Characterization of the bacterial flora in mineral waters in upstreaming fluids of deep igneous rock aquifers

Journal of Geophysical Research: Biogeosciences

Volumn 112, Issue 1, 2007, Pages

  Wagner, C ^a   Mau, Margit ^a   Schlömann, Michael ^a   Heinicke, J ^b   Koch, U ^b  

^a TU BERGAKADEMIE FREIBERG   (Germany)

^b Saxon Academy of Sciences   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

AQUIFER; CHEMICAL COMPOSITION; FLORA; HYDROGEOCHEMISTRY; IGNEOUS ROCK; ION; IRON; MICROBIAL COMMUNITY; RADON; RNA; SPRING WATER;

BOHEMIA; CENTRAL EUROPE; CZECH REPUBLIC; EURASIA; EUROPE; GERMANY; VOGTLAND;

BACTERIA (MICROORGANISMS); GALLIONELLA; GALLIONELLA FERRUGINEA; SULFURICURVUM; THIOBACILLUS; THIOBACILLUS AQUAESULIS;

EID: 34249814604     PISSN: 01480227     EISSN: None     Source Type: Journal    
DOI: 10.1029/2005JG000105     Document Type: Article

References (37)

1. Angert, E., D. Northup, A.-L. Reysenbach, A. Peek, B. Goebel, and N. Pace (1998), Molecular phylogenetic analysis of a bacterial community in Sulphur River, Parker Cave, Kentucky, Am. Mineral., 83, 1583-1592.
2. Bräuer, K., H. Kämpf, E. Faber, U. Koch, H.-M. Nitzsche, and G. Strauch (2005), Seismically triggered microbial methane production relating to the Vogtland - NW Bohemia earthquake swarm period 2000, Central Europe, Geochem. J., 39, 441-450.
3. Campbell, T. N., and F. Y. M. Choy (2001), Large-scale colony screening and insert orientation determination using PCR, Biotechniques, 30, 32-34.
4. Coates, J. D., D. J. Ellis, C. V. Gaw, and D. R. Lovley (1999), Geothrix fermentans gen. nov., sp. nov., a novel Fe (III)-reducing bacterium from a hydrocarbon-contaminated aquifer, Int. J. Syst. Bacteriol., 49, 1615-1622.
5. Cole, J. R., et al. (2003), The Ribosomal Database Project (RDP-II): Previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy, Nucleic Acids Res., 31, 442-443.
6. Dojka, M. A., P. Hugenholtz, S. K. Haack, and N. R. Pace (1998), Microbial diversity in a hydrocarbon- and chlorinated-solvent-contaminated aquifer undergoing intrinsic bioremediation, Appl. Environ. Microbiol., 64, 3869-3877.
7. Engel, A. S., M. L. Porter, B. R. Kinkle, and T. C. Kane (2001), Ecological assessment and geological significance of microbial communities from Cesspool Cave, Virginia, Geomicrobiol. J., 18, 259-274.
8. Engel, A. S., N. Lee, M. L. Porter, L. A. Stern, P. C. Bennett, and M. Wagner (2003), Filamentous "Epsilonproteobacteria" dominate microbial mats from sulfidic cave springs, Appl. Environ. Microbiol., 69, 5503-5511.
9. Hallbeck, L., F. Ståhl, and K. Pedersen (1993), Phylogeny and phenotypic characterization of the stalk-forming and iron-oxidizing bacterium Gallionella ferruginea, J. Gen. Microbiol., 139, 1531-1535.
10. Harris, J. K., S. T. Kelley, and N. R. Pace (2004), New perspective on uncultured bacterial phylogenetic division OP11, Appl. Environ. Microbiol., 70, 845-849.
11. Heinicke, J., and U. Koch (2000), Slug flow - A possible explanation for hydrogeochemical earthquake precursors at Bad Brambach, Germany, Pure Appl. Geophys., 157, 1621-1641.
12. 2 and radon measurements in the Vogtland area (Germany) - A contribution to earthquake prediction research, Geophys. Res. Lett., 22, 771-774.
13. Hugenholtz, P., and T. Huber (2003), Chimeric 16S rDNA sequences of diverse origin are accumulating in the public databases, Int. J. Syst. Evol. Microbiol., 53, 289-293.
14. Hugenholtz, P., B. M. Goebel, and N. R. Pace (1998a), Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity, J. Bacteriol., 180, 4765-4774.
15. Hugenholtz, P., C. Pitulle, K. L. Hershberger, and N. R. Pace (1998b), Novel division level bacterial diversity in a Yellowstone hot spring, J. Bacteriol., 180, 366-376.
16. 2 fixation via the reductive tricarboxylic acid cycle by members of the ε subdivision of proteobacteria, J. Bacteriol., 187, 3020-3027.
17. Kämpf, H., K. Bräuer, E. Faber, U. Koch, J. Mrlina, G. Strauch, and S. M. Weise (2003), Gas monitoring results at the Wettinquelle in relation to the Vogtland-NW Bohemian earthquake swarm period 2000, paper presented at 7th International Conference on Gas Geochemistry, Tech. Univ. Bergakad. Freiberg, Freiberg, Germany.
