Analysis of (bio)geochemical kinetics of Fe(III) oxides

CMS Workshop Lectures

Volumn 14, Issue , 2006, Pages 79-116

  Brantley, Susan L ^a   Ruebush, Shane ^a   Jang, Je Hun ^a   Tien, Ming ^a  

^a PENNSYLVANIA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOGEOCHEMISTRY; CATALYSIS; DISSOLUTION; ENZYME; GOETHITE; IRON OXIDE; LIGAND; REACTION KINETICS;

EID: 34248673442     PISSN: 1521740X     EISSN: None     Source Type: Book Series    
DOI: 10.1346/cms-wls-14.3     Document Type: Article

References (90)

1. Afonso M. D. and Stumm W. (1992) Reductive Dissolution of Iron(III) (Hydr)Oxides by Hydrogen-Sulfide. Langmuir 8(6), 1671-1675.
2. Ali S. P., Blesa M. A., Morando P. J., and Regazzoni A. E. (1996) Reductive dissolution of hematite in acidic iodide solutions. Langmuir 12(20), 4934-4939.
3. Amirbahman A., Sigg L., and vonGunten U. (1997) Reductive dissolution of Fe(III) (hydr)oxides by cysteine: Kinetics and mechanism. Journal of Colloid and Interface Science 194(1), 194-206.
4. Amrhein C. and Suarez D. L. (1988) The use of a surface complexation model to describe the kinetics of ligand-promoted dissolution of anorthite. Geochimica et Cosmochimica Acta 52, 2785-2793.
5. Arnold R. G., DiChistina T. J., and Hoffmann M. R. (1988) Reductive dissolution of Fe(III) oxides by Pseudomonas sp. 200. Biotechnology and Bioengineering 32, 1081-1096.
6. Banfield J. F. and Hamers R. J. (1997) Processes at minerals and surfaces with relevance to microorganisms and prebiotic synthesis. In Geomicrobiology: Interactions Between Microbes and Minerals, Vol. 35 (ed. J. F. Banfield and K. H. Nealson), pp. 81-122. Mineralogical Society of America.
7. 3) by ascorbate. Colloids and Surfaces 39(4), 303-309.
8. Bennett P. C., Hiebert F. K., and Choi W. J. (1996) Microbial colonization and weathering of silicates in a petroleum-contaminated groundwater. Chemical Geology 132, 45-53.
9. Biber M. V. and Stumm W. (1994) An In-situ ATR-FTIR study: the surface coordination of salicylic acid on aluminum and iron (III) oxides. Environmental Science and Technology 28, 763-768.
10. Brantley S. L. (2004) Reaction kinetics of primary rock-forming minerals under ambient conditions. In Surface and Ground Water, Weathering, and Soils, Vol. 5 (ed. J. I. Drever), pp. 73-118. Elsevier.
11. Brantley S. L., Guynn R. L., Liermann L. J., Anbar A., Barling J., and Icopini G. (2004) Fe isotopic fractionation during mineral dissolution with and without bacteria. Geochimica Cosmochimica Acta 68(15), 3189-3204.
12. Brantley S. L. and Stillings L. L. (1996) Feldspar dissolution at 25°C and low pH. American Journal of Science 296, 101-127.
13. Bumpus J. A., Tien M., Wright D., and Aust S. D. (1985) Oxidation of persistent environmental pollutants by a white rot fungus. Science 228(4706), 1434-1436.
14. Burgos W. D., Royer R. A., Fang Y., Yeh G.-T., Fisher A. S., Jeon B.-H., and Dempsey B. A. (2002) Theoretical and experimental considerations related to reaction-based modeling: A case study using Iron(III) oxide bioreduction. Geomicrobiology Journal 19, 253-287.
15. Casey W. H., Banfield J. F., Westrich H. R., and McLaughlin L. (1993) What do dissolution experiments tell us about natural weathering? Chemical Geology 105(1-3), 1-15.
