메뉴 건너뛰기




Volumn 42, Issue 1, 2002, Pages 71-80

A geostatistical analysis of small-scale spatial variability in bacterial abundance and community structure in salt marsh creek bank sediments

Author keywords

Community structure; Geostatistics; Microbial community; Salt marsh; Sediment; Spatial heterogeneity; Spatial variability

Indexed keywords

ACRIDINE ORANGE; BACTERIAL DNA;

EID: 0036803124     PISSN: 01686496     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0168-6496(02)00320-3     Document Type: Article
Times cited : (68)

References (58)
  • 1
    • 0003101854 scopus 로고
    • The study of microorganisms in situ: progress and problems
    • Fletcher, M., Gray, T.R.G. and Jones, J.G., Eds. Cambridge University Press, Cambridge
    • Brock, T.D. (1987) The study of microorganisms in situ: progress and problems. In: Ecology of Microbial Communities (Fletcher, M., Gray, T.R.G. and Jones, J.G., Eds.), pp. 1-17. Cambridge University Press, Cambridge.
    • (1987) Ecology of Microbial Communities , pp. 1-17
    • Brock, T.D.1
  • 2
    • 0002249078 scopus 로고
    • Microbial diversity and decomposer niches
    • Klug, M.J. and Reddy, C.A., Eds. American Society of Microbiology, Washington, DC
    • Swift, M.J. (1984) Microbial diversity and decomposer niches. In: Current Perspectives in Microbial Ecology (Klug, M.J. and Reddy, C.A., Eds.), pp. 8-16. American Society of Microbiology, Washington, DC.
    • (1984) Current Perspectives in Microbial Ecology , pp. 8-16
    • Swift, M.J.1
  • 5
    • 0036142849 scopus 로고    scopus 로고
    • Investigation of lotic microbial aggregates by a combined technique of fluorescent in situ hybridization and lectin-binding-analysis
    • Bockelmann U., Manz W., Neu T.R., Szewzyk U. Investigation of lotic microbial aggregates by a combined technique of fluorescent in situ hybridization and lectin-binding-analysis. J. Microbiol. Methods. 49:2002;75-87.
    • (2002) J. Microbiol. Methods , vol.49 , pp. 75-87
    • Bockelmann, U.1    Manz, W.2    Neu, T.R.3    Szewzyk, U.4
  • 6
    • 0029158847 scopus 로고
    • Quantification of Pythium-Ultimum Var Sporangiiferum zoospore encystment patterns using geostatistics
    • Dandurand L.M., Knudsen G.R., Schotzko D.J. Quantification of Pythium-Ultimum Var Sporangiiferum zoospore encystment patterns using geostatistics. Phytopathology. 85:1995;186-190.
    • (1995) Phytopathology , vol.85 , pp. 186-190
    • Dandurand, L.M.1    Knudsen, G.R.2    Schotzko, D.J.3
  • 7
    • 0035289823 scopus 로고    scopus 로고
    • Spatial arrangements and associative behavior of species in an in vitro oral biofilm model
    • Guggenheim M., Shapiro S., Gmur R., Guggenheim B. Spatial arrangements and associative behavior of species in an in vitro oral biofilm model. Appl. Environ. Microbiol. 67:2001;1343-1350.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 1343-1350
    • Guggenheim, M.1    Shapiro, S.2    Gmur, R.3    Guggenheim, B.4
  • 8
    • 0033973010 scopus 로고    scopus 로고
    • Widefield deconvolution epifluorescence microscopy combined with fluorescence in situ hybridization reveals the spatial arrangement of bacteria in sponge tissue
    • Manz W., Arp G., Schumann-Kindel G., Szeqzyk U., Reitner J. Widefield deconvolution epifluorescence microscopy combined with fluorescence in situ hybridization reveals the spatial arrangement of bacteria in sponge tissue. J. Microbiol. Methods. 40:2000;125-134.