18. Kelly, D. P., and A. P. Wood (2000a), Reclassification of some species of Thiobacillus to the newly designated genera Acidithiobacillus gen. nov., Halothiobacillus gen. nov. and Thermithiobacillus gen. nov., Int. J. Syst. Evol. Microbiol., 50, 511-516.
19. Kelly, D. P., and A. P. Wood (2000b), Confirmation of Thiobacillus denitrificans as a species of the genus Thiobacillus, in the β-subclass of the Proteobacteria, with strain NCIMB 9548 as the type strain, Int. J. Syst. Evol. Microbiol., 50, 547-550.
20. Koch, U., J. Heinicke, and M. Voßberg (2003), Hydrogeological effects of the latest Vogtland-NW Bohemian swarmquake period (August to December 2000), J. Geodyn., 35, 107-123.
21. Koch, U., D. Hebert, M. Voßberg, and J. Heinicke (2005), Effects of the remediation of the capture structure of the Wettinquelle, Bad Brambach, on the age distribution of the mineral water (in German), Grundwasser, 10, 102-113.
22. Kodama, Y., and K. Watanabe (2003), Isolation and characterization of a sulfur-oxidizing chemolithotroph growing on crude oil under anaerobic conditions, Appl. Environ. Microbiol., 69, 107-112.
23. Kucera, S., and R. S. Wolfe (1957), A selective enrichment method for Gallionella ferruginea, J. Bacteriol., 74, 344-349.
24. Lane, D. J. (1991), 16S/23S sequencing, in Nucleic Acid Techniques in Bacterial Systematics, edited by E. Stackebrandt and M. Goodfellow, pp. 115-175, John Wiley, Hoboken, N. J.
25. Ludwig, W., et al. (1997), Detection and in situ identification of representatives of a widely distributed new bacterial phylum, FEMS Microbiol. Lett., 153, 181-190.
26. Ludwig, W., et al. (2004), ARB: A software environment for sequence data, Nucleic Acids Res., 32, 1363-1371.
27. Marchuk, D., M. Drumm, A. Saulino, and F. S. Collins (1991), Construction of T-vectors, a rapid and general system for direct cloning of unmodified PCR products, Nucleic Acids Res., 19, 1154.
28. Moissl, C., C. Rudolph, and R. Huber (2002), Natural communities of novel archaea and bacteria with a string-of-pearls-like morphology: Molecular analysis of the bacterial partners, Appl. Environ. Microbiol., 68, 933-937.
29. Pedersen, K., J. Arlinger, S. Ekendahl, and L. Hallbeck (1996a), 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the Äspö hard rock laboratory, Sweden, FEMS Microbiol. Ecol., 19, 249-262.
30. Pedersen, K., J. Arlinger, L. Hallbeck, and C. Petterson (1996b), Diversity and distribution of subterranean bacteria in groundwater at Oklo in Gabon, Africa, as determined by 16S rRNA gene sequencing, Mol. Ecol., 5, 427-436.
31. Richter, J. (1994), Methodische und regionale Beiträge zur Anwendung von Umweltisotopendaten in der Hydrogeologie, Ph.D. thesis, Univ. of Graz, Graz, Austria.
32. von Storch, K. (1998), Herkunft der balneologisch wertbestimmenden Eigenschaften in sächsischen Mineral-und Thermalwässern, UFZ-Berichte 24/1998, Umweltforschungszentrum Leipzig-Halle, Leipzig, Germany.
33. Weinlich, F. H., K. Bräuer, H. Kämpf, G. Strauch, J. Tesar, and S. M. Weise (1999), An active subcontinental mantle volatile system in the western Eger rift, Central Europe: Gas flux, isotopic (He, C, and N) and compositional fingerprints, Geochim. Cosmochim. Acta, 63, 3653-3671.
34. Wilson, K. (1994), Preparation of genomic DNA from bacteria, in Current Protocols in Molecular Biology, edited by F. M. Ausubel et al., pp. 2.4.1-2.4.2, John Wiley, Hoboken, N. J.
35. Wong, D., J. M. Suflita, J. P. McKinley, and L. R. Krumholz (2004), Impact of clay minerals on sulfate-reducing activity in aquifers, Microbiol. Ecol., 47, 80-86.
36. Wuyts, J., Y. van de Peer, and R. de Wachter (2001), Distribution of substitution rates and location of insertion sites in the tertiary structure of ribosomal RNA, Nucleic Acids Res., 29, 5017-5028.
37. T, IAM 12664, and Pseudomonas saccharophila as Azohydromonas lata gen. nov. comb. nov., Azohydromonas australica sp. nov., and Pelomonas saccharophila gen. nov. comb. nov., Int. J. Syst. Evol. Microbiol., 55, 2419-2425.