-
1
-
-
0342948903
-
Identification of an extradiol dioxygenase involved in tetralin biodegradation: Gene sequence analysis and purification and characterization of the gene product
-
Andujar, E., M. J. Hernaez, S. R. Kaschabek, W. Reineke, and E. Santero. 2000. Identification of an extradiol dioxygenase involved in tetralin biodegradation: gene sequence analysis and purification and characterization of the gene product. J. Bacteriol. 182:789-795.
-
(2000)
J. Bacteriol
, vol.182
, pp. 789-795
-
-
Andujar, E.1
Hernaez, M.J.2
Kaschabek, S.R.3
Reineke, W.4
Santero, E.5
-
2
-
-
0037804208
-
Site-directed mutagenesis of an extradiol dioxygenase involved in tetralin biodegradation identifies residues important for activity or substrate specificity
-
Andujar, E., and E. Santero. 2003. Site-directed mutagenesis of an extradiol dioxygenase involved in tetralin biodegradation identifies residues important for activity or substrate specificity. Microbiology 149:1559-1567.
-
(2003)
Microbiology
, vol.149
, pp. 1559-1567
-
-
Andujar, E.1
Santero, E.2
-
3
-
-
0016687066
-
The induction of the enzymes of naphthalene metabolism in pseudomonads by salicylate and 2-aminobenzoate
-
Barnsley, E. A. 1975. The induction of the enzymes of naphthalene metabolism in pseudomonads by salicylate and 2-aminobenzoate. J. Gen. Microbiol. 88:193-196.
-
(1975)
J. Gen. Microbiol
, vol.88
, pp. 193-196
-
-
Barnsley, E.A.1
-
4
-
-
0034681304
-
Substrate binding site of naphthalene 1,2-dioxygenase: Functional implications of indole binding
-
Carredano, E., A. Karlsson, B. Kauppi, D. Choudhury, R. E. Parales, J. V. Parales, K. Lee, D. T. Gibson, H. Eklund, and S. Ramaswamy. 2000. Substrate binding site of naphthalene 1,2-dioxygenase: functional implications of indole binding. J. Mol. Biol. 296:701-712.
-
(2000)
J. Mol. Biol
, vol.296
, pp. 701-712
-
-
Carredano, E.1
Karlsson, A.2
Kauppi, B.3
Choudhury, D.4
Parales, R.E.5
Parales, J.V.6
Lee, K.7
Gibson, D.T.8
Eklund, H.9
Ramaswamy, S.10
-
5
-
-
0035863067
-
The black cat/white cat principle of signal integration in bacterial promoters
-
Cases, I., and V. de Lorenzo. 2001. The black cat/white cat principle of signal integration in bacterial promoters. EMBO J. 20:1-11.
-
(2001)
EMBO J
, vol.20
, pp. 1-11
-
-
Cases, I.1
de Lorenzo, V.2
-
6
-
-
13444302680
-
Promoters in the environment: Transcriptional regulation in its natural context
-
Cases, I., and V. de Lorenzo. 2005. Promoters in the environment: transcriptional regulation in its natural context. Nat. Rev. Microbiol. 3:105-118.
-
(2005)
Nat. Rev. Microbiol
, vol.3
, pp. 105-118
-
-
Cases, I.1
de Lorenzo, V.2
-
7
-
-
0029881189
-
Regulatory noise in prokaryotic promoters: How bacteria learn to respond to novel environmental signals
-
de Lorenzo, V., and J. Perez-Martin. 1996. Regulatory noise in prokaryotic promoters: how bacteria learn to respond to novel environmental signals. Mol. Microbiol. 19:1177-1184.
-
(1996)
Mol. Microbiol
, vol.19
, pp. 1177-1184
-
-
de Lorenzo, V.1
Perez-Martin, J.2
-
8
-
-
0033772905
-
Bacterial promoters triggering biodegradation of aromatic pollutants
-
Diaz, E., and M. A. Prieto. 2000. Bacterial promoters triggering biodegradation of aromatic pollutants. Curr. Opin. Biotechnol. 11:467-475.
-
(2000)
Curr. Opin. Biotechnol
, vol.11
, pp. 467-475
-
-
Diaz, E.1
Prieto, M.A.2
-
9
-
-
0016156623
-
Isolation and characterization of a 3-chlorobenzoate degrading pseudomonad
-
Dorn, E., M. Hellwig, W. Reineke, and H. J. Knackmuss. 1974. Isolation and characterization of a 3-chlorobenzoate degrading pseudomonad. Arch. Microbiol. 99:61-70.