16. Cervini-Silva J. and Sposito G. (2002) Steady-state dissolution kinetics of aluminum-goethite in the presence of desferrioxamine-B and oxalate ligands. Environmental Science & Technology 36(3), 337-342.
17. Cheah S.-F., Kraemer S. M., Cervini-Silva J., and Sposito G. (2003) Steady-state dissolution kinetics of goethite in the presence of Desferrioxamine B and oxalate ligands: implications for the microbial acquisition of iron. Chemical Geology 198, 63-75.
18. Chin P. K. F. and Mills G. L. (1991) Kinetics and mechanism of kaolinite dissolution - effects of organic ligands. Chemical Geology 90, 307-317.
19. Chou L. and Wollast R. (1985) Steady-state kinetics and dissolution mechanisms of albite. American Journal of Science 285, 963-993.
20. Cleland W. W. (1975) Partition analysis and the concept of net rate constant as tools in enzyme kinetics. Biochemistry 14, 3220-3224.
21. Cocozza C., Tsao C. C. G., Cheah S.-F., Kraemer S. M., Raymond K. N., Miano T. M., and Sposito G. (2002) Temperature dependence of goethite dissolution promoted by trihydroxamate siderophores. Geochimica Cosmochimica Acta 66, 431-438.
22. Cornell R. M. and Schwertmann U. (2003) The Fe Oxides: Structure, Properties, Reactions, Occurrences and Uses. VCH.
23. Dagley S. (1971) Catabolism of aromatic compounds by micro-organisms. Adv Microb Physiol 6(0), 1-46.
24. Dagley S. (1978) Microbial catabolism, the carbon cycle and environmental pollution. Naturwissenschaften 65(2), 85-95.
25. Dagley S., Fewster M. E., and Happold F. C. (1953) The bacterial oxidation of aromatic compounds. J Gen Microbiol 8(1), 1-7.
26. Deng Y. W. and Stumm W. (1994) Reactivity of Aquatic Iron(Iii) Oxyhydroxides Implications for Redox Cycling of Iron in Natural-Waters. Applied Geochemistry 9(1), 23-36.
27. Dobbin P. S., Powell A. K., McEwan A. G., and Richardson D. J. (1995) The influence of chelating agents upon the dissimilatory reduction of Fe(III) by Shewanella putrefaciens. BioMetals 1995(8), 163-173.
28. Drever J. I. and Stillings L. (1997) The role of organic acids in mineral weathering. Colloids and Surfaces 120, 167-181.
29. Ehrlich H. L. (1990) Geomicrobiology. Marcell Dekker.
30. Ehrlich H. L. (1996) How microbes influence mineral growth and dissolution. Chemical Geology 132, 5-9.
31. Fredrickson J. K., Zachara J. M., Kennedy D. W., Dong H. L., Onstott T. C., Hinman N. W., and Li S. M. (1998) Biogenic iron mineralization accompanying the dissimilatory reduction of hydrous ferric oxide by a groundwater bacterium. Geochimica et Cosmochimica Acta 62(19-20), 3239-3257.
32. 3 and BeO. Geochimica et Cosmochimica Acta 50, 1847-1860.
33. Glenn J. K., Akileswaran L., and Gold M. H. (1986) Mn(II) oxidation is the principal function of the extracellular Mn-peroxidase from Phanerochaete Chrysosporium. Arch. Biochem. Biophys. 251(2), 688-696.
34. Haas J. R. and DiChristina T. J. (2002) Effects of Fe(III) chemical speciation on dissimilatory Fe(III) reduction by Shewanella putrefaciens. Environ. Sci. Technol. 36(3), 373-380.
35. Hering J. G. and Stumm W. (1991) Fluorescence spectroscopic evidence for surface complex formation at the mineral-water interface: elucidation of the mechanism of ligand-promoted dissolution. Langmuir 7, 1567-1570.
