Pseudoxanthomonas taiwanensis sp. nov., a novel thermophilic, N2O-producing species isolated from hot springs

International Journal of Systematic and Evolutionary Microbiology

Volumn 52, Issue 6, 2002, Pages 2155-2161

  Chen, Mao Yen ^a   Tsay, San San ^a   Chen, Kuei Yu ^b   Shi, Yu Ching ^c   Lin, Yung Ting ^a   Lin, Guang Huey ^c  

^a NATIONAL TAIWAN UNIVERSITY   (Taiwan)

^b CHINESE CULTURE UNIVERSITY   (Taiwan)

^c TZU CHI UNIVERSITY   (Taiwan)

Author keywords

Nitrous oxide; Pseudoxanthomonas; Thermophilic

Indexed keywords

DNA 16S; FATTY ACID; NITRATE; NITRITE; NITROUS OXIDE; RIBOSOME DNA;

AEROBIC BACTERIUM; ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATE; CELL STRUCTURE; CONTROLLED STUDY; DENITRIFICATION; DNA SEQUENCE; FLAGELLUM; HETEROTROPHY; LIPID COMPOSITION; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; PSEUDOXANTHOMONAS TAIWANENSIS; SPOROGENESIS; TAIWAN; TEMPERATURE SENSITIVITY; THERMAL SPRING; THERMOPHILIC BACTERIUM; TYPE STRAIN;

BASE COMPOSITION; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; FRESH WATER; GAMMAPROTEOBACTERIA; GENES, BACTERIAL; HEAT; MICROSCOPY, ELECTRON; MOLECULAR SEQUENCE DATA; NITROUS OXIDE; PHENOTYPE; PHYLOGENY; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; TAIWAN; TERMINOLOGY; XANTHOMONAS;

BACTERIA (MICROORGANISMS); PROKARYOTA; PSEUDOXANTHOMONAS; PSEUDOXANTHOMONAS BROEGBERNENSIS; PSEUDOXANTHOMONAS TAIWANENSIS;

EID: 0036865636     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.02306-0     Document Type: Article

References (45)