    • (2000) J. Microbiol. Methods , vol.40 , pp. 125-134
    • Manz, W.1    Arp, G.2    Schumann-Kindel, G.3    Szeqzyk, U.4    Reitner, J.5
  • 9
    • 0034869048 scopus 로고    scopus 로고
    • Quantification of the in situ distribution of soil bacteria by large-scale imaging of thin sections of undisturbed soil
    • Nunan N., Ritz K., Crabb D., Harris K., Wu K., Crawford J.W., Young I.M. Quantification of the in situ distribution of soil bacteria by large-scale imaging of thin sections of undisturbed soil. FEMS Microbiol. Ecol. 36:2001;67-77.
    • (2001) FEMS Microbiol. Ecol. , vol.36 , pp. 67-77
    • Nunan, N.1    Ritz, K.2    Crabb, D.3    Harris, K.4    Wu, K.5    Crawford, J.W.6    Young, I.M.7
  • 10
    • 0030833687 scopus 로고    scopus 로고
    • Spatial patterns of rhizoplane populations of Pseudomonas fluorescens
    • Dandurand L.M., Schotzko D.J., Knudsen G.R. Spatial patterns of rhizoplane populations of Pseudomonas fluorescens. Appl. Environ. Microbiol. 63:1997;3211-3217.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 3211-3217
    • Dandurand, L.M.1    Schotzko, D.J.2    Knudsen, G.R.3
  • 11
    • 0034954580 scopus 로고    scopus 로고
    • Spatial heterogeneity in the metabolism and dynamics of isoproturon degrading microbial communities in soil
    • Bending G.D., Shaw E., Walker A. Spatial heterogeneity in the metabolism and dynamics of isoproturon degrading microbial communities in soil. Biol. Fertil. Soils. 33:2001;484-489.
    • (2001) Biol. Fertil. Soils , vol.33 , pp. 484-489
    • Bending, G.D.1    Shaw, E.2    Walker, A.3
  • 12
    • 0033780249 scopus 로고    scopus 로고
    • - - oxidizing bacteria and serotypes at the millimeter scale along a soil transect
    • - - oxidizing bacteria and serotypes at the millimeter scale along a soil transect. FEMS Microbiol. Ecol. 34:2000;57-62.
    • (2000) FEMS Microbiol. Ecol. , vol.34 , pp. 57-62
    • Grundmann, G.L.1    Debouzie, D.2
  • 14
    • 0029474334 scopus 로고
    • Fatty-acid methyl-ester (FAME) profiles as measures of soil microbial community structure
    • Cavigelli M.A., Robertson G.P., Klug M.J. Fatty-acid methyl-ester (FAME) profiles as measures of soil microbial community structure. Plant Soil. 170:1995;99-113.
    • (1995) Plant Soil , vol.170 , pp. 99-113
    • Cavigelli, M.A.1    Robertson, G.P.2    Klug, M.J.3
  • 15
    • 0011160566 scopus 로고    scopus 로고
    • Spatial distribution of microbial community structure in an agricultural wheat field: fine scale variability and patterns
    • Amsterdam, The Netherlands
    • Franklin, R.B. and Mills, A.L. (2001) Spatial distribution of microbial community structure in an agricultural wheat field: fine scale variability and patterns. Presented at the 9th International Symposium on Microbial Ecology, Amsterdam, The Netherlands.
    • (2001) 9th International Symposium on Microbial Ecology
    • Franklin, R.B.1    Mills, A.L.2
  • 16
    • 0021640064 scopus 로고
    • Spatial variability in Rhizobium japonicum in two North Carolina (USA) soils
    • Wollum I.A.G., Cassel D.K. Spatial variability in Rhizobium japonicum in two North Carolina (USA) soils. Soil Sci. Soc. Am. J. 48:1984;1082-1086.
    • (1984) Soil Sci. Soc. Am. J. , vol.48 , pp. 1082-1086
    • Wollum, I.A.G.1    Cassel, D.K.2
  • 17
    • 0026616610 scopus 로고
    • Temporal and spatial variation in the nitrite-oxidizing bacterial community of a grassland soil
    • Both G.J., Gerards S., Laanbroek H.J. Temporal and spatial variation in the nitrite-oxidizing bacterial community of a grassland soil. FEMS Microbiol. Ecol. 101:1992;99-112.
