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Volumn 308, Issue 3, 2007, Pages 250-258

PCR survey of Hox genes in the goldfish Carassius auratus auratus

Author keywords

[No Author keywords available]

Indexed keywords

PRIMER DNA;

EID: 34249818171     PISSN: 15525007     EISSN: 15525015     Source Type: Journal    
DOI: 10.1002/jez.b.21144     Document Type: Article
Times cited : (25)

References (66)
  • 1
    • 0017835334 scopus 로고
    • Protein polymorphism and the rate of loss of duplicate gene expression
    • Allendorf FW. 1978. Protein polymorphism and the rate of loss of duplicate gene expression. Nature 272:76-78.
    • (1978) Nature , vol.272 , pp. 76-78
    • Allendorf, F.W.1
  • 2
    • 0002590589 scopus 로고
    • Tetraploidy and the evolution of salmonid fish
    • Turner JB, editor, New York: Plenum Press. p
    • Allendorf FW, Thorgaard GH. 1984. Tetraploidy and the evolution of salmonid fish. In: Turner JB, editor, Evolutionary genetics of fish. New York: Plenum Press. p 1-53.
    • (1984) Evolutionary genetics of fish , pp. 1-53
    • Allendorf, F.W.1    Thorgaard, G.H.2
  • 5
    • 1542347067 scopus 로고    scopus 로고
    • Neighbor-net: An agglomerative method for the construction of phylogenetic networks
    • Bryant D, Moulton V. 2004. Neighbor-net: an agglomerative method for the construction of phylogenetic networks. Mol Biol Evol 21:255-265.
    • (2004) Mol Biol Evol , vol.21 , pp. 255-265
    • Bryant, D.1    Moulton, V.2
  • 6
    • 0000744225 scopus 로고
    • Major groups within the family Cyrinidae and their Phylogenetic relationships
    • Chen XL, Yue PQ, Lin RR. 1984. Major groups within the family Cyrinidae and their Phylogenetic relationships. Acta Zootaxon Sin 4:424-440.
    • (1984) Acta Zootaxon Sin , vol.4 , pp. 424-440
    • Chen, X.L.1    Yue, P.Q.2    Lin, R.R.3
  • 7
    • 33847199654 scopus 로고    scopus 로고
    • Preface
    • Chen Yiyu et al, editors, Beijing: Science Press. p
    • Chen YY. 1998. Preface. In: Chen Yiyu et al., editors, Fauna Sinica, Osteichthyes, Cypriniformes II. Beijing: Science Press. p 1-18.
    • (1998) Fauna Sinica, Osteichthyes, Cypriniformes II , pp. 1-18
    • Chen, Y.Y.1
  • 9
    • 33644681986 scopus 로고    scopus 로고
    • The advantages and disadvantages of being polyploid
    • Comai L. 2005. The advantages and disadvantages of being polyploid. Nat Rev Genet 6:836-846.
    • (2005) Nat Rev Genet , vol.6 , pp. 836-846
    • Comai, L.1
  • 11
    • 28944450051 scopus 로고    scopus 로고
    • The fish specific Hox cluster duplication is coincident with the origin of teleosts
    • Crow KD, Stadler PF, Lynch VJ, Amemiya CT, Wagner GP. 2006. The fish specific Hox cluster duplication is coincident with the origin of teleosts. Mol Biol Evol 23:121-136.
    • (2006) Mol Biol Evol , vol.23 , pp. 121-136
    • Crow, K.D.1    Stadler, P.F.2    Lynch, V.J.3    Amemiya, C.T.4    Wagner, G.P.5
  • 12
    • 0001503580 scopus 로고
    • Diploid-triploid mosaics among unisexual hybrids of the minnows Phoxinus eos and Phoxinus neogaeus
    • Dawley RM, Goddard KA. 1988. Diploid-triploid mosaics among unisexual hybrids of the minnows Phoxinus eos and Phoxinus neogaeus. Evolution 42:649-659.
    • (1988) Evolution , vol.42 , pp. 649-659
    • Dawley, R.M.1    Goddard, K.A.2
  • 13
    • 26444603772 scopus 로고    scopus 로고
    • Two rounds of whole genome duplication in the ancestral vertebrate
    • Dehal P, Boore JL. 2005. Two rounds of whole genome duplication in the ancestral vertebrate. PLoS Biol 3: e314.
    • (2005) PLoS Biol , vol.3
    • Dehal, P.1    Boore, J.L.2
  • 14
    • 20144366981 scopus 로고    scopus 로고
    • Genome duplication, extinction and vertebrate evolution
    • Donoghue PC, Purnell MA. 2005. Genome duplication, extinction and vertebrate evolution. Trends Ecol Evol 20: 312-319.
