-
2
-
-
0036308302
-
Fluorescent nucleotide base analogs as probes of nucleic acid structure, dynamics and interactions
-
Rist, M.J. & Marino, J.P. Fluorescent nucleotide base analogs as probes of nucleic acid structure, dynamics and interactions. Curr. Org. Chem. 6, 775-793 (2002).
-
(2002)
Curr. Org. Chem
, vol.6
, pp. 775-793
-
-
Rist, M.J.1
Marino, J.P.2
-
3
-
-
0025845771
-
Dynamics of mismatched base pairs in DNA
-
Guest, C.R., Hochstrasser, R.A., Sowers, L.C. & Millar, D.P. Dynamics of mismatched base pairs in DNA. Biochemistry 30, 3271-3279 (1991).
-
(1991)
Biochemistry
, vol.30
, pp. 3271-3279
-
-
Guest, C.R.1
Hochstrasser, R.A.2
Sowers, L.C.3
Millar, D.P.4
-
4
-
-
0028143392
-
Melting of a DNA helix terminus within the active site of a DNA polymerase
-
Hochstrasser, R.A., Carver, T.E., Sowers, L.C. & Millar, D.P. Melting of a DNA helix terminus within the active site of a DNA polymerase. Biochemistry 33, 11971-11979 (1994).
-
(1994)
Biochemistry
, vol.33
, pp. 11971-11979
-
-
Hochstrasser, R.A.1
Carver, T.E.2
Sowers, L.C.3
Millar, D.P.4
-
5
-
-
0025664982
-
Structural dynamics of DNA sensed by fluorescence from chemically-modified bases
-
Nordlund, T.M. et al. Structural dynamics of DNA sensed by fluorescence from chemically-modified bases. SPIE Time-Resolved Laser Spectroscopy in Biochemistry II 1204, 344-353 (1990).
-
(1990)
SPIE Time-Resolved Laser Spectroscopy in Biochemistry II
, vol.1204
, pp. 344-353
-
-
Nordlund, T.M.1
-
6
-
-
0028224662
-
A fluorescence-based assay for monitoring helicase activity
-
Raney, K.D., Sowers, L.C., Millar, D.P. & Benkovic, S.J. A fluorescence-based assay for monitoring helicase activity. Proc. Natl. Acad. Sci. USA 91, 6644-6648 (1994).
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 6644-6648
-
-
Raney, K.D.1
Sowers, L.C.2
Millar, D.P.3
Benkovic, S.J.4
-
7
-
-
24944436333
-
Fluorescent properties of DNA base analogue tC upon incorporation into DNA - negligible influence of neighbouring bases on fluorescence quantum yield
-
Sandin, P. et al. Fluorescent properties of DNA base analogue tC upon incorporation into DNA - negligible influence of neighbouring bases on fluorescence quantum yield. Nucleic Acids Res. 33, 5019-5025 (2005).
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 5019-5025
-
-
Sandin, P.1
-
8
-
-
1242338125
-
Pyrrolo-dC and pyrrolo-C: Fluorescent analogs of cytidine and 2′-deoxycytidine for the study of oligonucleotides
-
Berry, D.A. et al. Pyrrolo-dC and pyrrolo-C: Fluorescent analogs of cytidine and 2′-deoxycytidine for the study of oligonucleotides. Tetrahedron Lett. 45(11), 2457-2461 (2004).
-
(2004)
Tetrahedron Lett
, vol.45
, Issue.11
, pp. 2457-2461
-
-
Berry, D.A.1
-
9
-
-
33645912348
-
Examination of the premelting transition of DNA A-tracts using a fluorescent adenosine analogue
-
Augustyn, K.E., Wojtuszewski, K., Hawkins, M.E., Knutson, J.R. & Mukerji, I. Examination of the premelting transition of DNA A-tracts using a fluorescent adenosine analogue. Biochemistry 45, 5039-5047 (2006).
-
(2006)
Biochemistry
, vol.45
, pp. 5039-5047
-
-
Augustyn, K.E.1
Wojtuszewski, K.2
Hawkins, M.E.3
Knutson, J.R.4
Mukerji, I.5
-
10
-
-
0032516443
-
2+ binding properties of bacteriophage T4 DNA polymerase
-
2+ binding properties of bacteriophage T4 DNA polymerase. Biochemistry 37, 10144-10155 (1998).
-
(1998)
Biochemistry
, vol.37
, pp. 10144-10155
-
-
Beecham, J.M.1
-
11
-
-
0027493457
-
Influence of 5′-nearest neighbors on the insertion kinetics of the fluorescent nucleotide analog 2-aminopurine by Klenow fragment
-
Bloom, L.B., Otto, M.R., Beechem, J.M. & Goodman, M.F. Influence of 5′-nearest neighbors on the insertion kinetics of the fluorescent nucleotide analog 2-aminopurine by Klenow fragment. Biochemistry 32, 11247-11258 (1993).