    • (1992) FEMS Microbiol. Ecol. , vol.101 , pp. 99-112
    • Both, G.J.1    Gerards, S.2    Laanbroek, H.J.3
  • 18
    • 0032802594 scopus 로고    scopus 로고
    • Spatial distribution of fungal and bacterial biomass in southern Ohio hardwood forest soils: Fine scale variability and microscale patterns
    • Morris S.J. Spatial distribution of fungal and bacterial biomass in southern Ohio hardwood forest soils: fine scale variability and microscale patterns. Soil Biol. Biochem. 31:1999;1375-1386.
    • (1999) Soil Biol. Biochem. , vol.31 , pp. 1375-1386
    • Morris, S.J.1
  • 19
    • 0011158965 scopus 로고    scopus 로고
    • Spatial variability in the soil foodwebs in a contaminated grassland ecosystem
    • Kuperman R.G., Williams G.P., Parmelee R.W. Spatial variability in the soil foodwebs in a contaminated grassland ecosystem. Appl. Soil Ecol. 9:1998;509-514.
    • (1998) Appl. Soil Ecol. , vol.9 , pp. 509-514
    • Kuperman, R.G.1    Williams, G.P.2    Parmelee, R.W.3
  • 21
    • 0024258875 scopus 로고
    • Spatial variability in a succession plant community: Patterns of nitrogen availability
    • Robertson G.P., Huston M.A., Evans F.C., Tiedje J.M. Spatial variability in a succession plant community: patterns of nitrogen availability. Ecology. 69:1988;1517-1524.
    • (1988) Ecology , vol.69 , pp. 1517-1524
    • Robertson, G.P.1    Huston, M.A.2    Evans, F.C.3    Tiedje, J.M.4
  • 22
    • 18344398652 scopus 로고    scopus 로고
    • Spatial variation and patterns of soil microbial community structure in a mixed spruce-birch stand
    • Saetre P., Baath E. Spatial variation and patterns of soil microbial community structure in a mixed spruce-birch stand. Soil Biol. Biochem. 32:2000;909-917.
    • (2000) Soil Biol. Biochem. , vol.32 , pp. 909-917
    • Saetre, P.1    Baath, E.2
  • 23
    • 0342368868 scopus 로고    scopus 로고
    • The distribution of microbial communities in anaerobic and aerobic zones of a shallow coastal plain aquifer
    • Franklin R.B., Taylor D.R., Mills A.L. The distribution of microbial communities in anaerobic and aerobic zones of a shallow coastal plain aquifer. Microb. Ecol. 38:1999;377-386.
    • (1999) Microb. Ecol. , vol.38 , pp. 377-386
    • Franklin, R.B.1    Taylor, D.R.2    Mills, A.L.3
  • 24
    • 0027045621 scopus 로고
    • Scale dependence of bacterioplankton patchiness
    • Duarte C.M., Vaqué D. Scale dependence of bacterioplankton patchiness. Mar. Ecol. Prog. Ser. 84:1992;95-100.
    • (1992) Mar. Ecol. Prog. Ser. , vol.84 , pp. 95-100
    • Duarte, C.M.1    Vaqué, D.2
  • 25
    • 0021557681 scopus 로고
    • Spatial autocorrelation of plankton community composition in a continental shelf ecosystem
    • Mackas D.L. Spatial autocorrelation of plankton community composition in a continental shelf ecosystem. Limnol. Oceanogr. 29:1984;451-471.
    • (1984) Limnol. Oceanogr. , vol.29 , pp. 451-471
    • Mackas, D.L.1
  • 26
    • 0031815890 scopus 로고    scopus 로고
    • Spatial and temporal variation of phenanthrene-degrading bacteria in intertidal sediments
    • Berardesco G., Dyhrman S., Gallagher E., Shiaris M.P. Spatial and temporal variation of phenanthrene-degrading bacteria in intertidal sediments. Appl. Environ. Microbiol. 64:1998;2560-2565.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 2560-2565
    • Berardesco, G.1    Dyhrman, S.2    Gallagher, E.3    Shiaris, M.P.4
  • 28
    • 0034071156 scopus 로고    scopus 로고
    • Horizontal heterogeneity of denitrifying bacterial communities in marine sediments by terminal restriction fragment length polymorphism analysis
    • Scala D.J., Kerkhof L.J. Horizontal heterogeneity of denitrifying bacterial communities in marine sediments by terminal restriction fragment length polymorphism analysis. Appl. Environ. Microbiol. 66:2000;1980-1986.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 1980-1986
    • Scala, D.J.1    Kerkhof, L.J.2
  • 29
    • 0011230066 scopus 로고
    • Dynamics of microbial biomass and activity in five habitats of the Okefenokee Swamp ecosystem
    • Moran M.A., Maccubbin A.E., Benner R., Hodson R.E. Dynamics of microbial biomass and activity in five habitats of the Okefenokee Swamp ecosystem. Microb. Ecol. 14:1987;203-217.
