16. Graham R.D., Senadhira D., Beebe S., Iglesias C., and Montasterio I. Breeding for micronutrient density in edible portions of staple food crops: conventional approaches. Field Crops Res. 60 (1999) 57-80
17. Gregorio G.B. Progress in breeding for trace minerals in staple crops. J. Nutr. 132 (2001) 500-502
18. Gross J., Stein R.J., Fett-Neto A.G., and Fett J.P. Iron homeostasis related genes in rice. Gen. Mol. Biol. 26 (2003) 477-497
19. Grotz N., and Guerinot M.L. Limiting nutrients: an old problem with new solutions?. Curr. Opin. Plant Biol. 5 (2002) 158-163
20. Grusak M.A. Enhancing mineral content in plant food products. J. Am. Coll. Nutr. 21 (2002) 178-183
21. Grusak M.A., and DellaPenna D. Improving the nutrient composition of plants to enhance human nutrition and health. Annu. Rev. Plant Physiol. Plant Mol. Biol. 50 (1999) 133-161
22. Guerinot M.L. The ZIP family of metal transporters. Biochim. Biophys. Acta 1465 (2000) 190-198
23. Institute of Medicine. Dietary Reference Intakes, Vitamin A, Vitamin K, Arsenic, Boron, Chromium, Copper, Iodine, Iron, Manganese, Molybdenum, Nickel, Silicon, Vanadium, Zinc (2001), National Academy of Sciences, Washington, DC
24. Iqbal M.J., Yaegashi S., Njiti V.N., Ahsan R., Cryder K.L., and Lightfoot D.A. Resistance locus pyramids alter transcript abundance in soybean roots inoculated with Fusarium solani f.sp. glycines. Mol. Genet. Gen. 268 (2002) 407-417
25. 2+. Plant J. 45 (2006) 335-346
26. Jean M.L., Schikora A., Mari S., Briat J.F., and Curie C. A loss-of-function mutation in AtYSL1 reveals its role in iron and nicotianamine seed loading. Plant J. 44 (2005) 769-782
27. Kaiser B.N., Moreau S., Castelli J., Thomson R., Lambert A., Bogliolo S., Puppo A., and Day D.A. The soybean NRAMP homologue, GmDMT1, is a symbiotic divalent metal transporter capable of ferrous iron transport. Plant J. 35 (2003) 295-304
28. Koike S., Inoue H., Mizuno D., Takahashi M., Nakanishi H., Mori S., and Nishizawa N.K. OsYSL2 is a rice metal-nicotianamine transporter that is regulated by iron and expressed in the phloem. Plant J. 39 (2004) 415-424
29. Korshunova Y.O., Eide D., Clark W.G., Guerinot M.L., and Pakrasi H.B. The IRT1 protein from Arabidopsis thaliana is a metal transporter with a broad substrate range. Plant Mol. Biol. 40 (1999) 37-44
30. -ΔΔCT method. Methods 25 (2001) 402-408
31. Lucca P., Hurrell R., and Potrykus I. Genetic engineering approaches to improve the bioavailability and the level of iron in rice grains. Theor. Appl. Genet. 102 (2001) 392-397
32. Maser P., Thomine S., Schroeder J.I., Ward J.M., Hirschi K., Sze H., Talke I.N., Amtmann A., Maathuis F.J.M., Sanders D., Harper J.F., Tchieu J., Gribskov M., Persans M.W., Salt D.E., Kim S.A., and Guerinot M.L. Phylogenetic relationships within cation transporter families of Arabidopsis. Plant Physiol. 126 (2001) 1646-1667
33. Ramesh S.A., Shin R., Eide D.J., and Schachtman P. Differential metal selectivity and gene expression of two zinc transporters from rice. Plant Physiol. 133 (2003) 126-134
34. Roberts L.A., Pierson A.J., Panaviene Z., and Walker E.L. Yellow Stripe 1. Expanded roles for the maize iron-phytosiderophore transporter. Plant Physiol. 135 (2004) 112-120
35. Robinson N.J., Procter C.M., Connolly E.L., and Guerinot M.L. A ferric-chelate reductase for iron uptake from soils. Nature 397 (1999) 694-697
36. Schaaf G., Ludewig U., Erenoglu B.E., Mori S., Kitahara T., and Wiren N.v. ZmYS1 functions as a proton-coupled symporter for phytosiderophore- and nicotianamine-chelated metals. J. Biol.Chem. 279 (2004) 9091-9096
37. Thomine S., Wang R., Ward J.M., Crawford N.M., and Schroeder J.I. Cadmium and iron transport by members of a plant metal transporter family in Arabidopsis with homology to Nramp genes. Proc. Natl. Acad. Sci. U.S.A. 97 (2000) 4991-4996
38. Vasconcelos M., Datta K., Oliva N., Khalekuzzaman M., Torrizo L., Krishnan S., Oliveira M., Goto F., and Datta S.K. Enhanced iron and zinc accumulation in transgenic rice with the ferritin gene. Plant Sci. 164 (2003) 371-378
39. Vert G., Grotz N., Dédaldéchamp F., Gaymard F., Guerinot M.L., Briat J.F., and Curie C. IRT1, an Arabidopsis transporter essential for iron uptake from the soil and for plant growth. Plant Cell 14 (2002) 1223-1233
40. Vert G., Briat J.F., and Curie C. Arabidopsis IRT2 gene encodes a root-periphery iron transporter. Plant J. 26 (2001) 181-189
41. Wan J., Dunning F.M., and Bent A.F. Probing plant-pathogen interactions and downstream defense signaling using DNA microarrays. Funct. Integr. Genomics 2 (2002) 259-273
42. World Health Organization/United Nations Children's Fund/United Nations University: IDA. Prevention, assessment and control. Report of a joint WHO/UNICEF/UNU consultation (1998), WHO, Geneva 1-9
43. Ye X., Al-Babili S., Klöti A., Zhang J., Lucca P., Beyer P., and Potroykus I. Engineering the provitamin A (β-carotene) biosynthetic pathway into (carotenoid-free) rice endosperm. Science 287 (2000) 303-305
44. Yoshida S. Physiological analysis of rice yield. In: Yoshida S. (Ed). Fundamentals of Rice Crop Science (1981), International Rice Research Institute, Los Baños, Philippines 231-251