메뉴 건너뛰기




Volumn 189, Issue 10, 2007, Pages 3768-3775

Integrated response to inducers by communication between a catabolic pathway and its regulatory system

Author keywords

[No Author keywords available]

Indexed keywords

DIOXYGENASE;

EID: 34248336957     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.00057-07     Document Type: Article
Times cited : (15)

References (37)
  • 1
    • 0342948903 scopus 로고    scopus 로고
    • Identification of an extradiol dioxygenase involved in tetralin biodegradation: Gene sequence analysis and purification and characterization of the gene product
    • Andujar, E., M. J. Hernaez, S. R. Kaschabek, W. Reineke, and E. Santero. 2000. Identification of an extradiol dioxygenase involved in tetralin biodegradation: gene sequence analysis and purification and characterization of the gene product. J. Bacteriol. 182:789-795.
    • (2000) J. Bacteriol , vol.182 , pp. 789-795
    • Andujar, E.1    Hernaez, M.J.2    Kaschabek, S.R.3    Reineke, W.4    Santero, E.5
  • 2
    • 0037804208 scopus 로고    scopus 로고
    • Site-directed mutagenesis of an extradiol dioxygenase involved in tetralin biodegradation identifies residues important for activity or substrate specificity
    • Andujar, E., and E. Santero. 2003. Site-directed mutagenesis of an extradiol dioxygenase involved in tetralin biodegradation identifies residues important for activity or substrate specificity. Microbiology 149:1559-1567.
    • (2003) Microbiology , vol.149 , pp. 1559-1567
    • Andujar, E.1    Santero, E.2
  • 3
    • 0016687066 scopus 로고
    • The induction of the enzymes of naphthalene metabolism in pseudomonads by salicylate and 2-aminobenzoate
    • Barnsley, E. A. 1975. The induction of the enzymes of naphthalene metabolism in pseudomonads by salicylate and 2-aminobenzoate. J. Gen. Microbiol. 88:193-196.
    • (1975) J. Gen. Microbiol , vol.88 , pp. 193-196
    • Barnsley, E.A.1
  • 5
    • 0035863067 scopus 로고    scopus 로고
    • The black cat/white cat principle of signal integration in bacterial promoters
    • Cases, I., and V. de Lorenzo. 2001. The black cat/white cat principle of signal integration in bacterial promoters. EMBO J. 20:1-11.
    • (2001) EMBO J , vol.20 , pp. 1-11
    • Cases, I.1    de Lorenzo, V.2
  • 6
    • 13444302680 scopus 로고    scopus 로고
    • Promoters in the environment: Transcriptional regulation in its natural context
    • Cases, I., and V. de Lorenzo. 2005. Promoters in the environment: transcriptional regulation in its natural context. Nat. Rev. Microbiol. 3:105-118.
    • (2005) Nat. Rev. Microbiol , vol.3 , pp. 105-118
    • Cases, I.1    de Lorenzo, V.2
  • 7
    • 0029881189 scopus 로고    scopus 로고
    • Regulatory noise in prokaryotic promoters: How bacteria learn to respond to novel environmental signals
    • de Lorenzo, V., and J. Perez-Martin. 1996. Regulatory noise in prokaryotic promoters: how bacteria learn to respond to novel environmental signals. Mol. Microbiol. 19:1177-1184.
    • (1996) Mol. Microbiol , vol.19 , pp. 1177-1184
    • de Lorenzo, V.1    Perez-Martin, J.2
  • 8
    • 0033772905 scopus 로고    scopus 로고
    • Bacterial promoters triggering biodegradation of aromatic pollutants
    • Diaz, E., and M. A. Prieto. 2000. Bacterial promoters triggering biodegradation of aromatic pollutants. Curr. Opin. Biotechnol. 11:467-475.
    • (2000) Curr. Opin. Biotechnol , vol.11 , pp. 467-475
    • Diaz, E.1    Prieto, M.A.2
  • 9
    • 0016156623 scopus 로고
    • Isolation and characterization of a 3-chlorobenzoate degrading pseudomonad
    • Dorn, E., M. Hellwig, W. Reineke, and H. J. Knackmuss. 1974. Isolation and characterization of a 3-chlorobenzoate degrading pseudomonad. Arch. Microbiol. 99:61-70.
    • (1974) Arch. Microbiol , vol.99 , pp. 61-70
    • Dorn, E.1    Hellwig, M.2    Reineke, W.3    Knackmuss, H.J.4
  • 10
    • 0038182517 scopus 로고    scopus 로고