    • (1987) Microb. Ecol. , vol.14 , pp. 203-217
    • Moran, M.A.1    Maccubbin, A.E.2    Benner, R.3    Hodson, R.E.4
  • 30
    • 0002276067 scopus 로고
    • Approximate analysis of variance of spatially autocorrelated regional data
    • Legendre P., Oden N.L., Sokal R.R., Vaudor A., Kim J. Approximate analysis of variance of spatially autocorrelated regional data. J. Classif. 7:1990;53-75.
    • (1990) J. Classif. , vol.7 , pp. 53-75
    • Legendre, P.1    Oden, N.L.2    Sokal, R.R.3    Vaudor, A.4    Kim, J.5
  • 32
    • 0027881344 scopus 로고
    • Spatial autocorrelation - trouble or new paradigm
    • Legendre P. Spatial autocorrelation - trouble or new paradigm. Ecology. 74:1993;1659-1673.
    • (1993) Ecology , vol.74 , pp. 1659-1673
    • Legendre, P.1
  • 33
    • 0034916458 scopus 로고    scopus 로고
    • The Signed Mantel test to cope with autocorrelation in comparative analyses
    • Oberrath R., Bohning-Gaese K. The Signed Mantel test to cope with autocorrelation in comparative analyses. J. Appl. Stat. 28:2001;725-736.
    • (2001) J. Appl. Stat. , vol.28 , pp. 725-736
    • Oberrath, R.1    Bohning-Gaese, K.2
  • 34
    • 0031696207 scopus 로고    scopus 로고
    • Geostatistical tools for characterizing the spatial variability of microbiological and physico-chemical soil properties
    • Goovaerts P. Geostatistical tools for characterizing the spatial variability of microbiological and physico-chemical soil properties. Biol. Fertil. Soils. 27:1998;315-334.
    • (1998) Biol. Fertil. Soils , vol.27 , pp. 315-334
    • Goovaerts, P.1
  • 35
    • 0024937968 scopus 로고
    • Spatial pattern and ecological analysis
    • Legendre P., Fortin M.J. Spatial pattern and ecological analysis. Vegetation. 80:1989;107-138.
    • (1989) Vegetation , vol.80 , pp. 107-138
    • Legendre, P.1    Fortin, M.J.2
  • 36
    • 0023481068 scopus 로고
    • Geostatistics in ecology: Interpolating with known variance
    • Robertson G.P. Geostatistics in ecology: interpolating with known variance. Ecology. 68:1987;744-748.
    • (1987) Ecology , vol.68 , pp. 744-748
    • Robertson, G.P.1
  • 37
    • 0026540034 scopus 로고
    • Geostatistical tools for modeling and interpreting ecological spatial dependence
    • Rossi R.E., Mulla D.J., Journel A.G., Franz E.H. Geostatistical tools for modeling and interpreting ecological spatial dependence. Ecol. Monogr. 62:1992;277-314.
    • (1992) Ecol. Monogr. , vol.62 , pp. 277-314
    • Rossi, R.E.1    Mulla, D.J.2    Journel, A.G.3    Franz, E.H.4
  • 38
    • 0033949018 scopus 로고    scopus 로고
    • Study of spatial relationships among some soil physico-chemical properties of a field in central Italy using multivariate geostatistics
    • Castrignanò A., Giugliarini L., Risaliti R., Martinelli N. Study of spatial relationships among some soil physico-chemical properties of a field in central Italy using multivariate geostatistics. Geoderma. 97:2000;39-60.
