메뉴 건너뛰기




Volumn 3400 LNCS, Issue , 2005, Pages 134-152

Computational intelligence in bioinformatics

Author keywords

Artificial neural networks; Biological data mining; Gene expression; Genetic algorithms; Proteins; Rough sets; Soft computing

Indexed keywords

DATA MINING; FUZZY SETS; GENE EXPRESSION; GENETIC ALGORITHMS; NEURAL NETWORKS; PROTEINS; SOFT COMPUTING;

EID: 34248384657     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/11427834_6     Document Type: Article
Times cited : (15)

References (48)
  • 2
    • 36848999337 scopus 로고    scopus 로고
    • Special Issue on Bioinformatics. IEEE Computer 35 (2002)
    • Special Issue on Bioinformatics. IEEE Computer 35 (2002)
  • 6
    • 0028385414 scopus 로고
    • Fuzzy logic, neural networks, and soft computing
    • Zadeh, L.A.: Fuzzy logic, neural networks, and soft computing. Communications of the ACM 37 (1994) 77-84
    • (1994) Communications of the ACM , vol.37 , pp. 77-84
    • Zadeh, L.A.1
  • 10
    • 0023803244 scopus 로고
    • Predicting the secondary structure of globular proteins using neural network models
    • Qian, N., Sejnowski, T.: Predicting the secondary structure of globular proteins using neural network models. Journal of Molecular Biology 202 (1988) 865-884
    • (1988) Journal of Molecular Biology , vol.202 , pp. 865-884
    • Qian, N.1    Sejnowski, T.2
  • 11
    • 0027291015 scopus 로고
    • Prediction of protein secondary structure at better than 70% accuracy
    • Rost, B., Sander, C.: Prediction of protein secondary structure at better than 70% accuracy. Journal of Molecular Biology 232 (1993) 584-599
    • (1993) Journal of Molecular Biology , vol.232 , pp. 584-599
    • Rost, B.1    Sander, C.2
  • 12
    • 0029984070 scopus 로고    scopus 로고
    • Improving prediction of protein secondary structure using structured neural networks and multiple sequence alignments
    • Riis, S.K., Krogh, A.: Improving prediction of protein secondary structure using structured neural networks and multiple sequence alignments. Journal of Computational Biology 3 (1996) 163-183
    • (1996) Journal of Computational Biology , vol.3 , pp. 163-183
    • Riis, S.K.1    Krogh, A.2
  • 13
    • 0035108235 scopus 로고    scopus 로고
    • A hierarchical unsupervised growing neural network for clustering gene expression patterns
    • Herrero, J., Valencia, A., Dopazo, J.: A hierarchical unsupervised growing neural network for clustering gene expression patterns. Bioinformatics 17 (2001) 126-136
    • (2001) Bioinformatics , vol.17 , pp. 126-136
    • Herrero, J.1    Valencia, A.2    Dopazo, J.3
  • 14
    • 0141686299 scopus 로고    scopus 로고
    • Classifying gene expression data of cancer using classifier ensemble with mutually exclusive features
    • Cho, S.B., Ryu, J.: Classifying gene expression data of cancer using classifier ensemble with mutually exclusive features. Proceedings of the IEEE 90 (2002) 1744-1753
    • (2002) Proceedings of the IEEE , vol.90 , pp. 1744-1753
    • Cho, S.B.1    Ryu, J.2
  • 15
    • 0345407833 scopus 로고    scopus 로고
    • Fogel, G, Corne, D, eds, Morgan Kaufmann, San Francisco
    • Fogel, G., Corne, D., eds.: Evolutionary Computation in Bioinformatics. Morgan Kaufmann, San Francisco (2002)
    • (2002) Evolutionary Computation in Bioinformatics
  • 16
    • 0004043766 scopus 로고
    • Genetic algorithms for protein tertiary structure prediction
    • Männer, R, Manderick, B, eds, North Holland, Amsterdam
    • Schulze-Kremer, S.: Genetic algorithms for protein tertiary structure prediction. In Männer, R., Manderick, B., eds.: Parallel Problem Solving from Nature II. North Holland, Amsterdam (1992) 391-400
    • (1992) Parallel Problem Solving from Nature II , pp. 391-400
    • Schulze-Kremer, S.1
  • 18
    • 0345724886 scopus 로고    scopus 로고
    • Reliable classification of two-class cancer data using evolutionary algorithms
    • Deb, K., Raji Reddy, A.: Reliable classification of two-class cancer data using evolutionary algorithms. BioSystems 72 (2003) 111-129
    • (2003) BioSystems , vol.72 , pp. 111-129
    • Deb, K.1    Raji Reddy, A.2
  • 19
    • 4544352979 scopus 로고    scopus 로고
    • An evolutionary rough partitive clustering