    • Interactions of the cbbII promoter-operator region with CbbR and RegA (PrrA) regulators indicate distinct mechanisms to control expression of the two cbb operons of Rhodobacter sphaeroides
    • Dubbs, J. M., and F. R. Tabita. 2003. Interactions of the cbbII promoter-operator region with CbbR and RegA (PrrA) regulators indicate distinct mechanisms to control expression of the two cbb operons of Rhodobacter sphaeroides. J. Biol. Chem. 278:16443-16450.
    • (2003) J. Biol. Chem , vol.278 , pp. 16443-16450
    • Dubbs, J.M.1    Tabita, F.R.2
  • 11
    • 0037249499 scopus 로고    scopus 로고
    • The University of Minnesota Biocatalysis/Biodegradation Database: Post-genomic data mining
    • Ellis, L. B., B. K. Hou, W. Kang, and L. P. Wackett. 2003. The University of Minnesota Biocatalysis/Biodegradation Database: post-genomic data mining. Nucleic Acids Res. 31:262-265.
    • (2003) Nucleic Acids Res , vol.31 , pp. 262-265
    • Ellis, L.B.1    Hou, B.K.2    Kang, W.3    Wackett, L.P.4
  • 12
    • 0033694693 scopus 로고    scopus 로고
    • Activation of the Anabaena nir operon promoter requires both NtcA (CAP family) and NtcB (LysR family) transcription factors
    • Frias, J. E., E. Flores, and A. Herrero. 2000. Activation of the Anabaena nir operon promoter requires both NtcA (CAP family) and NtcB (LysR family) transcription factors. Mol. Microbiol. 38:613-625.
    • (2000) Mol. Microbiol , vol.38 , pp. 613-625
    • Frias, J.E.1    Flores, E.2    Herrero, A.3
  • 13
    • 0041387548 scopus 로고    scopus 로고
    • Open reading frame all0601 from Anabaena sp. strain PCC 7120 represents a novel gene, cnaT, required for expression of the nitrate assimilation nir operon
    • Frias, J. E., A. Herrero, and E. Flores. 2003. Open reading frame all0601 from Anabaena sp. strain PCC 7120 represents a novel gene, cnaT, required for expression of the nitrate assimilation nir operon. J. Bacteriol. 185:5037-5044.
    • (2003) J. Bacteriol , vol.185 , pp. 5037-5044
    • Frias, J.E.1    Herrero, A.2    Flores, E.3
  • 15
    • 0020959710 scopus 로고
    • Studies on transformation of Escherichia coli with plasmids
    • Hanahan, D. 1983. Studies on transformation of Escherichia coli with plasmids. J. Mol. Biol. 166:557-580.
    • (1983) J. Mol. Biol , vol.166 , pp. 557-580
    • Hanahan, D.1
  • 16
    • 0033807114 scopus 로고    scopus 로고
    • Identification of a serine hydrolase which cleaves the alicyclic ring of tetralin
    • Hernaez, M. J., E. Andujar, J. L. Rios, S. R. Kaschabek, W. Reineke, and E. Santero. 2000. Identification of a serine hydrolase which cleaves the alicyclic ring of tetralin. J. Bacteriol. 182:5448-5453.
    • (2000) J. Bacteriol , vol.182 , pp. 5448-5453
    • Hernaez, M.J.1    Andujar, E.2    Rios, J.L.3    Kaschabek, S.R.4    Reineke, W.5    Santero, E.6
  • 17
    • 0036795809 scopus 로고    scopus 로고
    • Identification of a hydratase and a class II aldolase involved in biodegradation of the organic solvent tetralin
    • Hernaez, M. J., B. Floriano, J. J. Rios, and E. Santero. 2002. Identification of a hydratase and a class II aldolase involved in biodegradation of the organic solvent tetralin. Appl. Environ Microbiol. 68:4841-4846.
    • (2002) Appl. Environ Microbiol , vol.68 , pp. 4841-4846
    • Hernaez, M.J.1    Floriano, B.2    Rios, J.J.3    Santero, E.4
  • 18
    • 0345130028 scopus 로고    scopus 로고
    • Genetic analysis of biodgradation of tetralin by a Sphingomonas strain
    • Hernaez, M. J., W. Reineke, and E. Santero. 1999. Genetic analysis of biodgradation of tetralin by a Sphingomonas strain. Appl. Environ Microbiol. 65:1806-1810.
    • (1999) Appl. Environ Microbiol , vol.65 , pp. 1806-1810
    • Hernaez, M.J.1    Reineke, W.2    Santero, E.3
  • 19
    • 0024520745 scopus 로고
    • Site-directed mutagenesis by overlap extension using the polymerase chain reaction
    • Ho, S. N., H. D. Hunt, R. M. Horton, J. K. Pullen, and L. R. Pease. 1989. Site-directed mutagenesis by overlap extension using the polymerase chain reaction. Gene 77:51-59.
