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Volumn 39, Issue 8, 2007, Pages 1956-1967

An empirical approach to target DNA quantification in environmental samples using real-time polymerase chain reactions

Author keywords

Critical threshold; DNA quantification; Genetically modified; Multiple regression; Non linear regression; Polymerase chain reaction; Quantitative PCR; Real time PCR; SAS; Soil DNA

Indexed keywords

CONCENTRATION (PROCESS); CORRELATION METHODS; ENZYME KINETICS; REACTION KINETICS; REGRESSION ANALYSIS; SOILS;

EID: 34248547335     PISSN: 00380717     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.soilbio.2007.02.014     Document Type: Article
Times cited : (6)

References (32)
  • 3
    • 34248536772 scopus 로고    scopus 로고
    • Barry, G.F., Kishore, G.M., Padgette, S.R., Stallings, W.C., 1997. Glyphosate-tolerant 5-enolpyruvylshikimate-3-phospate synthases. US Patent 5,627,060.
  • 4
    • 3542995148 scopus 로고    scopus 로고
    • Quantitative isolation of microbial DNA from different types of soils of natural and agricultural ecosystems
    • Blagodatskaya E.V., Blagodatskii S.A., and Anderson T.H. Quantitative isolation of microbial DNA from different types of soils of natural and agricultural ecosystems. Microbiology 72 (2003) 744-749
    • (2003) Microbiology , vol.72 , pp. 744-749
    • Blagodatskaya, E.V.1    Blagodatskii, S.A.2    Anderson, T.H.3
  • 6
    • 0002594984 scopus 로고
    • A rapid DNA isolation procedure for small quantities of fresh leaf tissue
    • Doyle J.J., and Doyle J.L. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemistry Bulletin 19 (1987) 11-15
    • (1987) Phytochemistry Bulletin , vol.19 , pp. 11-15
    • Doyle, J.J.1    Doyle, J.L.2
  • 7
    • 11344254823 scopus 로고    scopus 로고
    • Tracing residual recombinant feed molecules during digestions and rumen bacterial diversity in cattle fed transgene maize
    • Einspanier R., Lutz B., Rief S., Berezina O., Zverlov V., Schwarz W., and Mayer J. Tracing residual recombinant feed molecules during digestions and rumen bacterial diversity in cattle fed transgene maize. European Food Research & Technology 218 (2004) 269-273
    • (2004) European Food Research & Technology , vol.218 , pp. 269-273
    • Einspanier, R.1    Lutz, B.2    Rief, S.3    Berezina, O.4    Zverlov, V.5    Schwarz, W.6    Mayer, J.7
  • 8
    • 0031239471 scopus 로고    scopus 로고
    • Persistence of Pseudomonas aureofaciens strains and DNA in soil
    • England L.S., Lee H., and Trevors J.T. Persistence of Pseudomonas aureofaciens strains and DNA in soil. Soil Biology & Biochemistry 29 (1997) 1521-1527
    • (1997) Soil Biology & Biochemistry , vol.29 , pp. 1521-1527
    • England, L.S.1    Lee, H.2    Trevors, J.T.3
  • 9
    • 0032894224 scopus 로고    scopus 로고
    • Quantitative rt-PCR: Pitfalls and potential
    • Freeman W.M., Walker S.J., and Vrana K.E. Quantitative rt-PCR: Pitfalls and potential. Biotechniques 26 (1999) 112-125
    • (1999) Biotechniques , vol.26 , pp. 112-125
    • Freeman, W.M.1    Walker, S.J.2    Vrana, K.E.3
  • 11
    • 21344471138 scopus 로고    scopus 로고
    • Real-time RT-PCR normalization: strategies and considerations
    • Huggett J., Dheda K., Bustin S., and Zumla A. Real-time RT-PCR normalization: strategies and considerations. Genes and Immunity 6 (2005) 279-284
    • (2005) Genes and Immunity , vol.6 , pp. 279-284
    • Huggett, J.1    Dheda, K.2    Bustin, S.3    Zumla, A.4
  • 12