    • Mitra, S.: An evolutionary rough partitive clustering. Pattern Recognition Letters 25 (2004) 1439-1449
    • (2004) Pattern Recognition Letters , vol.25 , pp. 1439-1449
    • Mitra, S.1
  • 22
    • 0042168791 scopus 로고    scopus 로고
    • Evolving connectionist systems for knowledge discovery from gene expression data of cancer tissue
    • Futschik, M.E., Reeve, A., Kasabov, N.: Evolving connectionist systems for knowledge discovery from gene expression data of cancer tissue. Artificial Intelligence in Medicine 28 (2003) 165-189
    • (2003) Artificial Intelligence in Medicine , vol.28 , pp. 165-189
    • Futschik, M.E.1    Reeve, A.2    Kasabov, N.3
  • 23
    • 0029922511 scopus 로고    scopus 로고
    • Discovering and understanding genes in human DNA sequence using GRAIL
    • Uberbacher, E.C., Xu, Y., Mural, R.J.: Discovering and understanding genes in human DNA sequence using GRAIL. Methods Enzymol 266 (1996) 259-281
    • (1996) Methods Enzymol , vol.266 , pp. 259-281
    • Uberbacher, E.C.1    Xu, Y.2    Mural, R.J.3
  • 24
    • 0028932291 scopus 로고
    • Analysis of eukaryotic promoter sequences reveals a systematically occurring CT-signal
    • Larsen, N.I., Engelbrecht, J., Brunak, S.: Analysis of eukaryotic promoter sequences reveals a systematically occurring CT-signal. Nucleic Acids Res 23 (1995) 1223-1230
    • (1995) Nucleic Acids Res , vol.23 , pp. 1223-1230
    • Larsen, N.I.1    Engelbrecht, J.2    Brunak, S.3
  • 25
    • 0030627982 scopus 로고    scopus 로고
    • Neural network prediction of translation initiation sites in eukaryotes: Perspectives for EST and genome analysis
    • Pedersen, A.G., Nielsen, H.: Neural network prediction of translation initiation sites in eukaryotes: Perspectives for EST and genome analysis. Ismb 5 (1997) 226-233
    • (1997) Ismb , vol.5 , pp. 226-233
    • Pedersen, A.G.1    Nielsen, H.2
  • 26
    • 0028529307 scopus 로고
    • Knowledge-based artificial neural networks
    • Towell, G.G., Shavlik, J.W.: Knowledge-based artificial neural networks. Artificial Intelligence 70 (1994) 119-165
    • (1994) Artificial Intelligence , vol.70 , pp. 119-165
    • Towell, G.G.1    Shavlik, J.W.2
  • 27
    • 0001659341 scopus 로고    scopus 로고
    • Connectionist theory refinement: Genetically searching the space of network topologies
    • Opitz, D.W., Shavlik, J.W.: Connectionist theory refinement: Genetically searching the space of network topologies. Journal of Artificial Intelligence Research 6 (1997) 177-209
    • (1997) Journal of Artificial Intelligence Research , vol.6 , pp. 177-209
    • Opitz, D.W.1    Shavlik, J.W.2
  • 29
    • 1542576024 scopus 로고    scopus 로고
    • Biological data mining with neural networks: Implementation and application of a flexible decision tree extraction algorithm to genomic problem domains
    • Browne, A., Hudson, B.D., Whitley, D.C., Ford, M.G., Picton, P.: Biological data mining with neural networks: Implementation and application of a flexible decision tree extraction algorithm to genomic problem domains. Neurocomputing 57 (2004) 275-293
    • (2004) Neurocomputing , vol.57 , pp. 275-293
    • Browne, A.1    Hudson, B.D.2    Whitley, D.C.3    Ford, M.G.4    Picton, P.5
  • 30
    • 0030631792 scopus 로고    scopus 로고
    • Extracting rules from neural networks by pruning and hidden-unit splitting
    • Setiono, R.: Extracting rules from neural networks by pruning and hidden-unit splitting. Neural Computation 9 (1997) 205-225
    • (1997) Neural Computation , vol.9 , pp. 205-225
    • Setiono, R.1
  • 31
    • 0030449297 scopus 로고    scopus 로고
    • Kohonen map as a visualization tool for the analysis of protein sequences: Multiple alignments, domains and segments of secondary structures
    • Hanke, J., Reich, J.G.: Kohonen map as a visualization tool for the analysis of protein sequences: Multiple alignments, domains and segments of secondary structures. Comput Applic Biosci 6 (1996) 447-454
    • (1996) Comput Applic Biosci , vol.6 , pp. 447-454
    • Hanke, J.1    Reich, J.G.2
  • 32
    • 0031762518 scopus 로고    scopus 로고
    • Artificial neural network method for predicting HIV protease cleavage sites in protein
    • Cai, Y.D., Yu, H., Chou, K.C.: Artificial neural network method for predicting HIV protease cleavage sites in protein. J. Protein Chem 17 (1998) 607-615
