-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S., T. Madden, A. Schaffer, J. H. Zhang, Z. Zhang, W. Miller, and D. Lipman. 1997. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res. 25: 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.1
Madden, T.2
Schaffer, A.3
Zhang, J.H.4
Zhang, Z.5
Miller, W.6
Lipman, D.7
-
2
-
-
0023497170
-
Natural attenuation of aromatic hydrocarbons in a shallow sand aquifer
-
Barker, J. F., G. C. Patrick, and D. Major. 1987. Natural attenuation of aromatic hydrocarbons in a shallow sand aquifer. Ground Water Monit. Rev. 7: 64-71.
-
(1987)
Ground Water Monit. Rev
, vol.7
, pp. 64-71
-
-
Barker, J.F.1
Patrick, G.C.2
Major, D.3
-
3
-
-
26844559602
-
Phylum-and class-specific PCR primers for general microbial community analysis
-
Blackwood, C. B., A. Oaks, and J. S. Buyer. 2005. Phylum-and class-specific PCR primers for general microbial community analysis. Appl. Environ. Microbiol. 71: 6193-6198.
-
(2005)
Appl. Environ. Microbiol
, vol.71
, pp. 6193-6198
-
-
Blackwood, C.B.1
Oaks, A.2
Buyer, J.S.3
-
4
-
-
27944450399
-
Bacterial communities of biofilms sampled from seepage groundwater contaminated with petroleum oil
-
Cho, W. S., E.-H. Lee, E.-H. Shim, J. S. Kim, H. W. Ryu, and K.-S Cho. 2005. Bacterial communities of biofilms sampled from seepage groundwater contaminated with petroleum oil. J. Microbiol. Biotechnol. 15: 952-964.
-
(2005)
J. Microbiol. Biotechnol
, vol.15
, pp. 952-964
-
-
Cho, W.S.1
Lee, E.-H.2
Shim, E.-H.3
Kim, J.S.4
Ryu, H.W.5
Cho, K.-S.6
-
5
-
-
1242338003
-
Influence of petroleum contamination and biostimulation treatment on the diversity of Pseudomonas spp. in soil microcosms as evaluated by 16S rRNA-based PCR and DGGE
-
Evans, F. F., L. Seldin, G. V. Sebastian, S. Kjelleberg, C. Holmstrom, and A. S. Rosado. 2004. Influence of petroleum contamination and biostimulation treatment on the diversity of Pseudomonas spp. in soil microcosms as evaluated by 16S rRNA-based PCR and DGGE. Lett. Appl. Microbiol. 38: 93-98.
-
(2004)
Lett. Appl. Microbiol
, vol.38
, pp. 93-98
-
-
Evans, F.F.1
Seldin, L.2
Sebastian, G.V.3
Kjelleberg, S.4
Holmstrom, C.5
Rosado, A.S.6
-
6
-
-
27844604206
-
Conserved indels in protein sequences that are characteristic of the phylum Actinobacteria
-
Gao, B. and S. Gupta. 2005. Conserved indels in protein sequences that are characteristic of the phylum Actinobacteria. Int. J. Syst. Evol. Microbiol. 55: 2401-2412.
-
(2005)
Int. J. Syst. Evol. Microbiol
, vol.55
, pp. 2401-2412
-
-
Gao, B.1
Gupta, S.2
-
7
-
-
0025366454
-
Genetic diversity in Sargasso Sea bacterioplankton
-
Giovannoni, S. J., T. B. Britschgi, C. L. Moyer, and K. G. Field. 1990. Genetic diversity in Sargasso Sea bacterioplankton. Nature 345: 60-63.
-
(1990)
Nature
, vol.345
, pp. 60-63
-
-
Giovannoni, S.J.1
Britschgi, T.B.2
Moyer, C.L.3
Field, K.G.4
-
8
-
-
0034469732
-
Composition of soil microbial communities enriched on a mixture of aromatic hydrocarbons
-
Greene, E. A., J. G. Kay, K. Jaber, L. G Stehmeirer, and G. Voordouw. 2000. Composition of soil microbial communities enriched on a mixture of aromatic hydrocarbons. Appl. Environ. Microbiol. 66: 5282-5289.