36. Hill C. G. (1977) An Introduction to Chemical Engineering Kinetics and Reactor Design. John Wiley & Sons, Inc.
37. Holmen B. A. and Casey W. H. (1996) Hydroxymate ligands, surface chemistry, and the mechanism of ligand-promoted dissolution of goethite [α-FeOOH(s)]. Geochimica et Cosmochimica Acta 60, 4403-4416.
38. Kalinowski B. E., Liermann L. J., Brantley S. L., Barnes A., and Pantano C. G. (2000a) X-ray photoelectron evidence for bacteria-enhanced dissolution of hornblende. Geochimica et Cosmochimica Acta 64(8), 1331-1343.
39. Kalinowski B. E., Liermann L. J., Givens S., and Brantley S. L. (2000b) Rates of bacteria-promoted solubilization of Fe from minerals: a review of problems and approaches. Chemical Geology 169, 357-370.
40. King E. L. and Altman C. (1956) A schematic method of deriving the rate laws for enzyme-catalyzed reactions. J. Phys. Chem. 60, 1375-1378.
41. Koduri R. S. and Tien M. (1995) Oxidation of guaiacol by lignin peroxidase. Role of veratryl alcohol. J. Biol. Chem. 270(38), 22254-22258.
42. Kraemer S. M. (2004) Iron oxide dissolution and solubility in the presence of siderophores. Aquatic Science 66, 3-18.
43. Kraemer S. M., Cheah S.-F., Zapf R., Xu J., Raymond K. N., and Sposito G. (1999) Effect of hydroxamate siderophores on Fe release and Pb(II) adsorption by goethite. Geochimica Cosmochimica Acta 63, 3003-3008.
44. Kraemer S. M. and Hering J. G. (1997) Influence of solution saturation state on the kinetics of ligand-controlled dissolution of aluminum oxide. Geochimica Cosmochimica Acta 61, 2855-2866.
45. Kuan I. C., Johnson K. A., and Tien M. (1993) Kinetic analysis of manganese peroxidase: the reaction with manganese complexes. J. Biol. Chem. 268(27), 20064-20070.
46. Kubicki J. D., Schroeter L. M., Itoh M. J., Nguyen B. N., and Apitz S. E. (1999) Attenuated total reflectance Fourier-transform infrared spectroscopy of carboxylic acids adsorbed onto mineral surfaces. Geochimica Cosmochimica Acta 63, 2709-2725.
47. Laidler K. J. (1987) Chemical Kinetics. Harper and Row.
48. LaKind J. S. and Stone A. T. (1989) Reductive dissolution of goethite by phenolic reductants. Geochimica Cosmochemica Acta 53, 961-971.
49. Larsen O. and Postma D. (2001) Kinetics of reductive bulk dissolution of lepidocrocite, ferrihydrite, and goethite. Geochimica Cosmochimica Acta 65(9), 1367-1379.
50. Liang L., Rieke P. C., Liu J., Fryxell G. E., Young J. S., Engelhard M. H., and Alford K. L. (2000) Surfaces with Reversible Hydrophilic/ Hydrophobic Characteristics on Cross-linked Poly (N-isopropylacrylamide) Hydrogels. Langmuir 16, 8016-8023.
51. Liang W. A. and Christeller J. T. (1976) A model for the kinetics of activation and catalysis of ribulose 1,5-bisphosphate carboxylase. Biochem. J. 159, 563-570.
52. Liu C., Zachara J., Gorby Y. A., Szecsody J. E., and Brown C. F. (2001a) Microbial reduction of Fe(III) and Sorption/Precipitation of Fe(II) on Shewanella putrefaciens Strain CN32. Environmental Science & Technology 35, 1385-1393.
53. Liu C. X., Kota S., Zachara J. M., Fredrickson J. K., and Brinkman C. K. (2001b) Kinetic analysis of the bacterial reduction of goethite. Environ. Sci. Technol. 35(12), 2482-2490.