-
(1974)
Arch. Microbiol
, vol.99
, pp. 61-70
-
-
Dorn, E.1
Hellwig, M.2
Reineke, W.3
Knackmuss, H.J.4
-
10
-
-
0038182517
-
Interactions of the cbbII promoter-operator region with CbbR and RegA (PrrA) regulators indicate distinct mechanisms to control expression of the two cbb operons of Rhodobacter sphaeroides
-
Dubbs, J. M., and F. R. Tabita. 2003. Interactions of the cbbII promoter-operator region with CbbR and RegA (PrrA) regulators indicate distinct mechanisms to control expression of the two cbb operons of Rhodobacter sphaeroides. J. Biol. Chem. 278:16443-16450.
-
(2003)
J. Biol. Chem
, vol.278
, pp. 16443-16450
-
-
Dubbs, J.M.1
Tabita, F.R.2
-
11
-
-
0037249499
-
The University of Minnesota Biocatalysis/Biodegradation Database: Post-genomic data mining
-
Ellis, L. B., B. K. Hou, W. Kang, and L. P. Wackett. 2003. The University of Minnesota Biocatalysis/Biodegradation Database: post-genomic data mining. Nucleic Acids Res. 31:262-265.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 262-265
-
-
Ellis, L.B.1
Hou, B.K.2
Kang, W.3
Wackett, L.P.4
-
12
-
-
0033694693
-
Activation of the Anabaena nir operon promoter requires both NtcA (CAP family) and NtcB (LysR family) transcription factors
-
Frias, J. E., E. Flores, and A. Herrero. 2000. Activation of the Anabaena nir operon promoter requires both NtcA (CAP family) and NtcB (LysR family) transcription factors. Mol. Microbiol. 38:613-625.
-
(2000)
Mol. Microbiol
, vol.38
, pp. 613-625
-
-
Frias, J.E.1
Flores, E.2
Herrero, A.3
-
13
-
-
0041387548
-
Open reading frame all0601 from Anabaena sp. strain PCC 7120 represents a novel gene, cnaT, required for expression of the nitrate assimilation nir operon
-
Frias, J. E., A. Herrero, and E. Flores. 2003. Open reading frame all0601 from Anabaena sp. strain PCC 7120 represents a novel gene, cnaT, required for expression of the nitrate assimilation nir operon. J. Bacteriol. 185:5037-5044.
-
(2003)
J. Bacteriol
, vol.185
, pp. 5037-5044
-
-
Frias, J.E.1
Herrero, A.2
Flores, E.3
-
15
-
-
0020959710
-
Studies on transformation of Escherichia coli with plasmids
-
Hanahan, D. 1983. Studies on transformation of Escherichia coli with plasmids. J. Mol. Biol. 166:557-580.
-
(1983)
J. Mol. Biol
, vol.166
, pp. 557-580
-
-
Hanahan, D.1
-
16
-
-
0033807114
-
Identification of a serine hydrolase which cleaves the alicyclic ring of tetralin
-
Hernaez, M. J., E. Andujar, J. L. Rios, S. R. Kaschabek, W. Reineke, and E. Santero. 2000. Identification of a serine hydrolase which cleaves the alicyclic ring of tetralin. J. Bacteriol. 182:5448-5453.
-
(2000)
J. Bacteriol
, vol.182
, pp. 5448-5453
-
-
Hernaez, M.J.1
Andujar, E.2
Rios, J.L.3
Kaschabek, S.R.4
Reineke, W.5
Santero, E.6
-
17
-
-
0036795809
-
Identification of a hydratase and a class II aldolase involved in biodegradation of the organic solvent tetralin
-
Hernaez, M. J., B. Floriano, J. J. Rios, and E. Santero. 2002. Identification of a hydratase and a class II aldolase involved in biodegradation of the organic solvent tetralin. Appl. Environ Microbiol. 68:4841-4846.
-
(2002)
Appl. Environ Microbiol
, vol.68
, pp. 4841-4846
-
-
Hernaez, M.J.1
Floriano, B.2
Rios, J.J.3
Santero, E.4
-
18
-
-
0345130028
-
Genetic analysis of biodgradation of tetralin by a Sphingomonas strain
-
Hernaez, M. J., W. Reineke, and E. Santero. 1999. Genetic analysis of biodgradation of tetralin by a Sphingomonas strain. Appl. Environ Microbiol. 65:1806-1810.
-
(1999)
Appl. Environ Microbiol
, vol.65
, pp. 1806-1810
-
-
Hernaez, M.J.1
Reineke, W.2
Santero, E.3
-
19
-
-
0024520745
-
Site-directed mutagenesis by overlap extension using the polymerase chain reaction
-
Ho, S. N., H. D. Hunt, R. M. Horton, J. K. Pullen, and L. R. Pease. 1989. Site-directed mutagenesis by overlap extension using the polymerase chain reaction. Gene 77:51-59.
