Microscale gradients of planktonic microbial communities above the sediment surface in a mangrove estuary

Estuarine, Coastal and Shelf Science

Volumn 73, Issue 3-4, 2007, Pages 651-666

  Seymour, J R ^a,b   Seuront, L ^a,c   Mitchell, J G ^a  

^a FLINDERS UNIVERSITY   (Australia)

^b USA   (United States)

^c Station Marine de Wimereux   (France)

Author keywords

bacteria; estuary; gradient; phytoplankton; sediment; virus

Indexed keywords

CONCENTRATION (COMPOSITION); ESTUARINE ENVIRONMENT; MANGROVE; MICROBIAL COMMUNITY; NUTRIENT DYNAMICS; PLANKTON; SEDIMENT-WATER INTERFACE; TEMPERATE ENVIRONMENT;

AUSTRALASIA; AUSTRALIA; SOUTH AUSTRALIA;

BACTERIA (MICROORGANISMS);

EID: 34249323015     PISSN: 02727714     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ecss.2007.03.004     Document Type: Article

References (82)

1. Almeida M.A., Cunha M.A., and Alcântara F. Loss of estuarine bacteria by viral infection and predation in microcosm conditions. Microb. Ecol. 42 (2001) 562-571
2. Andreatta S., Wallinger M.M., Piera J., Catalan J., Psenner R., Hofer J.S., and Sommaruga R. Tools for discrimination and analysis of lake bacterioplankton subgroups measured by flow cytometry in a high-resolution depth profile. Aquat. Microb. Ecol. 36 (2004) 107-115
3. Asmus R.M., Sprung M., and Asmus H. Nutrient fluxes in intertidal communities of a South European lagoon (Ria Formosa) - similarities and differences with a northern Wadden Sea bay (Sylt-Rømø Bay). Hydrobiology 436 (2000) 217-235
4. Barbara G.M., and Mitchell J.G. Formation of 30- to 40-micrometer-thick laminations by speed marine bacteria in microbial mats. Appl. Environ. Microbiol. 62 (1996) 3985-3990
5. Baric A., Kuspilic G., and Matijevic S. Nutrient (N, P, Si) fluxes between marine sediments and water column in coastal and open Adriatic. Hydrobiology 475/476 (2002) 151-159
6. Beaulieu S.E. Resuspension of phytodetritus from the sea floor: a laboratory flume study. Limnol. Oceanogr. 48 (2003) 1235-1244
7. Bernard C., and Fenchel T. Mats of colourless sulphur bacteria II. Structure, composition of biota and successional patterns. Mar. Ecol. Prog. Ser. 128 (1995) 171-179
8. Blanchard G.F., Sauriau P.-G., Cariou-Le Gall V., Gouleau D., Garet M.-J., and Olivier F. Kinetics of tidal resuspension of microbiota: testing the effects of sediment cohesiveness and bioturbation using flume experiments. Mar. Ecol. Prog. Ser. 151 (1997) 17-25
9. Boehme J., Frischer M.E., Jiang S.C., Kellogg C.A., Pichard S., Rose J.B., Steinway C., and Paul J.H. Viruses, bacterioplankton and phytoplankton in the southeastern Gulf of Mexico: distribution and contribution to oceanic DNA pools. Mar. Ecol. Prog. Ser. 97 (1993) 1-10
10. Bouvy M., Troussellier M., Got P., and Arfi R. Bacterioplankton responses to bottom-up and top-down controls in a West African reservoir (Selingue, Mali). Aquat. Microb. Ecol. 34 (2004) 301-307
11. Boynton W.R., Kemp W.M., and Osborne C.G. Nutrient fluxes across the sediment-water interface in the turbid zone of a coastal plain estuary. In: Kennedy V.S. (Ed). Estuarine Perspectives (1980), Academic Press, New York 93-109
12. Burdige D.J., Alperin M.J., Homstead J., and Martens C.S. The role of benthic fluxes of dissolved organic carbon in oceanic and sedimentary carbon cycling. Geophys. Res. Lett. 19 (1992) 1851-1854
