-
1
-
-
0035179871
-
Assembly of microarrays for genome-wide measurement of DNA copy number
-
11687795
-
Snijders AM Nowak N Segraves R Blackwood S Brown N Conroy J Hamilton G Hindle AK Huey B Kimura K Law S Myambo K Palmer J Ylstra B Yue JP Gray JW Jain AN Pinkel D Albertson DG Assembly of microarrays for genome-wide measurement of DNA copy number Nat Genet 2001 29 3 263-264 11687795
-
(2001)
Nat Genet
, vol.29
, Issue.3
, pp. 263-264
-
-
Snijders, A.M.1
Nowak, N.2
Segraves, R.3
Blackwood, S.4
Brown, N.5
Conroy, J.6
Hamilton, G.7
Hindle, A.K.8
Huey, B.9
Kimura, K.10
Law, S.11
Myambo, K.12
Palmer, J.13
Ylstra, B.14
Yue, J.P.15
Gray, J.W.16
Jain, A.N.17
Pinkel, D.18
Albertson, D.G.19
-
2
-
-
0032823523
-
Genome-wide analysis of DNA copy-number changes using cDNA microarrays
-
10471496
-
Pollack JR Perou CM Alizadeh AA Eisen MB Pergamenschikov A Williams CF Jeffrey SS Botstein D Brown PO Genome-wide analysis of DNA copy-number changes using cDNA microarrays Nat Genet 1999 23 1 41-46 10471496
-
(1999)
Nat Genet
, vol.23
, Issue.1
, pp. 41-46
-
-
Pollack, J.R.1
Perou, C.M.2
Alizadeh, A.A.3
Eisen, M.B.4
Pergamenschikov, A.5
Williams, C.F.6
Jeffrey, S.S.7
Botstein, D.8
Brown, P.O.9
-
3
-
-
18344392245
-
Genome scanning with array CGH delineates regional alterations in mouse islet carcinomas
-
11694878
-
Hodgson G Hager JH Volik S Hariono S Wernick M Moore D Nowak N Albertson DG Pinkel D Collins C Hanahan D Gray JW Genome scanning with array CGH delineates regional alterations in mouse islet carcinomas Nat Genet 2001 29 4 459-464 11694878
-
(2001)
Nat Genet
, vol.29
, Issue.4
, pp. 459-464
-
-
Hodgson, G.1
Hager, J.H.2
Volik, S.3
Hariono, S.4
Wernick, M.5
Moore, D.6
Nowak, N.7
Albertson, D.G.8
Pinkel, D.9
Collins, C.10
Hanahan, D.11
Gray, J.W.12
-
4
-
-
33746108159
-
A sequence-oriented comparison of gene expression measurements across different hybridization-based technologies
-
16823376
-
Kuo WP Liu F Trimarchi J Punzo C Lombardi M Sarang J Whipple ME Maysuria M Serikawa K Lee SY McCrann D Kang J Shearstone JR Burke J Park DJ Wang X Rector TL Ricciardi-Castagnoli P Perrin S Choi S Bumgarner R Kim JH Short GF 3rd Freeman MW Seed B Jensen R Church GM Hovig E Cepko CL Park P Ohno-Machado L Jenssen TK A sequence-oriented comparison of gene expression measurements across different hybridization-based technologies Nat Biotechnol 2006 24 7 832-840 16823376
-
(2006)
Nat Biotechnol
, vol.24
, Issue.7
, pp. 832-840
-
-
Kuo, W.P.1
Liu, F.2
Trimarchi, J.3
Punzo, C.4
Lombardi, M.5
Sarang, J.6
Whipple, M.E.7
Maysuria, M.8
Serikawa, K.9
Lee, S.Y.10
McCrann, D.11
Kang, J.12
Shearstone, J.R.13
Burke, J.14
Park, D.J.15
Wang, X.16
Rector, T.L.17
Ricciardi-Castagnoli, P.18
Perrin, S.19
Choi, S.20
Bumgarner, R.21
Kim, J.H.22
Short III, G.F.23
Freeman, M.W.24
Seed, B.25
Jensen, R.26
Church, G.M.27
Hovig, E.28
Cepko, C.L.29
Park, P.30
Ohno-Machado, L.31
Jenssen, T.K.32
more..