-
(1989)
Gene
, vol.77
, pp. 51-59
-
-
Ho, S.N.1
Hunt, H.D.2
Horton, R.M.3
Pullen, J.K.4
Pease, L.R.5
-
20
-
-
0031900924
-
Joint transcriptional control of xpsR, the unusual signal integrator of the Ralstonia solanacearum virulence gene regulatory network, by a response regulator and a LysR-type transcriptional activator
-
Huang, J., W. Yindeeyoungyeon, R. P. Garg, T. P. Denny, and M. A. Schell. 1998. Joint transcriptional control of xpsR, the unusual signal integrator of the Ralstonia solanacearum virulence gene regulatory network, by a response regulator and a LysR-type transcriptional activator. J. Bacteriol. 180:2736-2743.
-
(1998)
J. Bacteriol
, vol.180
, pp. 2736-2743
-
-
Huang, J.1
Yindeeyoungyeon, W.2
Garg, R.P.3
Denny, T.P.4
Schell, M.A.5
-
21
-
-
0017250532
-
Adaptation of membrane lipids to alcohols
-
Ingram, L. O. 1976. Adaptation of membrane lipids to alcohols. J. Bacteriol. 125:670-678.
-
(1976)
J. Bacteriol
, vol.125
, pp. 670-678
-
-
Ingram, L.O.1
-
22
-
-
54249116230
-
Genetic regulatory mechanisms in the synthesis of proteins
-
Jacob, F., and J. Monod. 1961. Genetic regulatory mechanisms in the synthesis of proteins. J. Mol. Biol. 3:318-356.
-
(1961)
J. Mol. Biol
, vol.3
, pp. 318-356
-
-
Jacob, F.1
Monod, J.2
-
23
-
-
3142619463
-
Vibrio cholerae AphA uses a novel mechanism for virulence gene activation that involves interaction with the LysR-type regulator AphB at the tcpPH promoter
-
Kovacikova, G., W. Lin, and K. Skorupski. 2004. Vibrio cholerae AphA uses a novel mechanism for virulence gene activation that involves interaction with the LysR-type regulator AphB at the tcpPH promoter. Mol. Microbiol. 53:129-142.
-
(2004)
Mol. Microbiol
, vol.53
, pp. 129-142
-
-
Kovacikova, G.1
Lin, W.2
Skorupski, K.3
-
24
-
-
4444236429
-
Regulation of tetralin biodegradation and identification of genes essential for expression of thn operons
-
Martinez-Perez, O., E. Moreno-Ruiz, B. Floriano, and E. Santero. 2004. Regulation of tetralin biodegradation and identification of genes essential for expression of thn operons. J. Bacteriol. 186:6101-6109.
-
(2004)
J. Bacteriol
, vol.186
, pp. 6101-6109
-
-
Martinez-Perez, O.1
Moreno-Ruiz, E.2
Floriano, B.3
Santero, E.4
-
25
-
-
0032570025
-
Transcriptional activation of the catechol and chlorocatechol operons: Variations on a theme
-
McFall, S. M., S. A. Chugani, and A. M. Chakrabarty. 1998. Transcriptional activation of the catechol and chlorocatechol operons: variations on a theme. Gene 223:257-267.
-
(1998)
Gene
, vol.223
, pp. 257-267
-
-
McFall, S.M.1
Chugani, S.A.2
Chakrabarty, A.M.3
-
26
-
-
0003785155
-
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Miller, J. H. 1972. Experiments in molecular genetics. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(1972)
Experiments in molecular genetics
-
-
Miller, J.H.1
-
27
-
-
0037336362
-
Identification and functional characterization of Sphingomonas macrogolitabida strain TFA genes involved in the first two steps of the tetralin catabolic pathway
-
Moreno-Ruiz, E., M. J. Hernaez, O. Martinez-Perez, and E. Santero. 2003. Identification and functional characterization of Sphingomonas macrogolitabida strain TFA genes involved in the first two steps of the tetralin catabolic pathway. J. Bacteriol. 185:2026-2030.
-
(2003)
J. Bacteriol
, vol.185
, pp. 2026-2030
-
-
Moreno-Ruiz, E.1
Hernaez, M.J.2
Martinez-Perez, O.3
Santero, E.4
-
28
-
-
0030678622
-
Indigo formation by microorganisms expressing styrene monooxygenase activity
-
O'Connor, K. E., A. D. Dobson, and S. Hartmans. 1997. Indigo formation by microorganisms expressing styrene monooxygenase activity. Appl. Environ Microbiol. 63:4287-4291.
-
(1997)
Appl. Environ Microbiol
, vol.63
, pp. 4287-4291
-
-
O'Connor, K.E.1
Dobson, A.D.2
Hartmans, S.3
-
29
-
-
0034051818
-
Substrate specificity of naphthalene dioxygenase: Effect of specific amino acids at the active site of the enzyme
-
Parales, R. E., K. Lee, S. M. Resnick, H. Jiang, D. J. Lessner, and D. T. Gibson. 2000. Substrate specificity of naphthalene dioxygenase: effect of specific amino acids at the active site of the enzyme. J. Bacteriol. 182:1641-1649.