    • (2005) Trends Ecol Evol , vol.20 , pp. 312-319
    • Donoghue, P.C.1    Purnell, M.A.2
  • 15
    • 34249803332 scopus 로고    scopus 로고
    • Felsenstein J. 1989. Phylip-phylogeny inference package version 3.2, Cladistics 5:164-166
    • Felsenstein J. 1989. Phylip-phylogeny inference package (version 3.2). Cladistics 5:164-166.
  • 16
    • 0017577767 scopus 로고
    • Loss of duplicate gene-expression after poly-ploidization
    • Ferris SD, Whitt GS. 1977. Loss of duplicate gene-expression after poly-ploidization. Nature 265:258-260.
    • (1977) Nature , vol.265 , pp. 258-260
    • Ferris, S.D.1    Whitt, G.S.2
  • 18
    • 4344648527 scopus 로고    scopus 로고
    • Polyploidy in vertebrate ancestry: Ohno and beyond
    • Furlong RF, Holland PWH. 2004. Polyploidy in vertebrate ancestry: Ohno and beyond. Biol J Linn Soc 82:425-430.
    • (2004) Biol J Linn Soc , vol.82 , pp. 425-430
    • Furlong, R.F.1    Holland, P.W.H.2
  • 19
    • 0020317308 scopus 로고
    • Patterns of nucleotide substitution in pseudogenes and functional genes
    • Gojobori T, Li WH. 1982. Patterns of nucleotide substitution in pseudogenes and functional genes. J Mol Evol 18: 360-369.
    • (1982) J Mol Evol , vol.18 , pp. 360-369
    • Gojobori, T.1    Li, W.H.2
  • 20
    • 0032946571 scopus 로고    scopus 로고
    • The modulation of DNA content: Proximate causes and ultimate consequences
    • Gregory TR, Hebert PDN. 1999. The modulation of DNA content: proximate causes and ultimate consequences. Genome Res 9:317-324.
    • (1999) Genome Res , vol.9 , pp. 317-324
    • Gregory, T.R.1    Hebert, P.D.N.2
  • 21
    • 22144452139 scopus 로고    scopus 로고
    • Hox clusters as models for vertebrate genome evolution
    • Hoegg S, Meyer A. 2005. Hox clusters as models for vertebrate genome evolution. Trends Genet 21:421-424.
    • (2005) Trends Genet , vol.21 , pp. 421-424
    • Hoegg, S.1    Meyer, A.2
  • 22
    • 4143134848 scopus 로고    scopus 로고
    • Phylogenetic timing of the fish-specific genome duplication correlates with the diversification of teleost fish
    • Hoegg S, Brinkmann H, Taylor JS, Meyer A. 2004. Phylogenetic timing of the fish-specific genome duplication correlates with the diversification of teleost fish. J Mol Evol 59: 190-203.
    • (2004) J Mol Evol , vol.59 , pp. 190-203
    • Hoegg, S.1    Brinkmann, H.2    Taylor, J.S.3    Meyer, A.4
  • 24
    • 0002951232 scopus 로고
    • Systematics and biogeography: An overview
    • Winfield IJ, Nelson JS, editors, London: Chapman and Hall. p
    • Howes GJ. 1991. Systematics and biogeography: an overview. In: Winfield IJ, Nelson JS, editors. Cyprinid fishes, systematics, biology and exploitation. London: Chapman and Hall. p 1-33.
    • (1991) Cyprinid fishes, systematics, biology and exploitation , pp. 1-33
    • Howes, G.J.1
  • 25
    • 0031678692 scopus 로고    scopus 로고
    • Splitstree: Analyzing and visualizing evolutionary data
    • Huson DH. 1998. Splitstree: analyzing and visualizing evolutionary data. Bioinformatics 14:68-73.
    • (1998) Bioinformatics , vol.14 , pp. 68-73
    • Huson, D.H.1
  • 28
    • 0027511471 scopus 로고
    • Homeobox genes expressed in the retina and brain of adult goldfish
    • Levine EM, Schechter N. 1993. Homeobox genes expressed in the retina and brain of adult goldfish. Proc Natl Acad Sci USA 90:2729-2733.
    • (1993) Proc Natl Acad Sci USA , vol.90 , pp. 2729-2733
    • Levine, E.M.1    Schechter, N.2
  • 29
    • 34249804207 scopus 로고    scopus 로고
    • editor, Molecular evolution, Sunderland MA: Sinauer Associates. p
    • Li WH. 1997. Gene structure, genetic codes, and mutation. In: Li WH, editor, Molecular evolution, Sunderland MA: Sinauer Associates. p 31-33.