1. Balderston, W. L., Sherr, B. & Payne, W. J. (1976). Blockage by acetylene of nitrous oxide reduction in Pseudomonas perfectomarinus. Appl Environ Microbiol 31, 504-508.
2. Bazylinski, D. A., Palome, E., Blakemore, N. A. & Blakemore, R. P. (1986). Denitrification by Chromobacterium violaceum. Appl Environ Microbiol 52, 696-699.
3. Brock, T. D. (1978). Thermophilic Microorganisms and Life at High Temperatures. New York: Springer-Verlag.
4. Brosius, J., Palmer, M. L., Kennedy, P. J. & Noller, H. F. (1978). Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli. Proc Natl Acad Sci U S A 75, 4801-4805.
5. Chung, A. P., Rainey, F., Nobre, M. F., Burghardt, J. & da Costa, M. S. (1997). Meiothermus cerbereus sp. nov., a new slightly thermophilic species with high levels of 3-hydroxy fatty acids. Int J Syst Bacteriol 47, 1225-1230.
6. 2O, and NO). Microbiol Rev 60, 609-640.
7. Crutzen, P. J. (1981). Atmosphere chemical process of the oxides of nitrogen, including nitrous oxide. In Denitrification, Nitrification, and Atmospheric Nitrous Oxide, pp. 17-44. Edited by C. C. Delwiche. New York: Wiley.
8. Denariaz, G., Payne, W. J. & LeGall, J. (1989). A halophilic denitrifier, Bacillus halodenitrificans sp. nov. Int J Syst Bacteriol 39, 145-151.
9. Dickinson, R. E. & Cicerone, R. J. (1986). Future global warming from atmospheric trace gases. Nature 319, 109-115.
10. 2O-producing Xanthomonas-like isolates from biofilters as Stenotrophomonas nitritireducens sp. nov., Luteimonas mephitis gen. nov., sp. nov. and Pseudoxanthomonas broegbernensis gen. nov., sp. nov. Int J Syst Evol Microbiol 50, 273-282.
11. Frunzke, K. & Meyer, O. (1990). Nitrate respiration, denitrification, and utilization of nitrogen sources by aerobic carbon monoxide-oxidizing bacteria. Arch Microbiol 154, 168-174.
12. Grant, M. A. & Payne, W. J. (1981). Denitrification by strains of Neisseria, Kingella, and Chromobacterium. Int J Syst Bacteriol 31, 276-279.
13. Greenberg, E. P. & Becker, G. E. (1977). Nitrous oxide as end product of denitrification by strains of fluorescent pseudomonads. Can J Microbiol 23, 903-907.
14. Hall, T. A. (1999). BIOEDIT: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41, 95-98.
15. Johnson, J. L. (1984). Nucleic acids in bacterial classification. In Bergey's Manual of Systematic Bacteriology, vol. 1, pp. 8-11. Edited by N. R. Krieg & J. G. Holt. Baltimore, MD: Williams & Wilkins.
16. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, pp. 21-132. Edited by H. N. Munro. New York: Academic Press.
17. Kaspar, H. F. (1982). Nitrite reduction to nitrous oxide by propioni-bacteria: detoxification mechanism. Arch Microbiol 133, 126-130.
18. Knowles, R. (1982). Denitrification. Microbiol Rev 46, 43-70.
19. Kristjansson, J. K. & Stetter, K. O. (1992). Thermophilic bacteria. In Thermophilic Bacteria, pp. 1-18. Edited by J. K. Kristjansson. New York: CRC Press.
20. Kristjansson, J. K., Hjorleifsdottir, S., Marteinsson, V. T. & Alfredsson, G. A. (1994). Thermus scotoductus, sp. nov., a pigment-producing thermophilic bacterium from hot tap water in Iceland and including Thermus sp. X-1. Syst Appl Microbiol 17, 44-50.
21. Kuykendall, L. D., Roy, M. A., O'Neill, J. J. & Devine, T. E. (1988). Fatty acids, antibiotics resistance, and deoxyribonucleic acid homology groups of Bradyrhizobium japonicum. Int J Syst Bacteriol 38, 358-361.
22. Lipski, A. & Altendorf, K. (1997). Identification of heterotrophic bacteria isolated from ammonia-supplied experimental biofilters. Syst Appl Microbiol 20, 448-457.
23. Lipski, A., Klatte, S., Bendinger, B. & Altendorf, K. (1992). Differentiation of Gram-negative, nonfermentative bacteria isolated from biofilters on the basis of fatty acid composition, quinone system, and physiological reaction profiles. Appl Environ Microbiol 58, 2053-2065.
24. Maidak, B. L., Larsen, N., McCaughey, M. J., Overbeek, R., Olsen, G. J., Fogel, K., Blandy, J. & Woese, C. R. (1994). The Ribosomal Database Project. Nucleic Acids Res 22, 3485-3487.
25. Manaia, C. M. & da Costa, M. S. (1991). Characterization of halotolerant Thermus isolates from shallow marine hot springs on S. Miguel, Azores. J Gen Microbiol 137, 2643-2648.
26. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G + C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
27. 2-fixing Spirillum lipoferum. Can J Microbiol 23, 300-305.
28. Neyra, C. A. & Van Berkum, P. (1977). Nitrate reduction nitrogenase activity in Spirillum lipoferum. Can J Microbiol 23, 306-310.
29. Payne, W. J. (1973). Reduction of nitrogenous oxides by microorganisms. Bacteriol Rev 37, 409-452.
30. Pearson, W. R. & Lipman, D. J. (1988). Improved tools for biological sequence comparison. Proc Natl Acad Sci U S A 85, 2444-2448.
31. 2O production by Nitrosomonas europaea: an examination of nitrifier denitrification. Appl Environ Microbiol 49, 1134-1141.
32. Rainey, F. A., Ward-Rainey, N., Kroppenstedt, R. M. & Stackebrandt, E. (1996). The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage: proposal of Nocardiopsaceae fam. nov. Int J Syst Bacteriol 46, 1088-1092.
33. Rossau, R., Kersters, K., Falsen, E., Jantzen, E., Segers, P., Union, A., Nehls, L. & De Ley, J. (1987). Oligella, a new genus including Oligella urethralis comb. nov. (formerly Moraxella urethralis) and Oligella ureolytica sp. nov. (formerly CDC group IVe): relationship to Taylorella equigenitalis and related taxa. Int J Syst Bacteriol 37, 198-210.
34. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
35. Santos, M. A., Williams, R. A. D. & da Costa, M. S. (1989). Numerical taxonomy of Thermus isolates from hot springs in Portugal. Syst Appl Microbiol 12, 310-315.
36. Shiba, T. (1991). Roseobacter litoralis gen. nov., sp. nov., and Roseobacter denitrificans sp. nov., aerobic pink-pigmented bacteria which contain bacteriochlorophyll a. Syst Appl Microbiol 14, 140-145.
37. Tenreiro, S., Nobre, M. F. & da Costa, M. S. (1995). Thermus silvanus sp. nov. and Thermus chliarophilus sp. nov., two new species related to Thermus ruber but with lower growth temperatures. Int J Syst Bacteriol 45, 633-639.
38. Thiemens, M. H. & Trogler, W. C. (1991). Nylon production: an unknown source of atmospheric nitrous oxide. Science 251, 932-934.
39. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
40. Vancanneyt, M., Segers, P., Torck, U., Hoste, B., Bernardet, J.-F., Vandamme, P. & Kersters, K. (1996). Reclassification of Flavobacterium odoratum (Stutzer 1929) strains to a new genus, Myroides, as Myroides odoratus comb. nov. and Myroides odoratimimus sp. nov. Int J Syst Bacteriol 46, 926-932.
41. Van den Mooter, M. & Swings, J. (1990). Numerical analysis of 295 phenotypic features of 266 Xanthomonas strains and related strains and an improved taxonomy of the genus. Int J Syst Bacteriol 40, 348-369.
42. Vieille, C. & Zeikus, G. J. (2001). Hyperthermophilic enzymes: sources, uses, and molecular mechanisms for thermostability. Microbiol Mol Biol Rev 65, 1-43.
43. Williams, R. A. D. & da Costa, M. S. (1992). The genus Thermus and related microorganisms. In The Prokaryotes, 2nd edn, pp. 3745-3753. Edited by A. Balows, H. Trüper, G. Dworkin, M. W. Harder & K.-H. Schleifer. New York: Springer-Verlag.
44. Yabuuchi, E., Kaneko, T., Yano, I., Moss, C. W. & Miyoshi, N. (1983). Sphingobacterium gen. nov., Sphingobacterium spiritivorum comb. nov., Sphingobacterium multivorum comb. nov., Sphingobacterium mizutae sp. nov., and Flavobacterium indologenes sp. nov.: glucose-nonfermenting Gram-negative rods in CDC groups IIK-2 and IIb. Int J Syst Bacteriol 33, 580-598.
45. Zumft, W. G. (1997). Cell biology and molecular basis of denitrification. Microbiol Mol Biol Rev 61, 533-616.