-
1
-
-
0026558894
-
Construction of a 3-chlorobiphenyl-utilizing recombinant from an intergeneric mating
-
Adams, R. H., Huang, C.-M., Higson, F. K., Brenner, V. & Focht, D. D. (1992). Construction of a 3-chlorobiphenyl-utilizing recombinant from an intergeneric mating. Appl Environ Microbiol 58, 647-654.
-
(1992)
Appl. Environ. Microbiol.
, vol.58
, pp. 647-654
-
-
Adams, R.H.1
Huang, C.-M.2
Higson, F.K.3
Brenner, V.4
Focht, D.D.5
-
2
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S. F., Madden, T. L., Schaffer A. A., Zhang, J., Zhang, Z., Miller, W. & Lipman, D. J. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25, 3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
3
-
-
0342948903
-
Identification of an extradiol dioxygenase involved in tetralin biodegradation: Gene sequence analysis and purification and characterization of the gene product
-
Andújar, E., Hernáez, M. J., Kaschabek, S. R., Reineke, W. & Santero, E. (2000). Identification of an extradiol dioxygenase involved in tetralin biodegradation: gene sequence analysis and purification and characterization of the gene product. J Bacteriol 182, 789-795.
-
(2000)
J. Bacteriol.
, vol.182
, pp. 789-795
-
-
Andújar, E.1
Hernáez, M.J.2
Kaschabek, S.R.3
Reineke, W.4
Santero, E.5
-
4
-
-
0027250341
-
Three different 2,3-Dihydroxybiphenyl-1,2-dioxygenase genes in the gram-positive polychlorobiphenyl-degrading bacterium Rhodococcus globerulus P6
-
Asturias, J. A. & Timmis, K. N. (1993). Three different 2,3-Dihydroxybiphenyl-1,2-dioxygenase genes in the gram-positive polychlorobiphenyl-degrading bacterium Rhodococcus globerulus P6. J Bacteriol 175, 4631-4640.
-
(1993)
J. Bacteriol.
, vol.175
, pp. 4631-4640
-
-
Asturias, J.A.1
Timmis, K.N.2
-
5
-
-
0017184389
-
A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding
-
Bradford, M. M. (1976). A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72, 248-254.
-
(1976)
Anal. Biochem.
, vol.72
, pp. 248-254
-
-
Bradford, M.M.1
-
6
-
-
0035822094
-
Solving the riddle of the intradiol and extradiol catechol dioxygenases: How do enzymes control hydroperoxide rearrangements?
-
2001
-
Bugg, T. D. H. & Lin, G. (2001). Solving the riddle of the intradiol and extradiol catechol dioxygenases: how do enzymes control hydroperoxide rearrangements? Chem Commun 2001, 941-952.
-
(2001)
Chem. Commun.
, pp. 941-952
-
-
Bugg, T.D.H.1
Lin, G.2
-
7
-
-
0029846961
-
Evolutionary relationships among extradiol dioxygenases
-
Eltis, L. D. & Bolin, J. T. (1996). Evolutionary relationships among extradiol dioxygenases. J Bacteriol 178, 5930-5937.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 5930-5937
-
-
Eltis, L.D.1
Bolin, J.T.2
-
8
-
-
0027509616
-
Purification and crystallition of 2,3-dihydroxybiphenyl 1,2-dioxygenase
-
Eltis, L. D., Hofmann, B., Hecht, H. J., Lunsdorf, H. & Timmis, K. N. (1993). Purification and crystallition of 2,3-dihydroxybiphenyl 1,2-dioxygenase. J Biol Chem 268, 2727-2732.