    • (1997) Gene structure, genetic codes, and mutation , pp. 31-33
    • Li, W.H.1
  • 30
    • 0021710490 scopus 로고
    • Nonrandomness of point mutations as reflected in nucleotide substitutions in pseudogenes and its evolutionary implications
    • Li WH, Wu C., Luo C. 1984. Nonrandomness of point mutations as reflected in nucleotide substitutions in pseudogenes and its evolutionary implications. J Mol Evol 21:58-71.
    • (1984) J Mol Evol , vol.21 , pp. 58-71
    • Li, W.H.1    Wu, C.2    Luo, C.3
  • 31
    • 33845719740 scopus 로고    scopus 로고
    • A BAC li-brary for the goldfish Carassius auratus auratus (Cyprinidae, Cypriniformes)
    • in press
    • Luo J, Lang M, Salzburger W, Siegel N, Stoelting K, Meyer A. 2006. A BAC li-brary for the goldfish Carassius auratus auratus (Cyprinidae, Cypriniformes). J Exp Zool B, in press.
    • (2006) J Exp Zool B
    • Luo, J.1    Lang, M.2    Salzburger, W.3    Siegel, N.4    Stoelting, K.5    Meyer, A.6
  • 32
    • 0034634395 scopus 로고    scopus 로고
    • The evolutionary fate and consequences of duplicate genes
    • Lynch M, Conery JS. 2000. The evolutionary fate and consequences of duplicate genes. Science 290: 1151-1155.
    • (2000) Science , vol.290 , pp. 1151-1155
    • Lynch, M.1    Conery, J.S.2
  • 33
    • 0035697435 scopus 로고    scopus 로고
    • The probability of preservation of a newly arisen gene duplicate
    • Lynch M, O'Hely M, Walsh B, Force A. 2001. The probability of preservation of a newly arisen gene duplicate. Genetics 159:1789-1804.
    • (2001) Genetics , vol.159 , pp. 1789-1804
    • Lynch, M.1    O'Hely, M.2    Walsh, B.3    Force, A.4
  • 34
    • 23044529744 scopus 로고    scopus 로고
    • Genome duplications and accelerated evolution of Hox genes and cluster architecture in teleost fishes
    • Malaga-Trillo E, Meyer A. 2001. Genome duplications and accelerated evolution of Hox genes and cluster architecture in teleost fishes. Am Zool 41:676-686.
    • (2001) Am Zool , vol.41 , pp. 676-686
    • Malaga-Trillo, E.1    Meyer, A.2
  • 36
    • 0026504525 scopus 로고
    • Homeobox genes and axial patterning
    • McGinnis W, Krumlauf R. 1992. Homeobox genes and axial patterning. Cell 68:283-302.
    • (1992) Cell , vol.68 , pp. 283-302
    • McGinnis, W.1    Krumlauf, R.2
  • 37
    • 26244444380 scopus 로고    scopus 로고
    • From 2R to 3R: Evidence for a fish-specific genome duplication (FSGD)
    • Meyer A, Van de Peer Y. 2005. From 2R to 3R: evidence for a fish-specific genome duplication (FSGD). Bioessays 27: 937-945.
    • (2005) Bioessays , vol.27 , pp. 937-945
    • Meyer, A.1    Van de Peer, Y.2
  • 38
    • 27744588853 scopus 로고    scopus 로고
    • Evolution of Hox clusters in Salmonidae: A comparative analysis between Atlantic salmon (Salmo salar) and rainbow trout (Oncorhynchus mykiss)
    • Moghadam HK, Ferguson MM, Danzmann RG. 2005a. Evolution of Hox clusters in Salmonidae: a comparative analysis between Atlantic salmon (Salmo salar) and rainbow trout (Oncorhynchus mykiss). J Mol Evol 61:636-649.
    • (2005) J Mol Evol , vol.61 , pp. 636-649
    • Moghadam, H.K.1    Ferguson, M.M.2    Danzmann, R.G.3
  • 39
    • 27744471365 scopus 로고    scopus 로고
    • Evidence for Hox gene duplication in rainbow trout (Oncorhynchus mykiss): A tetraploid model species
    • Moghadam HK, Ferguson MM, Danzmann RG. 2005b. Evidence for Hox gene duplication in rainbow trout (Oncorhynchus mykiss): a tetraploid model species. J Mol Evol 61:804-818.
