Arenimonas donghaensis gen. nov., sp. nov., isolated from seashore sand

International Journal of Systematic and Evolutionary Microbiology

Volumn 57, Issue 5, 2007, Pages 954-958

  Kwon, Soon Wo ^a   Kim, Byung Yong ^a   Weon, Hang Yeon ^b   Baek, Youn Kyung ^a   Go, Seung Joo ^a  

^a National Institute of Agricultural Science   (South Korea)

^b National Institute of Animal Science   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

AMPICILLIN; CYTOSINE; ERYTHROMYCIN; FATTY ACID; FUSIDIC ACID; GENTAMICIN; GUANINE; ISOPRENOID; KANAMYCIN; LINCOMYCIN; NEOMYCIN; PENICILLIN G; QUINONE DERIVATIVE; RNA 16S; STREPTOMYCIN; UBIQUINONE;

AEROBIC BACTERIUM; ANIMAL CELL; ANTIBIOTIC RESISTANCE; ANTIBIOTIC SENSITIVITY; ARENIMONAS DONGHAENSIS; ARTICLE; BACTERIAL CELL; BACTERIAL STRAIN; BACTERIUM ISOLATION; BIOCHEMISTRY; CELL SHAPE; CHEMOTAXONOMY; COLONY FORMATION; CONTROLLED STUDY; DNA CONTENT; GAMMAPROTEOBACTERIA; GENUS; GRAM NEGATIVE BACTERIUM; KOREA; LIPID COMPOSITION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; RNA SEQUENCE; SAND; SEASHORE; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SPECIES IDENTIFICATION; STRAIN DIFFERENCE; TAXONOMY;

BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; GAMMAPROTEOBACTERIA; GENES, RRNA; KOREA; MICROSCOPY, ELECTRON, TRANSMISSION; MOLECULAR SEQUENCE DATA; PHYLOGENY; QUINONES; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID; SILICON DIOXIDE; SOIL MICROBIOLOGY; TEMPERATURE;

BACTERIA (MICROORGANISMS); GAMMAPROTEOBACTERIA; NEGIBACTERIA;

EID: 34249039512     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.64457-0     Document Type: Article

References (29)