    • 0027312833 scopus 로고
    • Comparison of the Gompertz and Weibull functions as descriptors for human mortality distributions and their intersections
    • Juckett D.A., and Rosenberg B. Comparison of the Gompertz and Weibull functions as descriptors for human mortality distributions and their intersections. Mechanisms of Ageing & Development 69 (1993) 1-31
    • (1993) Mechanisms of Ageing & Development , vol.69 , pp. 1-31
    • Juckett, D.A.1    Rosenberg, B.2
  • 14
    • 25444475785 scopus 로고    scopus 로고
    • A standard curve based method for relative real time PCR data processing
    • Larionov A., Krause A., and Miller W. A standard curve based method for relative real time PCR data processing. BMC Bioinformatics 6 62 (2005)
    • (2005) BMC Bioinformatics , vol.6 , Issue.62
    • Larionov, A.1    Krause, A.2    Miller, W.3
  • 16
    • 0037096955 scopus 로고    scopus 로고
    • A new quantitative method of real time reverse transcription polymerase chain reaction assay based on simulation of polymerase chain reaction kinetics
    • Liu W.H., and Saint D.A. A new quantitative method of real time reverse transcription polymerase chain reaction assay based on simulation of polymerase chain reaction kinetics. Annals of Biochemistry 305 (2002) 291
    • (2002) Annals of Biochemistry , vol.305 , pp. 291
    • Liu, W.H.1    Saint, D.A.2
  • 18
    • 85072418837 scopus 로고    scopus 로고
    • A review of Weibull distributions and selected engineering applications
    • Luko S. A review of Weibull distributions and selected engineering applications. SAE Transactions 108 (1999) 398-412
    • (1999) SAE Transactions , vol.108 , pp. 398-412
    • Luko, S.1
  • 19
    • 1842289769 scopus 로고    scopus 로고
    • Quantification of genetically tagged cyanobacteria in Baltic Sea sediment by competitive
    • Möller A., and Jansson J.K. Quantification of genetically tagged cyanobacteria in Baltic Sea sediment by competitive. PCR Biotechniques 22 (1997) 512-518
    • (1997) PCR Biotechniques , vol.22 , pp. 512-518
    • Möller, A.1    Jansson, J.K.2
  • 20
    • 1842509857 scopus 로고    scopus 로고
    • Convenient determination of DNA extraction efficiency using an external DNA recovery standard and quantitative-competitive PCR
    • Mumy K.L., and Findlay R.H. Convenient determination of DNA extraction efficiency using an external DNA recovery standard and quantitative-competitive PCR. Journal of Microbiological Methods 57 (2004) 259-268
    • (2004) Journal of Microbiological Methods , vol.57 , pp. 259-268
    • Mumy, K.L.1    Findlay, R.H.2
  • 21
    • 17244381207 scopus 로고    scopus 로고
    • Normalization of soil DNA extraction for accurate quantification real-time PCR and of target genes by DGGE
    • Park J.W., and Crowley D.E. Normalization of soil DNA extraction for accurate quantification real-time PCR and of target genes by DGGE. Biotechniques 38 (2005) 579-586
    • (2005) Biotechniques , vol.38 , pp. 579-586
    • Park, J.W.1    Crowley, D.E.2
  • 22
    • 0242317675 scopus 로고    scopus 로고
    • Experimental validation of novel and conventional approaches to quantitative real-time PCR data analysis
    • Peirson S.N., Butler J.N., and Foster R.G. Experimental validation of novel and conventional approaches to quantitative real-time PCR data analysis. Nucleic Acids Research 31 (2003) e73
    • (2003) Nucleic Acids Research , vol.31
    • Peirson, S.N.1    Butler, J.N.2    Foster, R.G.3
  • 23