-
(2000)
Appl. Environ. Microbiol
, vol.66
, pp. 5282-5289
-
-
Greene, E.A.1
Kay, J.G.2
Jaber, K.3
Stehmeirer, L.G.4
Voordouw, G.5
-
9
-
-
0032708727
-
Linking toluene degradation with specific microbial populations in soil
-
Hanson, J. R., J. L. Macalady, D. Harris, and K. M. Scow. 1999. Linking toluene degradation with specific microbial populations in soil. Appl. Environ. Microbiol. 65: 5403-5408.
-
(1999)
Appl. Environ. Microbiol
, vol.65
, pp. 5403-5408
-
-
Hanson, J.R.1
Macalady, J.L.2
Harris, D.3
Scow, K.M.4
-
10
-
-
0031982528
-
Microbial evolution, diversity, and ecology: A decade of ribosomal RNA analysis of uncultivated micro-organisms
-
Head, I. M., J. R. Sauders, and R. W Pickup. 1998. Microbial evolution, diversity, and ecology: A decade of ribosomal RNA analysis of uncultivated micro-organisms. Microb. Ecol. 35: 1-21.
-
(1998)
Microb. Ecol
, vol.35
, pp. 1-21
-
-
Head, I.M.1
Sauders, J.R.2
Pickup, R.W.3
-
11
-
-
33644932403
-
PCR-DGGE method to assess the diversity of BTEX monooxygenase genes at contaminated sites
-
Hendrickx, B., W. Dejonghe, F. Faber, W. Boenne, L. Bastiaens, W. Verstraete, E. M. Top, and D. Springael. 2006. PCR-DGGE method to assess the diversity of BTEX monooxygenase genes at contaminated sites. FEMS Microbiol. Ecol. 55: 262-273.
-
(2006)
FEMS Microbiol. Ecol
, vol.55
, pp. 262-273
-
-
Hendrickx, B.1
Dejonghe, W.2
Faber, F.3
Boenne, W.4
Bastiaens, L.5
Verstraete, W.6
Top, E.M.7
Springael, D.8
-
12
-
-
0002912874
-
Application of denaturing gradient gel electrophoresis (DGGE) and temperatrue gradient gel electrophoresis (TGGE) for studying soil microbial communities
-
J. D. van Elsas, E. M. H. Wellington, and J. T. Trevors eds, Marcel Dekker, Inc, New York, N.Y
-
Heuer, H. and K. Smalla. 1997. Application of denaturing gradient gel electrophoresis (DGGE) and temperatrue gradient gel electrophoresis (TGGE) for studying soil microbial communities, pp. 353-373. In J. D. van Elsas, E. M. H. Wellington, and J. T. Trevors (eds.), Modern Soil Microbiology. Marcel Dekker, Inc., New York, N.Y.
-
(1997)
Modern Soil Microbiology
, pp. 353-373
-
-
Heuer, H.1
Smalla, K.2
-
13
-
-
0031662188
-
Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity
-
Hugenholtz, P., B. M. Goebel, and N. R. Pace. 1998. Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity. J. Bacteriol. 180: 6793-6774.
-
(1998)
J. Bacteriol
, vol.180
, pp. 6793-6774
-
-
Hugenholtz, P.1
Goebel, B.M.2
Pace, N.R.3
-
14
-
-
32944464987
-
Sequence-based screening for putative polyketide synthase gene-harboring clones from a soil metagenomic library
-
Ji, S. C., D. Kim, J.-H. Yoon, T.-K Oh, and C.-H. Lee. 2006. Sequence-based screening for putative polyketide synthase gene-harboring clones from a soil metagenomic library. J. Microbiol. Biotechnol. 16: 153-157.