    • (2000) Geoderma , vol.97 , pp. 39-60
    • Castrignanò, A.1    Giugliarini, L.2    Risaliti, R.3    Martinelli, N.4
  • 39
    • 0029474096 scopus 로고
    • Sources of soil variation in an acid Ultisol of the Philippines
    • Dobermann A., Goovaerts P., George T. Sources of soil variation in an acid Ultisol of the Philippines. Geoderma. 68:1995;173-191.
    • (1995) Geoderma , vol.68 , pp. 173-191
    • Dobermann, A.1    Goovaerts, P.2    George, T.3
  • 40
    • 0011198079 scopus 로고    scopus 로고
    • Sampling and data analysis for environmental microbiology
    • Hurst, C.J., Crawford, R.L., Knudsen, G.R., McInerney, M.J. and Stetzenbach, L.D., Eds. American Society for Microbiology Press, Washington, DC
    • Murray, C.J. (2001) Sampling and data analysis for environmental microbiology. In: Manual of Environmental Microbiology (Hurst, C.J., Crawford, R.L., Knudsen, G.R., McInerney, M.J. and Stetzenbach, L.D., Eds.), pp. 166-177. American Society for Microbiology Press, Washington, DC.
    • (2001) Manual of Environmental Microbiology , pp. 166-177
    • Murray, C.J.1
  • 41
    • 0023526214 scopus 로고
    • Influence of sample size on measurement of soil denitrification
    • Parkin T.B., Starr J.L., Meisinger J.J. Influence of sample size on measurement of soil denitrification. Soil Sci. Soc. Am. J. 51:1987;1492-1501.
    • (1987) Soil Sci. Soc. Am. J. , vol.51 , pp. 1492-1501
    • Parkin, T.B.1    Starr, J.L.2    Meisinger, J.J.3
  • 42
    • 0030418735 scopus 로고    scopus 로고
    • On the spatial pattern of soil nutrients in desert ecosystems
    • Schlesinger W.H., Raikes J.A., Hartley A.E., Cross A.F. On the spatial pattern of soil nutrients in desert ecosystems. Ecology. 77:1996;364-374.
    • (1996) Ecology , vol.77 , pp. 364-374
    • Schlesinger, W.H.1    Raikes, J.A.2    Hartley, A.E.3    Cross, A.F.4
  • 43
    • 0017654644 scopus 로고
    • Use of Nuclepore filters for counting bacteria by fluorescent microscopy
    • Hobbie J.E., Daley R.J., Jasper S. Use of Nuclepore filters for counting bacteria by fluorescent microscopy. Appl. Environ. Microbiol. 33:1977;1225-1228.
    • (1977) Appl. Environ. Microbiol. , vol.33 , pp. 1225-1228
    • Hobbie, J.E.1    Daley, R.J.2    Jasper, S.3
  • 44
    • 85103229434 scopus 로고
    • Light microscopic methods for studying soil microorganisms
    • Weaver, R.W., Angle, S., Bottomley, P.J., Bezdicek, D.F., Smith, S., Tabitabai, A. and Wollum, A., Eds. Soil Science Society of America, Madison, WI
    • Bottomley, P.J. (1994) Light microscopic methods for studying soil microorganisms. In: Methods of Soil Analysis, Part 2: Microbiological and Biochemical Properties (Weaver, R.W., Angle, S., Bottomley, P.J., Bezdicek, D.F., Smith, S., Tabitabai, A. and Wollum, A., Eds.), pp. 81-105. Soil Science Society of America, Madison, WI.
    • (1994) Methods of Soil Analysis, Part 2: Microbiological and Biochemical Properties , pp. 81-105
    • Bottomley, P.J.1
  • 45
    • 0033056146 scopus 로고    scopus 로고
    • Characterization of microbial community structure using Randomly Amplified Polymorphic DNA (RAPD)
    • Franklin R.B., Taylor D.R., Mills A.L. Characterization of microbial community structure using Randomly Amplified Polymorphic DNA (RAPD). J. Microbiol. Methods. 35:1999;225-235.