13. Burdige D.J., and Homstead J. Fluxes of dissolved organic carbon from Chesapeake Bay sediments. Geochim. Cosmochim. Acta 58 (1994) 3407-3424
14. Cabrita M.T., and Brotas V. Seasonal variation in denitrification and dissolved nitrogen fluxes in intertidal sediments of the Tagus estuary, Portugal. Mar. Ecol. Prog. Ser. 202 (2000) 51-65
15. Cochlan W.P., Wikner J., Steward G.F., Smith D.C., and Azam F. Spatial distribution of viruses, bacteria and chlorophyll a in neritic, oceanic and estuarine environments. Mar. Ecol. Prog. Ser. 92 (1993) 77-87
16. Crawford S.M., and Sanford L.P. Boundary shear velocities and fluxes in the MEERC experimental ecosystems. Mar. Ecol. Prog. Ser. 210 (2001) 1-12
17. Dade W.B. Near-bed turbulence and hydrodynamic control of diffusional mass transfer at the sea floor. Limnol. Oceanogr. 38 (1993) 52-69
18. Demers S., Therriault J.C., Bourget E., and Bah A. Resuspension in the shallow sublittoral zone of a macrotidal estuarine environment: wind influence. Limnol. Oceanogr. 32 (1987) 327-339
19. Drake L.A., Choi K.-H., Haskell A.G.E., and Dobbs F.C. Vertical profiles of virus-like particles and bacteria in the water column and sediments of Chesapeake Bay, USA. Aquat. Microb. Ecol. 16 (1998) 17-25
20. Dyer K.R. Coastal and Estuarine Sediment Dynamics (1986), Wiley & Sons, New York
21. Environmental Protection Authority of South Australia, 2000. Monitoring report: special survey of the Port River. Heavy metals and PCB's in dolphins, sediments and fish.
22. Fanning K.A., Carder K.L., and Betzer P.R. Sediment resuspension by coastal waters: a potential mechanism for nutrient re-cycling on the oceans margins. Deep Sea Res. 29 (1982) 953-965
23. Franklin R.B., Blum L.K., McComb A.C., and Mills A.L. A geostatistical analysis of small-scale spatial variability in bacterial abundance and community structure in salt marsh creek bank sediments. FEMS Microbiol. Ecol. 42 (2002) 71-80
24. Fuchs B.M., Zubkov M.V., Sam K., Burkhill P.H., and Amann R. Changes in community composition during dilution cultures of marine bacterioplankton as assessed by flow cytometry and molecular biological techniques. Environ. Microbiol. 2 (2000) 191-201
25. Gasol J.M., Zweifel U.L., Peters F., Fuhrman J.A., and Hagström A. Significance of size and nucleic acid content heterogeneity as measured by flow cytometry in natural planktonic bacteria. Appl. Environ. Microbiol. 65 (1999) 4475-4483
26. Gasol J.M., and del Giorgio P.A. Using flow cytometry for counting natural planktonic bacteria and understanding the structure of planktonic bacterial communities. Sci. Mar. 64 2 (2000) 197-224
27. Gasol J.M., Comerma M., García J.C., Armengol J., Casamayor E.O., Kojecká P., and Šimek K. A transplant experiment to identify the factors controlling bacterial abundance, activity, production, and community composition in a eutrophic canyon-shaped reservoir. Limnol. Oceanogr. 47 (2002) 62-77
28. Goldman J.C., McCarthy J.J., and Peavey D.G. Growth rate influence on the chemical composition of phytoplankton in oceanic waters. Nature 279 (1979) 210-215
29. Henriksen K., and Kemp W.M. Nitrification in estuarine and coastal marine sediments. In: Blackburn T.H., and Sørensen J. (Eds). Nitrogen Cycling in Coastal Marine Environments (1988), Wiley & Sons, SCOPE 207-249