    • 17344392308 scopus 로고    scopus 로고
    • A new mathematical model for relative quantification in real-time RT-PCR
    • Pfaffl M.W. A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Research 29 (2001) e45
    • (2001) Nucleic Acids Research , vol.29
    • Pfaffl, M.W.1
  • 24
  • 25
    • 0037435395 scopus 로고    scopus 로고
    • Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR) data
    • Ramakers C., Ruijter J.M., Deprez R.H.L., and Moorman A.F.M. Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR) data. Neuroscience Letters 339 (2003) 62-66
    • (2003) Neuroscience Letters , vol.339 , pp. 62-66
    • Ramakers, C.1    Ruijter, J.M.2    Deprez, R.H.L.3    Moorman, A.F.M.4
  • 26
    • 16544384956 scopus 로고    scopus 로고
    • Sigmoidal curve-fitting redefines quantitative real-time PCR with the prospective of developing automated high-throughput applications
    • Rutledge R.G. Sigmoidal curve-fitting redefines quantitative real-time PCR with the prospective of developing automated high-throughput applications. Nucleic Acids Research 32 (2004) e178
    • (2004) Nucleic Acids Research , vol.32
    • Rutledge, R.G.1
  • 27
    • 4444337502 scopus 로고    scopus 로고
    • Mathematics of quantitative kinetic PCR and the application of standard curves
    • Rutledge R.G., and Côté C. Mathematics of quantitative kinetic PCR and the application of standard curves. Nucleic Acids Research 31 (2003) e93
    • (2003) Nucleic Acids Research , vol.31
    • Rutledge, R.G.1    Côté, C.2
  • 29
    • 1542356381 scopus 로고    scopus 로고
    • Standardized determination of real-time PCR efficiency from a single reaction set-up
    • Tichopad A., Dilger M., Schwarz G., and Pfaffl M.W. Standardized determination of real-time PCR efficiency from a single reaction set-up. Nucleic Acids Research 31 (2003) e122
    • (2003) Nucleic Acids Research , vol.31
    • Tichopad, A.1    Dilger, M.2    Schwarz, G.3    Pfaffl, M.W.4
  • 30
    • 34248519709 scopus 로고    scopus 로고
    • A method for quantification of absolute amounts of nucleic acids by (RT)-PCR and a new mathematical model for data analysis
    • Vu H.L., Troubetzkoy S., Nguyen H.H., Russell M.W., and Mestecky J. A method for quantification of absolute amounts of nucleic acids by (RT)-PCR and a new mathematical model for data analysis. FASEB Journal 14 Supplement S (2000) A1234
    • (2000) FASEB Journal , vol.14 , Issue.SUPPL. S
    • Vu, H.L.1    Troubetzkoy, S.2    Nguyen, H.H.3    Russell, M.W.4    Mestecky, J.5
  • 31
    • 0035822557 scopus 로고    scopus 로고
    • Quantification of the carbazole 1,9a-dioxygenase gene by real-time competitive PCR combined with co-extraction of standards
    • Widada J., Nojiri H., Kasuga K., Yoshida T., Habe H., and Omori T. Quantification of the carbazole 1,9a-dioxygenase gene by real-time competitive PCR combined with co-extraction of standards. FEMS Microbiology Letters 202 (2001) 51-57
    • (2001) FEMS Microbiology Letters , vol.202 , pp. 51-57
    • Widada, J.1    Nojiri, H.2    Kasuga, K.3    Yoshida, T.4    Habe, H.5    Omori, T.6
  • 32
    • 0030748867 scopus 로고    scopus 로고
    • Inhibition and facilitation of nucleic acid amplification
    • Wilson I.G. Inhibition and facilitation of nucleic acid amplification. Applied & Environmental Microbiology 63 (1997) 3741-3751
    • (1997) Applied & Environmental Microbiology , vol.63 , pp. 3741-3751
    • Wilson, I.G.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.