    • (1999) J. Microbiol. Methods , vol.35 , pp. 225-235
    • Franklin, R.B.1    Taylor, D.R.2    Mills, A.L.3
  • 48
    • 0014054519 scopus 로고
    • The detection of disease clustering and a generalized regression approach
    • Mantel N. The detection of disease clustering and a generalized regression approach. Cancer Res. 27:1967;209-220.
    • (1967) Cancer Res. , vol.27 , pp. 209-220
    • Mantel, N.1
  • 49
    • 0001081152 scopus 로고
    • Testing statistical significance of geographic variation patterns
    • Sokal R. Testing statistical significance of geographic variation patterns. Syst. Zool. 28:1979;227-232.
    • (1979) Syst. Zool. , vol.28 , pp. 227-232
    • Sokal, R.1
  • 50
    • 0032904342 scopus 로고    scopus 로고
    • MANTEL-STRUCT: A program for the detection of population structure via Mantel tests
    • Miller M. MANTEL-STRUCT: A program for the detection of population structure via Mantel tests. J. Hered. 90:1999;258-259.
    • (1999) J. Hered. , vol.90 , pp. 258-259
    • Miller, M.1
  • 52
    • 0029126725 scopus 로고
    • Variations in DNA concentrations significantly affect the reproducibility of RAPD fingerprint patterns
    • Davin-Regli A., Abed Y., Charrel R.N., Bollet C., de Micco P. Variations in DNA concentrations significantly affect the reproducibility of RAPD fingerprint patterns. Res. Microbiol. 146:1995;561-568.
    • (1995) Res. Microbiol. , vol.146 , pp. 561-568
    • Davin-Regli, A.1    Abed, Y.2    Charrel, R.N.3    Bollet, C.4    De Micco, P.5
  • 53
    • 0027194612 scopus 로고
    • Factors affecting reproducibility of random amplified polymorphic DNA fingerprinting
    • Meunier J.R., Grimont P.A.D. Factors affecting reproducibility of random amplified polymorphic DNA fingerprinting. Res. Microbiol. 144:1993;373-379.
    • (1993) Res. Microbiol. , vol.144 , pp. 373-379
    • Meunier, J.R.1    Grimont, P.A.D.2
  • 54
    • 0033040633 scopus 로고    scopus 로고
    • Biomonitoring complex microbial communities using random amplified polymorphic DNA and principal component analysis
    • Wikström P., Andersson A.-C., Forsman M. Biomonitoring complex microbial communities using random amplified polymorphic DNA and principal component analysis. FEMS Microbiol. Ecol. 28:1999;131-139.
    • (1999) FEMS Microbiol. Ecol. , vol.28 , pp. 131-139
    • Wikström, P.1    Andersson, A.-C.2    Forsman, M.3
  • 55
    • 0022850822 scopus 로고
    • Belowground productivity of roots and rhizomes in a giant cordgrass (Spartina cynosuroides) marsh
    • Hackney C.T., De La Cruz A.A. Belowground productivity of roots and rhizomes in a giant cordgrass (Spartina cynosuroides) marsh. Estuaries. 9:1986;112-116.
    • (1986) Estuaries , vol.9 , pp. 112-116
    • Hackney, C.T.1    De La Cruz, A.A.2
  • 56
    • 0033943880 scopus 로고    scopus 로고
    • Whole-cell versus total RNA extraction for analysis of microbial community structure with 16S rRNA-targeted oligonucleotide probes in salt marsh sediments
    • Frischer M.E., Danforth J.M., Healy M.A.N., Saunders F.M. Whole-cell versus total RNA extraction for analysis of microbial community structure with 16S rRNA-targeted oligonucleotide probes in salt marsh sediments. Appl. Environ. Microbiol. 66:2000;3037-3043.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 3037-3043
    • Frischer, M.E.1    Danforth, J.M.2    Healy, M.A.N.3    Saunders, F.M.4
  • 57
    • 0000499143 scopus 로고
    • In situ decomposition of roots and rhizomes of two tidal marsh plants
    • Hackney C.T., De La Cruz A.A. In situ decomposition of roots and rhizomes of two tidal marsh plants. Ecology. 61:1980;226-231.
    • (1980) Ecology , vol.61 , pp. 226-231
    • Hackney, C.T.1    De La Cruz, A.A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.