30. Hewson I., O'Neil J.M., Fuhrman J.A., and Dennison W.C. Virus-like particle distribution and abundance in sediments and overlaying waters along eutrophication gradients in two subtropical estuaries. Limnol. Oceanogr. 46 (2001) 1734-1746
31. Holguin G., Vazquez P., and Bashan Y. The role of sediment microorganisms in the productivity, conservation and rehabilitation of mangrove ecosystems: an overview. Biol. Fertil Soils 33 (2001) 265-278
32. Hopkinson C.S. Nutrient regeneration in shallow-water sediments of the estuarine plume region of the nearshore Georgia Bight, USA. Mar. Biol. 94 (1987) 127-142
33. Hopkinson C.S., Giblin A.E., Garritt R.H., Tucker J., and Hullar M.A.J. Influence of the benthos on growth of planktonic bacteria. Aquat. Microb. Ecol. 16 (1998) 109-118
34. Jacquet S., Lennon J.-F., Marie D., and Vaulot D. Picoplankton population dynamics in coastal waters of the northwestern Mediterranean Sea. Limnol. Oceanogr. 43 (1998) 1916-1931
35. Jellett J.F., Li W.K.W., Dickie P.M., Boraie A., and Kepkay P.E. Metabolic activity of bacterioplankton communities assessed by flow cytometry and single carbon substrate utilisation. Mar. Ecol. Prog. Ser. 136 (1996) 213-225
36. Jørgensen B.B. Seasonal oxygen depletion in the bottom waters of a Danish fjord and its effect on the benthic community. Oikos 34 (1980) 68-76
37. Jørgensen B.B. Processes at the sediment-water interface. In: Bolin B., and Cook R.B. (Eds). The Major Geochemical Cycles and their Interactions (1983), John Wiley & Sons, Chichester 477-515
38. Jørgensen B.B., and Revsbech N.P. Diffusive boundary layers and the oxygen uptake of sediments and detritus. Limnol. Oceanogr. 31 (1985) 111-122
39. Jørgensen B.B., and Des Marais D.J. The diffusive boundary layer of sediments: oxygen microgradients over a microbial mat. Limnol. Oceanogr. 35 (1990) 1343-1355
40. Jumars P.A. Concepts in Biological Oceanography. An Interdisciplinary Primer (1993), Oxford University Press Inc., New York
41. Kemp M.J., and Dodds W.K. Centimeter-scale patterns in dissolved oxygen and nitrification rates in a prairie stream. J.N. Am. Benthol. Soc. 20 (2001) 347-357
42. Köster M., Babenzien H.D., Black H.J., Dahlke S., Gerbersdorf S., Meyercordt J., Meyer-Reil L.A., Rieling T., Stodian I., and Voigt A. Significance of aerobic and anaerobic mineralization processes of organic carbon in sediments of a shallow coastal inlet in the southern Baltic Sea. In: Flemming B.W., Delafontaine M.T., and Liebezeit G. (Eds). Muddy Coast Dynamics and Resource Management (2000), Elsevier Science 185-194
43. Kuwae T., Hosokawa Y., and Eguchi N. Dissolved inorganic nitrogen cycling in Banzu intertidal sand-flat. Japan. Mang. Salt Marsh. 2 (1998) 167-175
44. Lebaron P., Servais P., Agogué H., Courties C., and Joux F. Does the high nucleic acid content of individual bacterial cells allow us to discriminate between active cells and inactive cells in aquatic systems?. Appl. Environ. Microb. 67 4 (2001) 1775-1782
45. Lebaron P., Servais P., Baudox A.C., Bourrain M., Courties C., and Parthuisot N. Variations of bacterial specific activity with cell size and nucleic acid content assessed by flow cytometry. Aquat. Microb. Ecol. 28 (2002) 131-140
46. Lehman J.T., and Scavia D. Microscale patchiness of nutrients in plankton communities. Science 216 (1982) 729-730