    • (1989) Gene , vol.77 , pp. 51-59
    • Ho, S.N.1    Hunt, H.D.2    Horton, R.M.3    Pullen, J.K.4    Pease, L.R.5
  • 20
    • 0031900924 scopus 로고    scopus 로고
    • Joint transcriptional control of xpsR, the unusual signal integrator of the Ralstonia solanacearum virulence gene regulatory network, by a response regulator and a LysR-type transcriptional activator
    • Huang, J., W. Yindeeyoungyeon, R. P. Garg, T. P. Denny, and M. A. Schell. 1998. Joint transcriptional control of xpsR, the unusual signal integrator of the Ralstonia solanacearum virulence gene regulatory network, by a response regulator and a LysR-type transcriptional activator. J. Bacteriol. 180:2736-2743.
    • (1998) J. Bacteriol , vol.180 , pp. 2736-2743
    • Huang, J.1    Yindeeyoungyeon, W.2    Garg, R.P.3    Denny, T.P.4    Schell, M.A.5
  • 21
    • 0017250532 scopus 로고
    • Adaptation of membrane lipids to alcohols
    • Ingram, L. O. 1976. Adaptation of membrane lipids to alcohols. J. Bacteriol. 125:670-678.
    • (1976) J. Bacteriol , vol.125 , pp. 670-678
    • Ingram, L.O.1
  • 22
    • 54249116230 scopus 로고
    • Genetic regulatory mechanisms in the synthesis of proteins
    • Jacob, F., and J. Monod. 1961. Genetic regulatory mechanisms in the synthesis of proteins. J. Mol. Biol. 3:318-356.
    • (1961) J. Mol. Biol , vol.3 , pp. 318-356
    • Jacob, F.1    Monod, J.2
  • 23
    • 3142619463 scopus 로고    scopus 로고
    • Vibrio cholerae AphA uses a novel mechanism for virulence gene activation that involves interaction with the LysR-type regulator AphB at the tcpPH promoter
    • Kovacikova, G., W. Lin, and K. Skorupski. 2004. Vibrio cholerae AphA uses a novel mechanism for virulence gene activation that involves interaction with the LysR-type regulator AphB at the tcpPH promoter. Mol. Microbiol. 53:129-142.
    • (2004) Mol. Microbiol , vol.53 , pp. 129-142
    • Kovacikova, G.1    Lin, W.2    Skorupski, K.3
  • 24
    • 4444236429 scopus 로고    scopus 로고
    • Regulation of tetralin biodegradation and identification of genes essential for expression of thn operons
    • Martinez-Perez, O., E. Moreno-Ruiz, B. Floriano, and E. Santero. 2004. Regulation of tetralin biodegradation and identification of genes essential for expression of thn operons. J. Bacteriol. 186:6101-6109.
    • (2004) J. Bacteriol , vol.186 , pp. 6101-6109
    • Martinez-Perez, O.1    Moreno-Ruiz, E.2    Floriano, B.3    Santero, E.4
  • 25
    • 0032570025 scopus 로고    scopus 로고
    • Transcriptional activation of the catechol and chlorocatechol operons: Variations on a theme
    • McFall, S. M., S. A. Chugani, and A. M. Chakrabarty. 1998. Transcriptional activation of the catechol and chlorocatechol operons: variations on a theme. Gene 223:257-267.
    • (1998) Gene , vol.223 , pp. 257-267
    • McFall, S.M.1    Chugani, S.A.2    Chakrabarty, A.M.3
  • 26
    • 0003785155 scopus 로고
    • Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
    • Miller, J. H. 1972. Experiments in molecular genetics. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
    • (1972) Experiments in molecular genetics
    • Miller, J.H.1
  • 27
    • 0037336362 scopus 로고    scopus 로고
    • Identification and functional characterization of Sphingomonas macrogolitabida strain TFA genes involved in the first two steps of the tetralin catabolic pathway
    • Moreno-Ruiz, E., M. J. Hernaez, O. Martinez-Perez, and E. Santero. 2003. Identification and functional characterization of Sphingomonas macrogolitabida strain TFA genes involved in the first two steps of the tetralin catabolic pathway. J. Bacteriol. 185:2026-2030.
    • (2003) J. Bacteriol , vol.185 , pp. 2026-2030
    • Moreno-Ruiz, E.1    Hernaez, M.J.2    Martinez-Perez, O.3    Santero, E.4
  • 28
    • 0030678622 scopus 로고    scopus 로고
    • Indigo formation by microorganisms expressing styrene monooxygenase activity