    • (2005) J Mol Evol , vol.61 , pp. 804-818
    • Moghadam, H.K.1    Ferguson, M.M.2    Danzmann, R.G.3
  • 40
    • 0035070586 scopus 로고    scopus 로고
    • The maternal origins of the triploid ginbuna (Carassius auratus langsdorfi): Phylogenetic relationships within the C. auratus taxa by partial mitochondrial d-loop sequencing
    • Murakami M, Matsuba C, Fujitani H. 2001. The maternal origins of the triploid ginbuna (Carassius auratus langsdorfi): phylogenetic relationships within the C. auratus taxa by partial mitochondrial d-loop sequencing. Genes Genet Syst 76:25-32.
    • (2001) Genes Genet Syst , vol.76 , pp. 25-32
    • Murakami, M.1    Matsuba, C.2    Fujitani, H.3
  • 42
    • 0034942558 scopus 로고    scopus 로고
    • Quartet-mapping, a generalization of the likelihood mapping procedure
    • Nieselt-Struwe K, von Haeseler A. 2001. Quartet-mapping, a generalization of the likelihood mapping procedure. Mol Biol Evol 18:1204-1219.
    • (2001) Mol Biol Evol , vol.18 , pp. 1204-1219
    • Nieselt-Struwe, K.1    von Haeseler, A.2
  • 44
    • 0013995340 scopus 로고
    • Comparative DNA values and chromosome complements of eight species of fishes
    • Ohno S, Atkin NB. 1966. Comparative DNA values and chromosome complements of eight species of fishes. Chromosoma 18:455-466.
    • (1966) Chromosoma , vol.18 , pp. 455-466
    • Ohno, S.1    Atkin, N.B.2
  • 45
    • 0002850865 scopus 로고
    • Diploid - tetraploid relationship among old-world members of the fish family cyprinidae
    • Ohno S, Muramoto J, Christian L, Atkin NB. 1967. Diploid - tetraploid relationship among old-world members of the fish family cyprinidae. Chromosoma 23:1-9.
    • (1967) Chromosoma , vol.23 , pp. 1-9
    • Ohno, S.1    Muramoto, J.2    Christian, L.3    Atkin, N.B.4
  • 46
    • 3142552575 scopus 로고    scopus 로고
    • The duplication of the hox gene clusters in teleost fishes
    • Prohaska SJ, Stadler PF. 2004. The duplication of the hox gene clusters in teleost fishes. Th Biosci 123:89-110.
    • (2004) Th Biosci , vol.123 , pp. 89-110
    • Prohaska, S.J.1    Stadler, P.F.2
  • 47
    • 0027504740 scopus 로고
    • Multiple loci for synapse protein SNAP-25 in the tetraploid goldfish
    • Risinger C, Larhammar D. 1993. Multiple loci for synapse protein SNAP-25 in the tetraploid goldfish. Proc Natl Acad Sci USA 90:10598-10602.
    • (1993) Proc Natl Acad Sci USA , vol.90 , pp. 10598-10602
    • Risinger, C.1    Larhammar, D.2
  • 48
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou N, Nei M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425.
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 50
    • 0027395830 scopus 로고
    • The antenna-pedia-type home-obox genes have evolved from three precursors separated early in metazoan evolution
    • Schubert FR, Nieselt-Struwe K, Grass P. 1993. The antenna-pedia-type home-obox genes have evolved from three precursors separated early in metazoan evolution. Proc Natl Acad Sci USA 90:143-147.
    • (1993) Proc Natl Acad Sci USA , vol.90 , pp. 143-147
    • Schubert, F.R.1    Nieselt-Struwe, K.2    Grass, P.3
  • 51
    • 0030473920 scopus 로고    scopus 로고
    • Gen(om)e duplications in the evolution of early vertebrates
    • Sidow A. 1996. Gen(om)e duplications in the evolution of early vertebrates. Curr Opin Genet Dev 6:715-722.
    • (1996) Curr Opin Genet Dev , vol.6 , pp. 715-722
    • Sidow, A.1
  • 52
    • 0034691216 scopus 로고    scopus 로고
    • The role of genetic and genomic attributes in the success of polyploids
    • Soltis P, Soltis DE. 2000. The role of genetic and genomic attributes in the success of polyploids. Proc Natl Acad Sci USA 97:7051-7057.
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 7051-7057
    • Soltis, P.1    Soltis, D.E.2
  • 54
    • 0037351989 scopus 로고    scopus 로고
    • Genome duplication, a trait shared by 22,000 species of ray-finned fish
    • Taylor J, Braasch I, Frickey T, Meyer A, Van De Peer Y. 2003. Genome duplication, a trait shared by 22,000 species of ray-finned fish. Genome Res 13:382-390.