-
(2006)
J. Microbiol. Biotechnol
, vol.16
, pp. 153-157
-
-
Ji, S.C.1
Kim, D.2
Yoon, J.-H.3
Oh, T.-K.4
Lee, C.-H.5
-
15
-
-
1142281826
-
Functional gene diversity analysis in BTEX contaminated soils by means of PCR-SSCP DNA fingerprinting: Comparative diversity assessment against bacterial isolates and PCR-DNA clone libraries
-
Junca, H. and D. H. Pieper. 2004. Functional gene diversity analysis in BTEX contaminated soils by means of PCR-SSCP DNA fingerprinting: Comparative diversity assessment against bacterial isolates and PCR-DNA clone libraries. Environ. Microbiol. 6: 95-100.
-
(2004)
Environ. Microbiol
, vol.6
, pp. 95-100
-
-
Junca, H.1
Pieper, D.H.2
-
16
-
-
27944432555
-
Molecular and cultivation-based characterization of bacterial community structure in rice field soil
-
Kim, M.-S., J.-H. Ahn, M.-K. Jung, J.-H. Yu, D. Joo, M.-C. Kim, H.-C. Shin, T. S. Kim, T.-H. Ryu, S.-J. Kweon, T. S. Kim, D.-H. Kim, and J.-O. Ka. 2005. Molecular and cultivation-based characterization of bacterial community structure in rice field soil. J. Microbiol. Biotechnol. 15: 1087-1093.
-
(2005)
J. Microbiol. Biotechnol
, vol.15
, pp. 1087-1093
-
-
Kim, M.-S.1
Ahn, J.-H.2
Jung, M.-K.3
Yu, J.-H.4
Joo, D.5
Kim, M.-C.6
Shin, H.-C.7
Kim, T.S.8
Ryu, T.-H.9
Kweon, S.-J.10
Kim, T.S.11
Kim, D.-H.12
Ka, J.-O.13
-
17
-
-
0030661563
-
Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA
-
Liu, W. T., T. L. Marsh, H. Cheng, and L. J. Forney. 1997. Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA. Appl. Environ. Microbiol. 63: 4516-4522.
-
(1997)
Appl. Environ. Microbiol
, vol.63
, pp. 4516-4522
-
-
Liu, W.T.1
Marsh, T.L.2
Cheng, H.3
Forney, L.J.4
-
19
-
-
0032772104
-
Microbial population changes during bioremediation of an experimental oil spill
-
Macnaughton, S. J., J. R. Stephen, A. D. Venosa, G A. Davis, Y.-J. Chang, and D. C. White. 1999. Microbial population changes during bioremediation of an experimental oil spill. Appl. Environ. Microbiol. 65: 3566-3574.
-
(1999)
Appl. Environ. Microbiol
, vol.65
, pp. 3566-3574
-
-
Macnaughton, S.J.1
Stephen, J.R.2
Venosa, A.D.3
Davis, G.A.4
Chang, Y.-J.5
White, D.C.6
-
20
-
-
0033954255
-
The RDP (Ribosomal Database Project) continues
-
Maidak, B. L., J. R. Cole, T. G Lilburn, C. T. Parker Jr., P. R. Saxman, J. M. Stredwick, G. M. Arrity, B. Li, G. J. Olsen, S. Pramanik, T. M. Schmidt, and J. M. Tiedje. 2000. The RDP (Ribosomal Database Project) continues. Nucleic Acids Res. 28: 173-174.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 173-174
-
-
Maidak, B.L.1
Cole, J.R.2
Lilburn, T.G.3
Parker Jr., C.T.4
Saxman, P.R.5
Stredwick, J.M.6
Arrity, G.M.7
Li, B.8
Olsen, G.J.9
Pramanik, S.10
Schmidt, T.M.11
Tiedje, J.M.12
-
21
-
-
34248366014
-
Specific oligonucleotide probes for in situ detection of a major group of Gram-positive bacteria with low DNA G+C content
-
Meier, H., R. Amann, W. Ludwig, M. Wagner, and K.-H. Schleifer. 1999. Specific oligonucleotide probes for in situ detection of a major group of Gram-positive bacteria with low DNA G+C content. Syst. Appl. Microbiol. 15: 593-600.