-
(1993)
Biochemistry
, vol.32
, pp. 11247-11258
-
-
Bloom, L.B.1
Otto, M.R.2
Beechem, J.M.3
Goodman, M.F.4
-
12
-
-
0029085240
-
The nucleotide analog 2-aminopurine as a spectroscopic probe of nucleotide incorporation by the Klenow fragment of Escherichia coli polymerase I and bacteriophage T4 DNA polymerase
-
Frey, M.W., Sowers, L.C., Millar, D.P. & Benkovic, S.J. The nucleotide analog 2-aminopurine as a spectroscopic probe of nucleotide incorporation by the Klenow fragment of Escherichia coli polymerase I and bacteriophage T4 DNA polymerase. Biochemistry 34, 9185-9192 (1995).
-
(1995)
Biochemistry
, vol.34
, pp. 9185-9192
-
-
Frey, M.W.1
Sowers, L.C.2
Millar, D.P.3
Benkovic, S.J.4
-
13
-
-
0041823551
-
Use of 2-aminopurine fluorescence to examine conformational changes during nucleotide incorporation by DNA po1ymerase I (Klenow fragment)
-
Purohit, V., Grindley, N.D. & Joyce, C.M. Use of 2-aminopurine fluorescence to examine conformational changes during nucleotide incorporation by DNA po1ymerase I (Klenow fragment). Biochemistry 42, 10200-10211 (2003).
-
(2003)
Biochemistry
, vol.42
, pp. 10200-10211
-
-
Purohit, V.1
Grindley, N.D.2
Joyce, C.M.3
-
14
-
-
7944220766
-
GalR represses galP1 by inhibiting the rate-determining open complex formation through RNA polymerase contact: A GalR negative control mutant
-
Roy, S., Semsey, S., Liu, M., Gussin, G.N. & Adhya, S. GalR represses galP1 by inhibiting the rate-determining open complex formation through RNA polymerase contact: A GalR negative control mutant. J. Mol. Biol. 344, 609-618 (2004).
-
(2004)
J. Mol. Biol
, vol.344
, pp. 609-618
-
-
Roy, S.1
Semsey, S.2
Liu, M.3
Gussin, G.N.4
Adhya, S.5
-
15
-
-
0032529485
-
2-Aminopurine fluorescence studies of base stacking interactions at abasic sites in DNA: Metal-ion and base sequence effects
-
Stivers, J.T. 2-Aminopurine fluorescence studies of base stacking interactions at abasic sites in DNA: Metal-ion and base sequence effects. Nucleic Acids Res. 26, 3837-3844 (1998).
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 3837-3844
-
-
Stivers, J.T.1
-
16
-
-
33751560231
-
Uncoupling of nucleotide flipping and DNA bending by the t4 pyrimidine dimer DNA glycosylase
-
Walker, R.K., McCullough, A.K. & Lloyd, R.S. Uncoupling of nucleotide flipping and DNA bending by the t4 pyrimidine dimer DNA glycosylase. Biochemistry 45, 14192-14200 (2006).
-
(2006)
Biochemistry
, vol.45
, pp. 14192-14200
-
-
Walker, R.K.1
McCullough, A.K.2
Lloyd, R.S.3
-
17
-
-
33644858313
-
Formation of the G-quadruplex and i-motif structures in retinoblastoma susceptibility genes (Rb)
-
Xu, Y. & Sugiyama, H. Formation of the G-quadruplex and i-motif structures in retinoblastoma susceptibility genes (Rb). Nucleic Acids Res. 34, 949-954 (2005).
-
(2005)
Nucleic Acids Res
, vol.34
, pp. 949-954
-
-
Xu, Y.1
Sugiyama, H.2
-
18
-
-
33751016032
-
Fluorescent DNA base replacements: Reporters and sensors for biological systems
-
Wilson, J.N. & Kool, E.T. Fluorescent DNA base replacements: Reporters and sensors for biological systems. Org. Biomol. Chem. 4, 4265-4274 (2006).
-
(2006)
Org. Biomol. Chem
, vol.4
, pp. 4265-4274
-
-
Wilson, J.N.1
Kool, E.T.2
-
19
-
-
24144445103
-
Synthesis, characterisation and theoretical calculations of 2,6-diaminopurine etheno derivatives
-
Virta, P. et al. Synthesis, characterisation and theoretical calculations of 2,6-diaminopurine etheno derivatives. Org. Biomol. Chem. 3, 2924-2929 (2005).
-
(2005)
Org. Biomol. Chem
, vol.3
, pp. 2924-2929
-
-
Virta, P.1
-
20
-
-
0031023096
-
Fluorescence properties of pteridine nucleoside analogs as monomers and incorporated into oligonucleotides
-
Hawkins, M.E., Pfleiderer, W., Balis, F.M., Porter, D. & Knutson, J.R. Fluorescence properties of pteridine nucleoside analogs as monomers and incorporated into oligonucleotides. Anal. Biochem. 244, 86-95 (1997).