-
6
-
-
33748491517
-
The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements
-
16964229
-
Shi L Reid LH Jones WD Shippy R Warrington JA Baker SC Collins PJ de Longueville F Kawasaki ES Lee KY Luo Y Sun YA Willey JM Setterquist RA Fischer GM Tong W Dragan YP Dix DJ Frueh FW Goodsaid FM Herman D Jensen RV Johnson CD Lobenhofer EK Puri RK Schrf U Thierry-Mieg J Wang C Wilson M Wolber PK Zhang L Slikker W Jr. Shi L Reid LH The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements Nat Biotechnol 2006 24 9 1151-1161 16964229
-
(2006)
Nat Biotechnol
, vol.24
, Issue.9
, pp. 1151-1161
-
-
Shi, L.1
Reid, L.H.2
Jones, W.D.3
Shippy, R.4
Warrington, J.A.5
Baker, S.C.6
Collins, P.J.7
de Longueville, F.8
Kawasaki, E.S.9
Lee, K.Y.10
Luo, Y.11
Sun, Y.A.12
Willey, J.M.13
Setterquist, R.A.14
Fischer, G.M.15
Tong, W.16
Dragan, Y.P.17
Dix, D.J.18
Frueh, F.W.19
Goodsaid, F.M.20
Herman, D.21
Jensen, R.V.22
Johnson, C.D.23
Lobenhofer, E.K.24
Puri, R.K.25
Schrf, U.26
Thierry-Mieg, J.27
Wang, C.28
Wilson, M.29
Wolber, P.K.30
Zhang, L.31
Slikker Jr., W.32
Shi, L.33
Reid, L.H.34
more..
-
7
-
-
10744233914
-
A tiling resolution DNA microarray with complete coverage of the human genome
-
14981516
-
Ishkanian AS Malloff CA Watson SK DeLeeuw RJ Chi B Coe BP Snijders A Albertson DG Pinkel D Marra MA Ling V MacAulay C Lam WL A tiling resolution DNA microarray with complete coverage of the human genome Nat Genet 2004 36 3 299-303 14981516
-
(2004)
Nat Genet
, vol.36
, Issue.3
, pp. 299-303
-
-
Ishkanian, A.S.1
Malloff, C.A.2
Watson, S.K.3
DeLeeuw, R.J.4
Chi, B.5
Coe, B.P.6
Snijders, A.7
Albertson, D.G.8
Pinkel, D.9
Marra, M.A.10
Ling, V.11
MacAulay, C.12
Lam, W.L.13
-
8
-
-
4444291843
-
Detection of large-scale variation in the human genome
-
15286789
-
Iafrate AJ Feuk L Rivera MN Listewnik ML Donahoe PK Qi Y Scherer SW Lee C Detection of large-scale variation in the human genome Nat Genet 2004 36 9 949-951 15286789
-
(2004)
Nat Genet
, vol.36
, Issue.9
, pp. 949-951
-
-
Iafrate, A.J.1
Feuk, L.2
Rivera, M.N.3
Listewnik, M.L.4
Donahoe, P.K.5
Qi, Y.6
Scherer, S.W.7
Lee, C.8
-
9
-
-
31144449056
-
Human and mouse oligonucleotide-based array CGH
-
1316119
-
van den Ijssel P Tijssen M Chin SF Eijk P Carvalho B Hopmans E Holstege H Bangarusamy DK Jonkers J Meijer GA Caldas C Ylstra B Human and mouse oligonucleotide-based array CGH Nucleic Acids Res 2005 33 22 e192 1316119 16361265
-
(2005)
Nucleic Acids Res
, vol.33
, Issue.22
-
-
van den Ijssel, P.1
Tijssen, M.2
Chin, S.F.3
Eijk, P.4
Carvalho, B.5
Hopmans, E.6
Holstege, H.7
Bangarusamy, D.K.8
Jonkers, J.9
Meijer, G.A.10
Caldas, C.11
Ylstra, B.12
-
10
-
-
19944418773
-
Comparative genomic hybridization using oligonucleotide microarrays and total genomic DNA