54. Lorimer G. H., Badger M. R., and Andrews T. J. (1976) The activation of ribulose-1,5-bisphosphate carboxylase by carbon dioxide and magnesium ions. Equilibria, kinetics, a suggested mechanism, and physiological implications. Biochemistry 15, 529-535.
55. Lovley D. and Woodward J. C. (1996) Mechanisms for chelator stimulation of microbial Fe(III)-oxide reduction. Chemical Geology 132, 19-24.
56. Lovley D. R. (2000) Fe(III) and Mn(IV) Reduction. In Environmental Microbe-Metal Interactions (ed. D. R. Lovley), pp. 3-30. ASM Press.
57. Ludwig C., Casey W. H., and Rock P. A. (1995) Prediction of ligand-promoted dissolution rates from the reactivities of aqueous complexes. Nature 375, 44-47.
58. Myers C. R. and Myers J. M. (1993) Ferric reductase is associated with the membranes of anaerobically grown Shewanella putrefaciens MR-1. FEMS Microbiol. Lett. 108(1), 15-22.
59. Nevin K. P. and Lovley D. R. (2000) Lack of production of electron-shuttling compounds or solubilization of Fe(III) during reduction of insoluble Fe(III) oxide by Geobacter metallireducens. Applied and Environmental Microbiology 66(5), 2248-2251.
60. Nevin K. P. and Lovley D. R. (2002) Mechanisms for Fe(III) oxide reduction in sedimentary environments. Geomicrobiology Journal 19(2), 141-159.
61. Nowack B. and Sigg L. (1997) Dissolution of Fe(III)(hydr)oxides by metal-EDTA complexes. Geochimica Cosmochimica Acta 61(5), 951-963.
62. Oelkers E. H. and Schott J. (1998) Does organic acid adsorption affect alkalifeldspar dissolution rates? Chemical Geology 151(1-4), 235-245.
63. Posey-Dowty J., Crerar D., Hellmann R., and Chang C. D. (1986) Kinetics of mineral-water reactions; theory, design and application of circulating hydrothermal equipment. American Mineralogist 71, 85-94.
64. Reyes I. and Torrent J. (1997) Citrate-ascorbate as a highly selective extractant for poorly crystalline iron oxides. Soil Science Society of America Journal 61(6), 1647-1654.
65. Rimstidt J. D. and Dove P. M. (1986) Mineral solution reaction rates in a mixed flow reactor: wollastonite hydrolysis. Geochimica et Cosmochimica Acta 50(11), 2509-2516.
66. Rittmann B. E. and McCarty P. L. (2001) Environmental Biotechnology: Principles and Applications. McGraw-Hill.
67. Robert M. and Berthelin J. (1986) Role of biological and biochemical factors in soil mineral weathering. In Interactions of Soil Minerals with Natural Organics and Microbes (ed. P. M. Huang and M. Schnitzer), pp. 453-495. Soil Science Society of America.
68. Roden E. E. (2003) Fe(III) oxide reactivity toward biological versus chemical reduction. Environ. Sci. Technol. 37, 1319-1324.
69. Roden E. E. and Zachara J. M. (1996) Microbial reduction of crystalline iron(III) oxides: Influence of oxide surface area and potential for cell growth. Environmental Science & Technology 30(5), 1618-1628.
70. Royer R. A., Burgos W. D., Fisher A. S., Jeon B. H., Unz R. F., and Dempsey B. A. (2002) Enhancement of hematite bioreduction by natural organic matter. Environmental Science & Technology 36(13), 2897-2904.
71. Ruebush S. S., Icopini G., Brantley S. L., and Tien M. (2006) In vitro enzymatic mineral oxide reduction by membrane fractions from Shewanella oneidensis MR-1. Geochimica Cosmochimica Acta 70, 56-70.