-
(1999)
Syst. Appl. Microbiol
, vol.15
, pp. 593-600
-
-
Meier, H.1
Amann, R.2
Ludwig, W.3
Wagner, M.4
Schleifer, K.-H.5
-
22
-
-
33344472545
-
Determination of biodegradation potential by two culture-independent methods in PAH-contaminated soils
-
Moon, H. S., H.-Y. Kahng, J. Y. Kim, J. J. Kukor, and K. Nam. 2006. Determination of biodegradation potential by two culture-independent methods in PAH-contaminated soils. Environ. Poll. 140: 536-545.
-
(2006)
Environ. Poll
, vol.140
, pp. 536-545
-
-
Moon, H.S.1
Kahng, H.-Y.2
Kim, J.Y.3
Kukor, J.J.4
Nam, K.5
-
23
-
-
0027460328
-
Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
-
Muyzer, G., E. C. de Waal, and A. G Uitterlinden. 1993. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl. Environ. Microbiol. 59: 695-700.
-
(1993)
Appl. Environ. Microbiol
, vol.59
, pp. 695-700
-
-
Muyzer, G.1
de Waal, E.C.2
Uitterlinden, A.G.3
-
24
-
-
33646758598
-
-
Quan, Z.-X., S.-K. Rhee, J.-W. Bae, J.-H. Baek, Y.-H. Park, and Sung-Taik Lee. 2006. Bacterial community structure in activated sludge reactors treating free or metal-complexed cyanides. J. Microbiol. Biotechnol. 2: 232-249.
-
Quan, Z.-X., S.-K. Rhee, J.-W. Bae, J.-H. Baek, Y.-H. Park, and Sung-Taik Lee. 2006. Bacterial community structure in activated sludge reactors treating free or metal-complexed cyanides. J. Microbiol. Biotechnol. 2: 232-249.
-
-
-
-
25
-
-
0026769090
-
Gram-positive bacteria with a high DNA G+C content are characterized by a common insertion within their 23 rDNA genes
-
Roller, C., W. Ludwig, and K. H. Schleifer. 1992. Gram-positive bacteria with a high DNA G+C content are characterized by a common insertion within their 23 rDNA genes. J. Gen. Microbiol. 138: 167-175.
-
(1992)
J. Gen. Microbiol
, vol.138
, pp. 167-175
-
-
Roller, C.1
Ludwig, W.2
Schleifer, K.H.3
-
26
-
-
0031927989
-
Genetic diversity of nifH gene sequences in Paenibacillus azotofixans strains and soil samples analyzed by denaturing gradient gel electrophoresis of PCR-amplified gene fragments
-
Rosado, A. S., G. R. Duarte, L. Seldin, and J. D. van Elsas. 1998. Genetic diversity of nifH gene sequences in Paenibacillus azotofixans strains and soil samples analyzed by denaturing gradient gel electrophoresis of PCR-amplified gene fragments. Appl. Environ. Microbiol. 64: 2770-2779.
-
(1998)
Appl. Environ. Microbiol
, vol.64
, pp. 2770-2779
-
-
Rosado, A.S.1
Duarte, G.R.2
Seldin, L.3
van Elsas, J.D.4
-
27
-
-
1542285226
-
Electrophoresis time impacts the denaturing gradient gel electrophoresis-based assessment of bacterial community structure
-
Sigler, W. V., C. Miniaci, and J. Zeyer. 2004. Electrophoresis time impacts the denaturing gradient gel electrophoresis-based assessment of bacterial community structure. J. Microbiol. Methods 57: 17-22.
-
(2004)
J. Microbiol. Methods
, vol.57
, pp. 17-22
-
-
Sigler, W.V.1
Miniaci, C.2
Zeyer, J.3
|