-
535426 15591353
-
Barrett MT Scheffer A Ben-Dor A Sampas N Lipson D Kincaid R Tsang P Curry B Baird K Meltzer PS Yakhini Z Bruhn L Laderman S Comparative genomic hybridization using oligonucleotide microarrays and total genomic DNA Proc Natl Acad Sci U S A 2004 101 51 17765-17770 535426 15591353
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, Issue.51
, pp. 17765-17770
-
-
Barrett, M.T.1
Scheffer, A.2
Ben-Dor, A.3
Sampas, N.4
Lipson, D.5
Kincaid, R.6
Tsang, P.7
Curry, B.8
Baird, K.9
Meltzer, P.S.10
Yakhini, Z.11
Bruhn, L.12
Laderman, S.13
-
11
-
-
12144290701
-
Acute myeloid leukemia with complex karyotypes and abnormal chromosome 21: Amplification discloses overexpression of APP, ETS2, and ERG genes
-
374344 15007164
-
Baldus CD Liyanarachchi S Mrozek K Auer H Tanner SM Guimond M Ruppert AS Mohamed N Davuluri RV Caligiuri MA Bloomfield CD de la Chapelle A Acute myeloid leukemia with complex karyotypes and abnormal chromosome 21: Amplification discloses overexpression of APP, ETS2, and ERG genes Proc Natl Acad Sci U S A 2004 101 11 3915-3920 374344 15007164
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, Issue.11
, pp. 3915-3920
-
-
Baldus, C.D.1
Liyanarachchi, S.2
Mrozek, K.3
Auer, H.4
Tanner, S.M.5
Guimond, M.6
Ruppert, A.S.7
Mohamed, N.8
Davuluri, R.V.9
Caligiuri, M.A.10
Bloomfield, C.D.11
de la Chapelle, A.12
-
12
-
-
33748057487
-
Identifying Allelic Loss and Homozygous Deletions in Pancreatic Cancer without Matched Normals Using High-Density Single-Nucleotide Polymorphism Arrays
-
16912165
-
Calhoun ES Hucl T Gallmeier E West KM Arking DE Maitra A Iacobuzio-Donahue CA Chakravarti A Hruban RH Kern SE Identifying Allelic Loss and Homozygous Deletions in Pancreatic Cancer without Matched Normals Using High-Density Single-Nucleotide Polymorphism Arrays Cancer Res 2006 66 16 7920-7928 16912165
-
(2006)
Cancer Res
, vol.66
, Issue.16
, pp. 7920-7928
-
-
Calhoun, E.S.1
Hucl, T.2
Gallmeier, E.3
West, K.M.4
Arking, D.E.5
Maitra, A.6
Iacobuzio-Donahue, C.A.7
Chakravarti, A.8
Hruban, R.H.9
Kern, S.E.10
-
13
-
-
2342453338
-
An integrated view of copy number and allelic alterations in the cancer genome using single nucleotide polymorphism arrays
-
15126342
-
Zhao X Li C Paez JG Chin K Janne PA Chen TH Girard L Minna J Christiani D Leo C Gray JW Sellers WR Meyerson M An integrated view of copy number and allelic alterations in the cancer genome using single nucleotide polymorphism arrays Cancer Res 2004 64 9 3060-3071 15126342
-
(2004)
Cancer Res
, vol.64
, Issue.9
, pp. 3060-3071
-
-
Zhao, X.1
Li, C.2
Paez, J.G.3
Chin, K.4
Janne, P.A.5
Chen, T.H.6
Girard, L.7
Minna, J.8
Christiani, D.9
Leo, C.10
Gray, J.W.11
Sellers, W.R.12
Meyerson, M.13
-
14
-
-
32644441984
-