-
(2000)
J. Bacteriol
, vol.182
, pp. 1641-1649
-
-
Parales, R.E.1
Lee, K.2
Resnick, S.M.3
Jiang, H.4
Lessner, D.J.5
Gibson, D.T.6
-
30
-
-
0032989253
-
Aspartate 205 in the catalytic domain of naphthalene dioxygenase is essential for activity
-
Parales, R. E., J. V. Parales, and D. T. Gibson. 1999. Aspartate 205 in the catalytic domain of naphthalene dioxygenase is essential for activity. J. Bacteriol. 181:1831-1837.
-
(1999)
J. Bacteriol
, vol.181
, pp. 1831-1837
-
-
Parales, R.E.1
Parales, J.V.2
Gibson, D.T.3
-
31
-
-
0026495342
-
Roles of CatR and cis,cis-muconate in activation of the catBC operon, which is involved in benzoate degradation in Pseudomonas putida
-
Parsek, M. R., D. L. Shinabarger, R. K. Rothmel, and A. M. Chakrabarty. 1992. Roles of CatR and cis,cis-muconate in activation of the catBC operon, which is involved in benzoate degradation in Pseudomonas putida. J. Bacteriol. 174:7798-7806.
-
(1992)
J. Bacteriol
, vol.174
, pp. 7798-7806
-
-
Parsek, M.R.1
Shinabarger, D.L.2
Rothmel, R.K.3
Chakrabarty, A.M.4
-
32
-
-
0036405482
-
Mechanisms of solvent tolerance in gram-negative bacteria
-
Ramos, J. L., E. Duque, M. T. Gallegos, P. Godoy, M. I. Ramos-Gonzalez, A. Rojas, W. Teran, and A. Segura. 2002. Mechanisms of solvent tolerance in gram-negative bacteria. Annu. Rev. Microbiol. 56:743-768.
-
(2002)
Annu. Rev. Microbiol
, vol.56
, pp. 743-768
-
-
Ramos, J.L.1
Duque, E.2
Gallegos, M.T.3
Godoy, P.4
Ramos-Gonzalez, M.I.5
Rojas, A.6
Teran, W.7
Segura, A.8
-
33
-
-
12344284819
-
Stable long-term indigo production by overexpression of dioxygenase genes using a chromosomal integrated cascade expression circuit
-
Royo, J. L., E. Moreno-Ruiz, A. Cebolla, and E. Santero. 2005. Stable long-term indigo production by overexpression of dioxygenase genes using a chromosomal integrated cascade expression circuit. J. Biotechnol. 116:113-124.
-
(2005)
J. Biotechnol
, vol.116
, pp. 113-124
-
-
Royo, J.L.1
Moreno-Ruiz, E.2
Cebolla, A.3
Santero, E.4
-
34
-
-
0022243202
-
Transcriptional control of the nah and sal hydrocarbon-degradation operons by the nahR gene product
-
Scbell, M. A. 1985. Transcriptional control of the nah and sal hydrocarbon-degradation operons by the nahR gene product. Gene 36:301-309.
-
(1985)
Gene
, vol.36
, pp. 301-309
-
-
Scbell, M.A.1
-
35
-
-
0344475305
-
Integrated regulation in response to aromatic compounds: From signal sensing to attractive behaviour
-
Shingler, V. 2003. Integrated regulation in response to aromatic compounds: from signal sensing to attractive behaviour. Environ Microbiol. 5:1226-1241.
-
(2003)
Environ Microbiol
, vol.5
, pp. 1226-1241
-
-
Shingler, V.1
-
36
-
-
0029048826
-
Mechanisms of membrane toxicity of hydrocarbons
-
Sikkema, J., J. A. de Bont, and B. Poolman. 1995. Mechanisms of membrane toxicity of hydrocarbons. Microbiol. Rev. 59:201-222.
-
(1995)
Microbiol. Rev
, vol.59
, pp. 201-222
-
-
Sikkema, J.1
de Bont, J.A.2
Poolman, B.3
-
37
-
-
4544275675
-
Bacterial transcriptional regulators for degradation pathways of aromatic compounds
-
Tropel, D., and J. R. van der Meer. 2004. Bacterial transcriptional regulators for degradation pathways of aromatic compounds. Microbiol. Mol. Biol. Rev. 68:474-500.
-
(2004)
Microbiol. Mol. Biol. Rev
, vol.68
, pp. 474-500
-
-
Tropel, D.1
van der Meer, J.R.2
|