72. Rustad J. R., Felmy A. R., and Hay B. P. (1996) Molecular statics calculations for iron oxide and oxyhydroxide minerals: Toward a flexible model of the reactive mineral-water interface. Geochimica Et Cosmochimica Acta 60(9), 1553-1562.
73. Shiraki R. and Brantley S. L. (1995) Kinetics of near-equilibrium calcite precipitation at 100°C: An evaluation of elementary reaction-based and affinity-based rate laws. Geochimica et Cosmochimica Acta 59(8), 1457-1471.
74. Sposito G. (1989) The Chemistry of Soils. Oxford University Press.
75. Stillings L., Drever J. I., and Poulson S. R. (1998) Oxalate adsorption at a plagioclase (An(47)) surface and models for ligand-promoted dissolution. Environmental Science & Technology 32, 2856-2864.
76. Suter D., Banwart S., and Stumm W. (1991) Dissolution of hydrous iron(Iii) oxides by reductive mechanisms. Langmuir 7(4), 809-813.
77. Suter D., Siffert C., Sulzberger B., and Stumm W. (1988) Catalytic dissolution of iron(III)(hydr)oxides by oxalic-acid in the presence of Fe(Ii). Naturwissenschaften 75(11), 571-573.
78. Tien M. and Kirk T. K. (1983) Lignin-degrading enzyme from the Hymenomycete Phanerochaete chrysosporium Burds. Science 221, 661-663.
79. Urrutia M. M., Roden E. E., Fredrickson J. K., and Zachara J. (1998) Microbial and surfce chemistry controls on reduction of synthetic Fe(III) oxide minerals by the dissimilatory iron-reducing bacterium Shewanella alga. Geomicrobiology 15, 269-291.
80. Urrutia M. M., Roden E. E., and Zachara J. (1999) Influence of aqueous and solid-phase Fe(II) complexants on microbial reduction of crystalline iron(III) oxides. Environmental Science & Technology 33(22), 4022-4028.
81. van Grinsven J. J. M. and van Riemsdijk W. H. (1992) Evaluation of batch and column techniques to measure weathering rates in soils. Geoderma 52, 41-57.
82. Wackett L. P., Orme-Johnson W. H., and Walsh C. T. (1989) Transition metal enzymes in bacterial metabolism. In Metal Ions and Bacteria (ed. T. J. Beveridge and R. J. Doyle), pp. 165-206. J. Wiley and Sons, Inc.
83. Waite T. D., Davis J. A., Payne T. E., Waychunas G. A., and Xu N. (1994) Uranium(Vi) adsorption to ferrihydrite - Application of a surface complexation model. Geochimica Et Cosmochimica Acta 58(24), 5465-5478.
84. Welch S. A. and Ullman W. J. (1996) Feldspar dissolution in acidic and organic solutions: Compositional and pH dependence of dissolution rate. Geochimica Cosmochimica Acta 60, 2939-2948.
85. White A. F. and Brantley S. L. (2003) The effect of time on the weathering of silicate minerals: why do weathering rates differ in the laboratory and field? Chemical Geology 202, 479-506.
86. Wieland E. and Stumm W. (1992) Dissolution kinetics of kaolinite in acidic aqueous solutions at 25°C. Geochimica et Cosmochimica Acta 56(9), 3339-3355.
87. Wieland E., Wehrli B., and Stumm W. (1988) The coordination chemistry of weathering: III. A generalization in the dissolution rates of minerals. Geochimica et Cosmochimica Acta 52(8), 1969-1981.
88. 2, and organic acids. Geochimica et Cosmochimica Acta 55(4), 943-954.
89. 3+ oxides in single phase suspensions and subsurface materials. Am. Miner. 83(11-12), 1426-1443.
90. Zinder B., Furrer G., and Stumm W. (1986) The coordination chemistry of weathering: II. Dissolution of Fe(III) oxides. Geochimica et Cosmochimica Acta 50(9), 1861-1869.