47. Li W.K.W., Jellet J.F., and Dickie P.M. DNA distributions in planktonic bacteria stained with TOTO or TO-PRO. Limnol. Oceanogr. 40 (1995) 1485-1495
48. Libes S.M. An Introduction to Marine Biogeochemistry (1992), John Wiley & Sons, New York
49. Long R.A., and Azam F. Microscale patchiness of bacterioplankton assemblage richness in seawater. Aquat. Microb. Ecol. 26 (2001) 103-113
50. Mackin J.E., and Swider K.T. Organic matter decomposition pathways and oxygen consumption in coastal marine sediments. J. Mar. Res. 47 (1989) 681-716
51. Marie D., Partensky F., Jacquet S., and Vaulot D. Enumeration and cell cycle analysis of natural populations of marine picoplankton by flow cytometry using a novel nucleic acid dye. Appl. Environ. Microbiol. 63 (1997) 186-193
52. Marie D., Brussard C.P.D., Thyraug R., Bratbak G., and Vaulot D. Enumeration of marine viruses in culture and natural samples by flow cytometry. Appl. Environ. Microbiol. 65 (1999) 45-52
53. Marie D., Partensky F., Vaulot D., and Brussard C. Enumeration of phytoplankton, bacteria and viruses in marine samples. In: Robinson J.P. (Ed) (1999), John Wiley & Sons, Current Protocols in Cytometry 11.11.1-11.11.15
54. Middelboe M., Glud R.N., and Finster K. Distribution of viruses and bacteria in relation to diagenetic activity in an estuarine sediment. Limnol. Oceanogr. 48 (2003) 1447-1456
55. Middelboe M., Kroer N., Jørgensen N.O.G., and Pakulski D. Influence of sediment on pelagic carbon and nitrogen turnover in a shallow Danish estuary. Aquat. Microb. Ecol. 14 (1998) 81-90
56. Moreira-Turcq P.F., Cauwet G., and Martin J.M. Contribution of flow cytometry to estimate picoplankton biomass in estuarine systems. Hydrobiology 462 (2001) 157-168
57. Olson R.J., Chisholm S.W., Zettler E.R., and Armbrust E.V. Pigment, size and distribution of Synechococcus in the North Atlantic and Pacific Ocean. Limnol. Oceanogr. 35 (1990) 45-48
58. Paerl H.W., and Pinckney J.L. A mini-review of microbial consortia: their roles in aquatic production and biogeochemical cycling. Microb. Ecol. 31 (1996) 225-247
59. Qu W., Morrison R.J., and West R.J. Inorganic nutrient and oxygen fluxes across the sediment-water interface in the inshore microphyte areas of a shallow estuary (Lake Illawarra, Australia). Hydrobiology 492 (2003) 119-127
60. Randall M.J., and Ingraham J.L. The denitrifying prokaryotes. In: Staar M.P. (Ed). The Prokaryotes, a Handbook on Habitats, Isolation and Identification of Bacteria (1981), Springer 913-925
61. Rieling T., Gerbersdorf S., Stodian I., Black H.J., Dahlke S., Köster M., Meyercordt J., and Meyer-Reil L.A. Benthic microbial decomposition of organic matter and nutrient fluxes at the sediment-water interface in a shallow coastal inlet of the southern Baltic Sea (Nordrügensche Bodden). In: Flemming B.W., Delafontaine M.T., and Liebezeit G. (Eds). Muddy Coast Dynamics and Resource Management (2000), Elsevier Science 175-184
62. Ritzrau W., and Graf G. Increase of microbial biomass in the benthic turbidity zone of Kiel Bight after resuspension by a storm event. Limnol. Oceanogr. 37 (1992) 1081-1086
63. Rowe G.T., Hovey Clifford C., and Smith K.L. Benthic nutrient regeneration and its coupling to primary productivity in coastal waters. Nature 255 (1975) 215-217