    • (2003) Genome Res , vol.13 , pp. 382-390
    • Taylor, J.1    Braasch, I.2    Frickey, T.3    Meyer, A.4    Van De Peer, Y.5
  • 55
    • 0035968908 scopus 로고    scopus 로고
    • Comparative genomics provides evidence for an ancient genome duplication event in fish
    • Taylor JS, Van de Peer Y, Braasch I, Meyer A. 2001. Comparative genomics provides evidence for an ancient genome duplication event in fish. Philos Trans R Soc Lond Ser B 356:1661-1679.
    • (2001) Philos Trans R Soc Lond Ser B , vol.356 , pp. 1661-1679
    • Taylor, J.S.1    Van de Peer, Y.2    Braasch, I.3    Meyer, A.4
  • 56
    • 0027968068 scopus 로고
    • CLUSTALW: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties, and weight matrix choice
    • Thompson JD, Higgs DG, Gibson TJ. 1994. CLUSTALW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties, and weight matrix choice. Nuclei Acids Res 22:4673-4680.
    • (1994) Nuclei Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgs, D.G.2    Gibson, T.J.3
  • 57
    • 1242274629 scopus 로고    scopus 로고
    • Major events in the genome evolution of vertebrates: Paranome age and size differ considerably between ray-finned fishes and land vertebrates
    • Vandepoele K, De Vos W, Taylor JS, Meyer A, Van de Peer Y. 2004. Major events in the genome evolution of vertebrates: Paranome age and size differ considerably between ray-finned fishes and land vertebrates. Proc Natl Acad Sci USA 101:1638-1643.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 1638-1643
    • Vandepoele, K.1    De Vos, W.2    Taylor, J.S.3    Meyer, A.4    Van de Peer, Y.5
  • 58
    • 0035339923 scopus 로고    scopus 로고
    • Birth and death of duplicated genes in completely sequenced eukaryotes
    • Wagner A. 2001. Birth and death of duplicated genes in completely sequenced eukaryotes. Trends Genet 17: 237-239.
    • (2001) Trends Genet , vol.17 , pp. 237-239
    • Wagner, A.1
  • 59
    • 0344736730 scopus 로고    scopus 로고
    • Hox cluster duplications and the opportunity for evolutionary novelties
    • Wagner GP, Amemiya C, Ruddle F. 2003. Hox cluster duplications and the opportunity for evolutionary novelties. Proc Natl Acad Sci USA 100:14603-14606.
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 14603-14606
    • Wagner, G.P.1    Amemiya, C.2    Ruddle, F.3
  • 60
    • 21244500577 scopus 로고    scopus 로고
    • Molecular evolution of duplicated ray finned fish HoxA clusters: Increased synonymous substitution rate and asymmetrical co-divergence of coding and non-coding sequences
    • Wagner GP, Takahashi K, Lynch V, Prohaska SJ, Fried C, Stadler PF, Amemiya C. 2005. Molecular evolution of duplicated ray finned fish HoxA clusters: increased synonymous substitution rate and asymmetrical co-divergence of coding and non-coding sequences. J Mol Evol 60:665-676.
    • (2005) J Mol Evol , vol.60 , pp. 665-676
    • Wagner, G.P.1    Takahashi, K.2    Lynch, V.3    Prohaska, S.J.4    Fried, C.5    Stadler, P.F.6    Amemiya, C.7
  • 61
    • 0033974956 scopus 로고    scopus 로고
    • Genome evolution in polyploids
    • Wendel JF. 2000. Genome evolution in polyploids. Plant Mol Biol 42:225-249.
    • (2000) Plant Mol Biol , vol.42 , pp. 225-249
    • Wendel, J.F.1
  • 63
    • 0035344021 scopus 로고    scopus 로고
    • Yesterday's polyploidy and the mystery of diploidization
    • Wolfe K. 2001. Yesterday's polyploidy and the mystery of diploidization. Nat Rev Genet 2:333-341.
    • (2001) Nat Rev Genet , vol.2 , pp. 333-341
    • Wolfe, K.1
  • 65
    • 3042635183 scopus 로고    scopus 로고
    • Positive selection on multiple antique allelic lineages of transferrin in the polyploid Carassius auratus
    • Yang L, Gui JF. 2004. Positive selection on multiple antique allelic lineages of transferrin in the polyploid Carassius auratus. Mol Biol Evol 21:1264-1277.
    • (2004) Mol Biol Evol , vol.21 , pp. 1264-1277
    • Yang, L.1    Gui, J.F.2


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