1. Alves, M. P., Rainey, F. A., Nobre, M. F. & da Costa, M. S. (2003). Thermomonas hydrothermalis sp. nov., a new slightly thermophilic γ-proteobacterium isolated from a hot spring in central Portugal. Syst Appl Microbiol 26, 70-75.
2. Breznak J. A. & Costilow, R. N. (1994). Physicochemical factors in growth. In Methods for General and Molecular Bacteriology, pp. 137-154. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
3. Busse, H.-J., Kämpfer, P., Moore, E. R. B., Nuutinen, J., Tsitko, I. V., Denner, E. B. M., Vauterin, L., Valens, M., Rosselló-Mora, R. & Salkinoja-Salonen, M. S. (2002). Thermomonas haemolytica gen. nov., sp. nov., a γ-proteobacterium from kaofin slurry. Int J Syst Evol Microbiol 52, 473-483.
4. 2O-producing species isolated from hot springs. Int J Syst Evol Microbiol 52, 2155-2161.
5. Christensen, P. & Cook. F. D. (1978). Lysobacter, a new genus of nonfruiting, gliding bacteria with a high base ratio. Int J Syst Bacteriol 28, 367-393.
6. Felsenstein, J. (1985). Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39, 783-791.
7. 2O-producing Xanthomonas-like isolates from biofilters as Stenotrophomonas nitritireducens sp. nov., Luteimonas mephitis gen. nov., sp. nov. and Pseudoxanthomonas broegbernensis gen. nov., sp. nov. Int J Syst Evol Microbiol 50, 273-282.
8. Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
9. Garrity, G. M. & Holt J. G. (2001). The road map to the Manual. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 1, pp. 119-166. Edited by D. R. Boone, R. W. Castenholz & G. M. Garrity. New York: Springer.
10. Groth, I., Schumann, P., Weiss, N., Martin, K. & Rainey, F. A. (1996). Agrococcus jenensis gen. nov., sp. nov., a new genus of actinomycetes with diaminobutyric acid in the cell wall. Int J Syst Bacteriol 46, 234-239.
11. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
12. Kumar, S., Tamura, K. & Nei, M. (2004). MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5, 150-163.
13. Kwon, S. W., Kim, J. S., Park I. C., Yoon, S. H., Park, D. H., Lim, C. K. & Go, S. J. (2003). Pseudomonas koreensis sp. nov., Pseudomonas umsongensis sp. nov. and Pseudomonas jinjuensis sp. nov., novel species from farm soils in Korea. Int J Syst Evol Microbiol 53, 21-27.
14. Lanyi, B. (1987). Classical and rapid identification methods for medically important bacteria. Methods Microbiol 19, 1-67.
15. Lee, E. M., Jeon, C. O., Choi, I., Chang, K.-S. & Kim, C.-J. (2005). Silanimonas lenta gen. nov., sp. nov., a slightly thermophilic and alkaliphilic gammaproteobacterium. isolated from a hot spring. Int J Syst Evol Microbiol 55, 385-389.
16. Ludwig, W., Strunk O., Klugbauer, S., Klugbauer, N., Weizenegger, M., Neumaier, J., Bachleitner, M. & Schleifer, K. H. (1998). Bacterial phylogeny based on comparative sequence analysis. Electrophoresis 19, 554-568.
17. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G + C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
18. AL. In Bergey's Manual of Systematic Bacteriology, vol. 1, pp. 141-199. Edited by N. R. Krieg & J. G. Holt. Baltimore: Williams & Wilkins.
19. Palleroni, N. J. & Bradbury, J. F. (1993). Stenotrophomonas, a new bacterial genus for Xanthomonas maltophilia (Hugh 1980) Swings et al. 1983. Int J Syst Bacteriol 43, 606-609.
20. Saha, P., Krishnamurthi, S., Mayilraj, S., Prasad, G. S., Bora, T. C. & Chakrabarti, T. (2005). Aquimonas voraii gen. nov., sp. nov., a novel gammaproteobacterium. isolated from a warm spring of Assam, India. Int J Syst Evol Microbiol 55, 1491-1495.
21. Saitou, N. & Nei, M. (1987). The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
22. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
23. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
24. Sullivan, R. F., Holtman, M. A., Zylstra, G. J., White, J. F., Jr & Kobayashi, D. Y. (2003). Taxonomic positioning of two biological control agents for plant diseases as Lysobacter enzymogenes based on phylogenetic analysis of 16S rDNA, fatty acid composition and phenotypic characteristics. J Appl Microbiol 94, 1079-1086.
25. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
26. Tóth, E., Kovács, G., Schumann, P., Kovács, A. L, Steiner, U., Halbritter, A. & Márialigeti, K. (2001). Schineria larvae gen. nov., sp. nov., isolated from the 1st and 2nd larval stages of Wohlfahrtia magnifica (Diptera: Sarcophagidae). Int J Syst Evol Microbiol 51, 401-407.
27. Vauterin, L., Hoste, B., Kersters, K. & Swings, J. (1995). Reclassification of Xanthomonas. Int J Syst Bacteriol 45, 472-489.
28. Vauterin, L., Yang, P. & Swings, J. (1996). Utilization of fatty acid methyl esters for the differentiation of new Xanthomonas species. Int J Syst Bacteriol 46, 298-304.
29. Wells, J. M., Raju, B. C., Hung, H.-Y., Weisburg, W. G., Mandelco-Paul, L. & Brenner, J. (1987). Xylella fastidiosa gen. nov., sp. nov.: Gram-negative, xylem-Umited, fastidious plant bacteria related to Xanthomonas spp. Int J Syst Bacteriol 37, 136-143.