    • (1998) J. Protein Chem , vol.17 , pp. 607-615
    • Cai, Y.D.1    Yu, H.2    Chou, K.C.3
  • 34
    • 0028279918 scopus 로고
    • Self-organized neural maps of human protein sequences
    • Ferran, E.A., Pflugfelder, B., Ferrara, P.: Self-organized neural maps of human protein sequences. Protein Sci 3 (1994) 507-521
    • (1994) Protein Sci , vol.3 , pp. 507-521
    • Ferran, E.A.1    Pflugfelder, B.2    Ferrara, P.3
  • 35
    • 0031703681 scopus 로고    scopus 로고
    • Self-organizing tree-growing network for the classification of protein sequences
    • Wang, H.C., Dopazo, J., de la Fraga, L.G., Zhu, Y.P., Carazo, J.M.: Self-organizing tree-growing network for the classification of protein sequences. Protein Sci 7 (1998) 2613-2622
    • (1998) Protein Sci , vol.7 , pp. 2613-2622
    • Wang, H.C.1    Dopazo, J.2    de la Fraga, L.G.3    Zhu, Y.P.4    Carazo, J.M.5
  • 36
    • 0031595301 scopus 로고    scopus 로고
    • Self-organizing tree-growing network for classifying amino acids
    • Wang, H.C., Dopazo, J., Carazo, J.M.: Self-organizing tree-growing network for classifying amino acids. Bioinformatics 14 (1998) 376-377
    • (1998) Bioinformatics , vol.14 , pp. 376-377
    • Wang, H.C.1    Dopazo, J.2    Carazo, J.M.3
  • 37
    • 0018110116 scopus 로고
    • Prediction of the secondary structure of proteins from their amino acid sequence
    • Chou, P., Fasmann, G.: Prediction of the secondary structure of proteins from their amino acid sequence. Advances in Enzymology 47 (1978) 45-148
    • (1978) Advances in Enzymology , vol.47 , pp. 45-148
    • Chou, P.1    Fasmann, G.2
  • 38
    • 0025155981 scopus 로고
    • A novel approach to prediction of the 3-dimensional structures of protein backbones by neural networks
    • Bohr, H., Bohr, J., Brunak, S., Cotterill, R.M.J., Fredholm, H.: A novel approach to prediction of the 3-dimensional structures of protein backbones by neural networks. FEBS Letters 261 (1990) 43-46
    • (1990) FEBS Letters , vol.261 , pp. 43-46
    • Bohr, H.1    Bohr, J.2    Brunak, S.3    Cotterill, R.M.J.4    Fredholm, H.5
  • 39
    • 0031406438 scopus 로고    scopus 로고
    • Protein distance constraints predicted by neural networks and probability distance functions
    • Lund, O., Frimand, K., Gorodkin, J., Bohr, H., Bohr, J., Hansen, J., Brunak, S.: Protein distance constraints predicted by neural networks and probability distance functions. Protein Eng 10 (1997) 1241-1248
    • (1997) Protein Eng , vol.10 , pp. 1241-1248
    • Lund, O.1    Frimand, K.2    Gorodkin, J.3    Bohr, H.4    Bohr, J.5    Hansen, J.6    Brunak, S.7
  • 40
    • 0029872694 scopus 로고    scopus 로고
    • SAGA: Sequence alignment by genetic algorithm
    • Notredame, C., Higgins, D.G.: SAGA: Sequence alignment by genetic algorithm. Nucleic Acids Research 24 (1996) 1515-1524
    • (1996) Nucleic Acids Research , vol.24 , pp. 1515-1524
    • Notredame, C.1    Higgins, D.G.2
  • 41
    • 0031829993 scopus 로고    scopus 로고
    • COFFEE: An objective function for multiple sequence alignments
    • Notredame, C., Holm, L., Higgins, D.G.: COFFEE: An objective function for multiple sequence alignments. Bioinformatics 14 (1998) 407-422
    • (1998) Bioinformatics , vol.14 , pp. 407-422
    • Notredame, C.1    Holm, L.2    Higgins, D.G.3
  • 47
    • 4544248169 scopus 로고    scopus 로고
    • Interval set clustering of Web users with rough k-means
    • Technical Report No. 2002-002, Dept. of Mathematics and Computer Science, St. Mary's University, Halifax, Canada
    • Lingras, P., West, C.: Interval set clustering of Web users with rough k-means. Technical Report No. 2002-002, Dept. of Mathematics and Computer Science, St. Mary's University, Halifax, Canada (2002)
    • (2002)
    • Lingras, P.1    West, C.2
  • 48
    • 0141561662 scopus 로고
    • Finding minimal reducts using genetic algorithms
    • Technical Report 16/95, Warsaw Institute of Technology, Institute of Computer Science, Poland
    • Wroblewski, J.: Finding minimal reducts using genetic algorithms. Technical Report 16/95, Warsaw Institute of Technology - Institute of Computer Science, Poland (1995)
    • (1995)
    • Wroblewski, J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.