    • O'Connor, K. E., A. D. Dobson, and S. Hartmans. 1997. Indigo formation by microorganisms expressing styrene monooxygenase activity. Appl. Environ Microbiol. 63:4287-4291.
    • (1997) Appl. Environ Microbiol , vol.63 , pp. 4287-4291
    • O'Connor, K.E.1    Dobson, A.D.2    Hartmans, S.3
  • 29
    • 0034051818 scopus 로고    scopus 로고
    • Substrate specificity of naphthalene dioxygenase: Effect of specific amino acids at the active site of the enzyme
    • Parales, R. E., K. Lee, S. M. Resnick, H. Jiang, D. J. Lessner, and D. T. Gibson. 2000. Substrate specificity of naphthalene dioxygenase: effect of specific amino acids at the active site of the enzyme. J. Bacteriol. 182:1641-1649.
    • (2000) J. Bacteriol , vol.182 , pp. 1641-1649
    • Parales, R.E.1    Lee, K.2    Resnick, S.M.3    Jiang, H.4    Lessner, D.J.5    Gibson, D.T.6
  • 30
    • 0032989253 scopus 로고    scopus 로고
    • Aspartate 205 in the catalytic domain of naphthalene dioxygenase is essential for activity
    • Parales, R. E., J. V. Parales, and D. T. Gibson. 1999. Aspartate 205 in the catalytic domain of naphthalene dioxygenase is essential for activity. J. Bacteriol. 181:1831-1837.
    • (1999) J. Bacteriol , vol.181 , pp. 1831-1837
    • Parales, R.E.1    Parales, J.V.2    Gibson, D.T.3
  • 31
    • 0026495342 scopus 로고
    • Roles of CatR and cis,cis-muconate in activation of the catBC operon, which is involved in benzoate degradation in Pseudomonas putida
    • Parsek, M. R., D. L. Shinabarger, R. K. Rothmel, and A. M. Chakrabarty. 1992. Roles of CatR and cis,cis-muconate in activation of the catBC operon, which is involved in benzoate degradation in Pseudomonas putida. J. Bacteriol. 174:7798-7806.
    • (1992) J. Bacteriol , vol.174 , pp. 7798-7806
    • Parsek, M.R.1    Shinabarger, D.L.2    Rothmel, R.K.3    Chakrabarty, A.M.4
  • 33
    • 12344284819 scopus 로고    scopus 로고
    • Stable long-term indigo production by overexpression of dioxygenase genes using a chromosomal integrated cascade expression circuit
    • Royo, J. L., E. Moreno-Ruiz, A. Cebolla, and E. Santero. 2005. Stable long-term indigo production by overexpression of dioxygenase genes using a chromosomal integrated cascade expression circuit. J. Biotechnol. 116:113-124.
    • (2005) J. Biotechnol , vol.116 , pp. 113-124
    • Royo, J.L.1    Moreno-Ruiz, E.2    Cebolla, A.3    Santero, E.4
  • 34
    • 0022243202 scopus 로고
    • Transcriptional control of the nah and sal hydrocarbon-degradation operons by the nahR gene product
    • Scbell, M. A. 1985. Transcriptional control of the nah and sal hydrocarbon-degradation operons by the nahR gene product. Gene 36:301-309.
    • (1985) Gene , vol.36 , pp. 301-309
    • Scbell, M.A.1
  • 35
    • 0344475305 scopus 로고    scopus 로고
    • Integrated regulation in response to aromatic compounds: From signal sensing to attractive behaviour
    • Shingler, V. 2003. Integrated regulation in response to aromatic compounds: from signal sensing to attractive behaviour. Environ Microbiol. 5:1226-1241.
    • (2003) Environ Microbiol , vol.5 , pp. 1226-1241
    • Shingler, V.1
  • 36
    • 0029048826 scopus 로고
    • Mechanisms of membrane toxicity of hydrocarbons
    • Sikkema, J., J. A. de Bont, and B. Poolman. 1995. Mechanisms of membrane toxicity of hydrocarbons. Microbiol. Rev. 59:201-222.
    • (1995) Microbiol. Rev , vol.59 , pp. 201-222
    • Sikkema, J.1    de Bont, J.A.2    Poolman, B.3
  • 37
    • 4544275675 scopus 로고    scopus 로고
    • Bacterial transcriptional regulators for degradation pathways of aromatic compounds
    • Tropel, D., and J. R. van der Meer. 2004. Bacterial transcriptional regulators for degradation pathways of aromatic compounds. Microbiol. Mol. Biol. Rev. 68:474-500.
    • (2004) Microbiol. Mol. Biol. Rev , vol.68 , pp. 474-500
    • Tropel, D.1    van der Meer, J.R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.