BAC to the future! or oligonucleotides: A perspective for micro array comparative genomic hybridization (array CGH)
-
1356528 16439806
-
Ylstra B van den Ijssel P Carvalho B Brakenhoff RH Meijer GA BAC to the future! or oligonucleotides: A perspective for micro array comparative genomic hybridization (array CGH) Nucleic Acids Res 2006 34 2 445-450 1356528 16439806
-
(2006)
Nucleic Acids Res
, vol.34
, Issue.2
, pp. 445-450
-
-
Ylstra, B.1
van den Ijssel, P.2
Carvalho, B.3
Brakenhoff, R.H.4
Meijer, G.A.5
-
15
-
-
23244467697
-
Genome-wide aberrations in pancreatic adenocarcinoma
-
16080956
-
Nowak NJ Gaile D Conroy JM McQuaid D Cowell J Carter R Goggins MG Hruban RH Maitra A Genome-wide aberrations in pancreatic adenocarcinoma Cancer Genet Cytogenet 2005 161 1 36-50 16080956
-
(2005)
Cancer Genet Cytogenet
, vol.161
, Issue.1
, pp. 36-50
-
-
Nowak, N.J.1
Gaile, D.2
Conroy, J.M.3
McQuaid, D.4
Cowell, J.5
Carter, R.6
Goggins, M.G.7
Hruban, R.H.8
Maitra, A.9
-
16
-
-
7244245762
-
Finishing the euchromatic sequence of the human genome
-
15496913
-
Finishing the euchromatic sequence of the human genome Nature 2004 431 7011 931-945 15496913
-
(2004)
Nature
, vol.431
, pp. 931-945
-
-
-
18
-
-
0030966604
-
Comparative genomic hybridization (CGH) analysis of neuroblastomas - An important methodological approach in paediatric tumour pathology
-
9196436
-
Brinkschmidt C Christiansen H Terpe HJ Simon R Boecker W Lampert F Stoerkel S Comparative genomic hybridization (CGH) analysis of neuroblastomas - an important methodological approach in paediatric tumour pathology J Pathol 1997 181 4 394-400 9196436
-
(1997)
J Pathol
, vol.181
, Issue.4
, pp. 394-400
-
-
Brinkschmidt, C.1
Christiansen, H.2
Terpe, H.J.3
Simon, R.4
Boecker, W.5
Lampert, F.6
Stoerkel, S.7
-
19
-
-
33745700217
-
Integrative genomics identifies distinct molecular classes of neuroblastoma and shows that multiple genes are targeted by regional alterations in DNA copy number
-
16778177
-
Wang Q Diskin S Rappaport E Attiyeh E Mosse Y Shue D Seiser E Jagannathan J Shusterman S Bansal M Khazi D Winter C Okawa E Grant G Cnaan A Zhao H Cheung NK Gerald W London W Matthay KK Brodeur GM Maris JM Integrative genomics identifies distinct molecular classes of neuroblastoma and shows that multiple genes are targeted by regional alterations in DNA copy number Cancer Res 2006 66 12 6050-6062 16778177
-
(2006)
Cancer Res
, vol.66
, Issue.12
, pp. 6050-6062
-
-
Wang, Q.1
Diskin, S.2
Rappaport, E.3
Attiyeh, E.4
Mosse, Y.5
Shue, D.6
Seiser, E.7
Jagannathan, J.8
Shusterman, S.9
Bansal, M.10
Khazi, D.11
Winter, C.12
Okawa, E.13
Grant, G.14
Cnaan, A.15
Zhao, H.16
Cheung, N.K.17
Gerald, W.18
London, W.19
Matthay, K.K.20
Brodeur, G.M.21
Maris, J.M.22
more..