-
(1997)
Anal. Biochem
, vol.244
, pp. 86-95
-
-
Hawkins, M.E.1
Pfleiderer, W.2
Balis, F.M.3
Porter, D.4
Knutson, J.R.5
-
21
-
-
0029118594
-
Incorporation of a fluorescent guanosine analog into oligonucleotides and its application to a real time assay for the HIV-1 integrase 3′-processing reaction
-
Hawkins, M.E., Pfleiderer, W., Mazumder, A., Pommier, Y.G. & Balis, F.M. Incorporation of a fluorescent guanosine analog into oligonucleotides and its application to a real time assay for the HIV-1 integrase 3′-processing reaction. Nucleic Acids Res. 23, 2872-2880 (1995).
-
(1995)
Nucleic Acids Res
, vol.23
, pp. 2872-2880
-
-
Hawkins, M.E.1
Pfleiderer, W.2
Mazumder, A.3
Pommier, Y.G.4
Balis, F.M.5
-
22
-
-
33847073417
-
Structural confirmation of a bent and open model for the initiation complex of T7 RNA polymerase
-
Turingan, R.S., Liu, C., Hawkins, M.E. & Martin, C.T. Structural confirmation of a bent and open model for the initiation complex of T7 RNA polymerase. Biochemistry 46(7), 1714-1723 (2007).
-
(2007)
Biochemistry
, vol.46
, Issue.7
, pp. 1714-1723
-
-
Turingan, R.S.1
Liu, C.2
Hawkins, M.E.3
Martin, C.T.4
-
23
-
-
0035957055
-
HU binding to DNA: Evidence for multiple complex formation and DNA bending
-
Wojtuszewski, K., Hawkins, M., Cole, J.L. & Mukerji, I. HU binding to DNA: Evidence for multiple complex formation and DNA bending. Biochemistry 40, 2588-2598 (2001).
-
(2001)
Biochemistry
, vol.40
, pp. 2588-2598
-
-
Wojtuszewski, K.1
Hawkins, M.2
Cole, J.L.3
Mukerji, I.4
-
24
-
-
0142242183
-
Structure-based incorporation of 6-methyl- 8-(2-deoxy-beta-fibofuranosyl)isoxanthopteridine into the human telomeric repeat DNA as a probe for UP1 binding and destabilization of G-tetrad structures
-
Myers, J.C., Moore, S.A. & Shamoo, Y. Structure-based incorporation of 6-methyl- 8-(2-deoxy-beta-fibofuranosyl)isoxanthopteridine into the human telomeric repeat DNA as a probe for UP1 binding and destabilization of G-tetrad structures. J. Biol. Chem. 278, 42300-42306 (2003).
-
(2003)
J. Biol. Chem
, vol.278
, pp. 42300-42306
-
-
Myers, J.C.1
Moore, S.A.2
Shamoo, Y.3
-
26
-
-
0035892607
-
Synthesis and fluorescence characterization of pteridine adenosine nucleoside analogs for DNA incorporation
-
Hawkins, M.E., Pfleiderer, W., Jungmann, O. & Balis, F.M. Synthesis and fluorescence characterization of pteridine adenosine nucleoside analogs for DNA incorporation. Anal. Biochem. 298, 231-240 (2001).
-
(2001)
Anal. Biochem
, vol.298
, pp. 231-240
-
-
Hawkins, M.E.1
Pfleiderer, W.2
Jungmann, O.3
Balis, F.M.4
-
27
-
-
6344223571
-
On the feasibility of single-molecule detection of the guanosine-analogue 3-MI
-
Sanabia, J.E., Goldner, L.S., Lacaze, P.A. & Hawkins, M.E. On the feasibility of single-molecule detection of the guanosine-analogue 3-MI. J. Phys. Chem. B 108, 15293-15300 (2004).
-
(2004)
J. Phys. Chem. B
, vol.108
, pp. 15293-15300
-
-
Sanabia, J.E.1
Goldner, L.S.2
Lacaze, P.A.3
Hawkins, M.E.4
-
28
-
-
14844361996
-
The two-photon excitation cross section of 6MAP, a fluorescent adenine analogue
-
Stanley, R.J., Hou, Z., Yang, A. & Hawkins, M.E. The two-photon excitation cross section of 6MAP, a fluorescent adenine analogue. J. Phys. Chem. B 109, 3690-3695 (2005).
-
(2005)
J. Phys. Chem. B
, vol.109
, pp. 3690-3695
-
-
Stanley, R.J.1
Hou, Z.2
Yang, A.3
Hawkins, M.E.4
-
29
-
-
0346850027
-
Direct evaluation of a mechanism for activation of the RecA nucleoprotein filament
-
Roca, A.I. & Singleton, S.F. Direct evaluation of a mechanism for activation of the RecA nucleoprotein filament. J. Am. Chem. Soc. 125, 15366-15375 (2003).
-
(2003)
J. Am. Chem. Soc
, vol.125
, pp. 15366-15375
-
-
Roca, A.I.1
Singleton, S.F.2
|