64. Rysgaard S., Risgaard-Petersen N., Sloth N.P., Jensen K., and Nielsen L.P. Oxygen regulation of nitirification and denitrification in sediments. Limnol. Oceanogr. 39 (1994) 1643-1652
65. Seitzinger S.P. Denitrification in freshwater and coastal marine ecosystems: ecological and geochemical significance. Limnol. Oceanogr. 33 (1988) 702-724
66. Seitzinger S.P. Denitrification in aquatic sediments. In: Revsbech N.P., and Sørensen J. (Eds). Denitrification in Soils and Sediments (1990), Plenum Press, New York 301-322
67. Servais P., Casamayor E.O., Courties C., Catala P., Parthuisot N., and Lebaron P. Activity and diversity of bacterial cells with high and low nucleic acid content. Aquat. Microb. Ecol. 33 (2003) 41-51
68. Seuront L., and Spilmont N. Self-organized criticality in intertidal microphytobenthos patch patterns. Physica A. 313 (2002) 513-539
69. Seymour J.R., Mitchell J.G., and Seuront L. Microscale heterogeneity in the activity of coastal bacterioplankton communities. Aquat. Microb. Ecol. 35 (2004) 1-16
70. Seymour J.R., Patten N., Bourne D.G., and Mitchell J.G. Spatial dynamics of virus-like particles and heterotrophic bacteria within a shallow coral reef. Mar. Ecol. Prog. Ser. 288 (2005) 1-8
71. Shimeta J., and Sisson J.D. Taxon-specific tidal resuspension of protists into the subtidal benthic boundary layer of a coastal embayment. Mar. Ecol. Prog. Ser. 177 (1999) 51-62
72. Taylor G.I. The spectrum of turbulence. Proc. R. Soc. Lond. Ser. A. 20 (1938) 1167-1170
73. Tennekes H., and Lumley J.L. A First Course in Turbulence (1972), MIT Press, Cambridge, MA
74. Vaqué D., Casamayor E.O., and Gasol J.P. Dynamics of whole community bacterial production and grazing losses in seawater incubations as related to the changes in the proportions of bacteria with different DNA content. Aquat. Microb. Ecol. 25 (2001) 163-177
75. Vidal M., Morgui J.A., Latasa M., Romero J., and Camp J. Factors controlling seasonal variability of benthic ammonium release and oxygen uptake in Alfacs Bay (Ebro Delta, NW Mediterranean). Hydrobiology 350 (1997) 169-178
76. Wainright S.C. Stimulation of heterotrophic microplankton production by resuspended marine sediments. Science 238 (1987) 1710-1711
77. Wainright S.C. Sediment-to-water fluxes of particulate material and microbes by resuspension and their contribution to the planktonic food web. Mar. Ecol. Prog. Ser. 62 (1990) 271-281
78. Waters R.L., Mitchell J.G., and Seymour J.R. Geostatistical characterisation of centimetre-scale spatial structure of in vivo fluorescence. Mar. Ecol. Prog. Ser. 251 (2003) 49-58
79. Weinbauer M.G., Brettar I., and Höfle M.G. Lysogeny and virus-induced mortality of bacterioplankton in surface, deep, and anoxic marine waters. Limnol. Oceanogr. 48 (2003) 1457-1465
80. Wolk F., Seuront L., and Yamazaki H. Spatial resolution of a new micro-optical probe for chlorophyll and turbidity. J Tokyo Univ. Fish. 87 (2001) 13
81. Yamamuro M., and Koike I. Diel changes of nitrogen species in surface and overlaying water of an estuarine lake in summer: evidence for benthic-pelagic coupling. Limnol. Oceanogr. 39 (1994) 1726-1733
82. Zubkov M.V., Fuchs B.M., Burkill P.H., and Amann R. Comparison of cellular and biomass specific activities of dominant bacterioplankton groups in stratified waters of the. Celtic Sea. Appl. Environ. Microbiol. 67 (2001) 5210-5218