-
20
-
-
0037366067
-
Neuroblastoma: Biological insights into a clinical enigma
-
12612655
-
Brodeur GM Neuroblastoma: Biological insights into a clinical enigma Nat Rev Cancer 2003 3 3 203-216 12612655
-
(2003)
Nat Rev Cancer
, vol.3
, Issue.3
, pp. 203-216
-
-
Brodeur, G.M.1
-
21
-
-
33645124027
-
Bias of Selection on Human Copy-Number Variants
-
1366494 16482228
-
Nguyen DQ Webber C Ponting CP Bias of Selection on Human Copy-Number Variants PLoS Genet 2006 2 2 e20 1366494 16482228
-
(2006)
PLoS Genet
, vol.2
, Issue.2
-
-
Nguyen, D.Q.1
Webber, C.2
Ponting, C.P.3
-
23
-
-
2442697761
-
Combined subtractive cDNA cloning and array CGH: An efficient approach for identification of overexpressed genes in DNA amplicons
-
365025 15018647
-
De Preter K Pattyn F Berx G Strumane K Menten B Van Roy F De Paepe A Speleman F Vandesompele J Combined subtractive cDNA cloning and array CGH: An efficient approach for identification of overexpressed genes in DNA amplicons BMC Genomics 2004 5 1 11 365025 15018647
-
(2004)
BMC Genomics
, vol.5
, Issue.1
, pp. 11
-
-
De Preter, K.1
Pattyn, F.2
Berx, G.3
Strumane, K.4
Menten, B.5
Van Roy, F.6
De Paepe, A.7
Speleman, F.8
Vandesompele, J.9
-
24
-
-
29444438167
-
Widening the spectrum of human genetic variation
-
16380720
-
Eichler EE Widening the spectrum of human genetic variation Nat Genet 2006 38 1 9 11 16380720
-
(2006)
Nat Genet
, vol.38
, Issue.1
, pp. 9-11
-
-
Eichler, E.E.1
-
25
-
-
0036782903
-
Determining the one, two, three, or four long and short loci of human complement C4 in a major histocompatibility complex haplotype encoding C4A or C4B proteins
-
378538 12224044
-
Chung EK Yang Y Rupert KL Jones KN Rennebohm RM Blanchong CA Yu CY Determining the one, two, three, or four long and short loci of human complement C4 in a major histocompatibility complex haplotype encoding C4A or C4B proteins Am J Hum Genet 2002 71 4 810-822 378538 12224044
-
(2002)
Am J Hum Genet
, vol.71
, Issue.4
, pp. 810-822
-
-
Chung, E.K.1
Yang, Y.2
Rupert, K.L.3
Jones, K.N.4
Rennebohm, R.M.5
Blanchong, C.A.6
Yu, C.Y.7
-
26
-
-
3242808027
-
Large-scale copy number polymorphism in the human genome
-
15273396
-
Sebat J Lakshmi B Troge J Alexander J Young J Lundin P Maner S Massa H Walker M Chi M Navin N Lucito R Healy J Hicks J Ye K Reiner A Gilliam TC Trask B Patterson N Zetterberg A Wigler M Large-scale copy number polymorphism in the human genome Science 2004 305 5683 525-528 15273396
-
(2004)
Science
, vol.305
, Issue.5683
, pp. 525-528
-
-
Sebat, J.1
Lakshmi, B.2
Troge, J.3
Alexander, J.4
Young, J.5
Lundin, P.6
Maner, S.7
Massa, H.8
Walker, M.9
Chi, M.10
Navin, N.11
Lucito, R.12
Healy, J.13
Hicks, J.14
Ye, K.15
Reiner, A.16
Gilliam, T.C.17
Trask, B.18
Patterson, N.19
Zetterberg, A.20
Wigler, M.21
more..
-
27
-
-
34248674308
-
Functional Genomics Core
-
Functional Genomics Core http://www.dnaarrays.org/CNP.php
-
-
-
-
28
-
-
0036226603
-
BLAT - The BLAST-like alignment tool
-
187518 11932250
-
Kent WJ BLAT - the BLAST-like alignment tool Genome Res 2002 12 4 656-664 187518 11932250
-
(2002)
Genome Res
, vol.12
, Issue.4
, pp. 656-664
-
-
Kent, W.J.1
-
29
-
-
34248640040
-
-
Index of /goldenPath/hg17/database
-
Index of /goldenPath/hg17/database http://hgdownload.cse.ucsc.edu/ goldenPath/hg17/database/
-
-
-
-
31
-
-
34248676488
-
-
Roswell Park Cancer Institute
-
Roswell Park Cancer Institute http://microarrays.roswellpark.org
-
-
-
-
32
-
-
1642267572
-
Identification and characterisation of constitutional chromosome abnormalities using arrays of bacterial artificial chromosomes
-
14970865
-
Cowell JK Wang YD Head K Conroy J McQuaid D Nowak NJ Identification and characterisation of constitutional chromosome abnormalities using arrays of bacterial artificial chromosomes Br J Cancer 2004 90 4 860-865 14970865
-
(2004)
Br J Cancer
, vol.90
, Issue.4
, pp. 860-865
-
-
Cowell, J.K.1
Wang, Y.D.2
Head, K.3
Conroy, J.4
McQuaid, D.5
Nowak, N.J.6
-
33
-
-
84882437055
-
UCSC Genome Browser Home
-
UCSC Genome Browser Home http://genome.ucsc.edu
-
-
-
-
34
-
-
20544462642
-
Segmental duplications and copy-number variation in the human genome
-
1226196 15918152
-
Sharp AJ Locke DP McGrath SD Cheng Z Bailey JA Vallente RU Pertz LM Clark RA Schwartz S Segraves R Oseroff VV Albertson DG Pinkel D Eichler EE Segmental duplications and copy-number variation in the human genome Am J Hum Genet 2005 77 1 78-88 1226196 15918152
-
(2005)
Am J Hum Genet
, vol.77
, Issue.1
, pp. 78-88
-
-
Sharp, A.J.1
Locke, D.P.2
McGrath, S.D.3
Cheng, Z.4
Bailey, J.A.5
Vallente, R.U.6
Pertz, L.M.7
Clark, R.A.8
Schwartz, S.9
Segraves, R.10
Oseroff, V.V.11
Albertson, D.G.12
Pinkel, D.13
Eichler, E.E.14
-
35
-
-
22844451617
-
Fine-scale structural variation of the human genome
-
15895083
-
Tuzun E Sharp AJ Bailey JA Kaul R Morrison VA Pertz LM Haugen E Hayden H Albertson D Pinkel D Olson MV Eichler EE Fine-scale structural variation of the human genome Nat Genet 2005 37 7 727-732 15895083
-
(2005)
Nat Genet
, vol.37
, Issue.7
, pp. 727-732
-
-
Tuzun, E.1
Sharp, A.J.2
Bailey, J.A.3
Kaul, R.4
Morrison, V.A.5
Pertz, L.M.6
Haugen, E.7
Hayden, H.8
Albertson, D.9
Pinkel, D.10
Olson, M.V.11
Eichler, E.E.12
-
36
-
-
34147104969
-
A faster circular binary segmentation algorithm for the analysis of array CGH data
-
17234643
-
Venkatraman ES Olshen AB A faster circular binary segmentation algorithm for the analysis of array CGH data Bioinformatics 2007 17234643
-
(2007)
Bioinformatics
-
-
Venkatraman, E.S.1
Olshen, A.B.2
-
37
-
-
3543105225
-
Circular binary segmentation for the analysis of array-based DNA copy number data
-
15475419
-
Olshen AB Venkatraman ES Lucito R Wigler M Circular binary segmentation for the analysis of array-based DNA copy number data Biostatistics 2004 5 4 557-572 15475419
-
(2004)
Biostatistics
, vol.5
, Issue.4
, pp. 557-572
-
-
Olshen, A.B.1
Venkatraman, E.S.2
Lucito, R.3
Wigler, M.4
-
38
-
-
27544483495
-
Comparative analysis of algorithms for identifying amplifications and deletions in array CGH data
-
16081473
-
Lai WR Johnson MD Kucherlapati R Park PJ Comparative analysis of algorithms for identifying amplifications and deletions in array CGH data Bioinformatics 2005 21 19 3763-3770 16081473
-
(2005)
Bioinformatics
, vol.21
, Issue.19
, pp. 3763-3770
-
-
Lai, W.R.1
Johnson, M.D.2
Kucherlapati, R.3
Park, P.J.4
-
39
-
-
34248683834
-
-
Gene Expression Omnibus (GEO) main page
-
Gene Expression Omnibus (GEO) main page http://www.ncbi.nlm.nih.gov/ projects/geo
-
-
-
|