-
(1993)
J. Biol. Chem.
, vol.268
, pp. 2727-2732
-
-
Eltis, L.D.1
Hofmann, B.2
Hecht, H.J.3
Lunsdorf, H.4
Timmis, K.N.5
-
9
-
-
0029829834
-
Mechanism of coordinated synthesis of the antagonistic regulatory proteins NifL and NifA of Klebsiella pneumoniae
-
Govantes, F., Molina-López, J. A. & Santero, E. (1996). Mechanism of coordinated synthesis of the antagonistic regulatory proteins NifL and NifA of Klebsiella pneumoniae. J Bacteriol 178, 6817-6823.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 6817-6823
-
-
Govantes, F.1
Molina-López, J.A.2
Santero, E.3
-
10
-
-
0031473847
-
SWISS-MODEL and the Swiss-Pdb viewer: An environment for comparative protein modeling
-
Guex, N. & Peitsh, M. C. (1997). SWISS-MODEL and the Swiss-Pdb viewer: an environment for comparative protein modeling. Electrophoresis 183, 2714-2723.
-
(1997)
Electrophoresis
, vol.183
, pp. 2714-2723
-
-
Guex, N.1
Peitsh, M.C.2
-
11
-
-
0028862027
-
Crystal structure of the biphenyl-cleaving extradiol dioxygenase from a PCB-degrading pseudomonad
-
Han, S., Eltis, L. D., Timmis, K. N., Muchmore, S. W. & Bolin, J. T. (1995). Crystal structure of the biphenyl-cleaving extradiol dioxygenase from a PCB-degrading pseudomonad. Science 270, 976-980.
-
(1995)
Science
, vol.270
, pp. 976-980
-
-
Han, S.1
Eltis, L.D.2
Timmis, K.N.3
Muchmore, S.W.4
Bolin, J.T.5
-
12
-
-
0020959710
-
Studies on transformation of Escherichia coli with plasmids
-
Hanahan, D. (1983). Studies on transformation of Escherichia coli with plasmids. J Mol Biol 166, 557-580.
-
(1983)
J. Mol. Biol.
, vol.166
, pp. 557-580
-
-
Hanahan, D.1
-
13
-
-
0027442082
-
Characterization of 2,2′,3-trihydroxybiphenyl dioxygenase, an extradiol dioxygenase from the dibenzofuran- and dibenzo-p-dioxin-degrading bacterium Sphingomonas sp. strain RW1
-
Happe, B., Eltis, L. D., Poth, H., Hedderich, R. & Timmis, K. N. (1993). Characterization of 2,2′,3-trihydroxybiphenyl dioxygenase, an extradiol dioxygenase from the dibenzofuran- and dibenzo-p-dioxin-degrading bacterium Sphingomonas sp. strain RW1. J Bacteriol 175, 7313-7320.
-
(1993)
J. Bacteriol.
, vol.175
, pp. 7313-7320
-
-
Happe, B.1
Eltis, L.D.2
Poth, H.3
Hedderich, R.4
Timmis, K.N.5
-
14
-
-
0024451702
-
Bacterial aromatic ring-cleavage enzymes are classified into two different gene families
-
Harayama, S. & Rekik, M. (1989). Bacterial aromatic ring-cleavage enzymes are classified into two different gene families. J Biol Chem 264, 15328-15333.
-
(1989)
J. Biol. Chem.
, vol.264
, pp. 15328-15333
-
-
Harayama, S.1
Rekik, M.2
-
15
-
-
0028840818
-
Characterization of a 2,3-dihydroxybiphenyl dioxygenase from the naphthalenesulfonate-degrading bacterium strain BN6
-
Heiss, G., Stolz, A., Kuhm, A. E, Müller, C., Klein, J., Altenbuchner, J. & Knackmuss, H.-J. (1995). Characterization of a 2,3-dihydroxybiphenyl dioxygenase from the naphthalenesulfonate-degrading bacterium strain BN6. J Bacteriol 177, 5865-5871.
-
(1995)
J. Bacteriol.
, vol.177
, pp. 5865-5871
-
-
Heiss, G.1
Stolz, A.2
Kuhm, A.E.3
Müller, C.4
Klein, J.5
Altenbuchner, J.6
Knackmuss, H.-J.7
-
16
-
-
1842328640
-
Analysis of a new dimeric extradiol dioxygenase from a naphthalenesulfonate-degrading sphingomonad
-
Heiss, G., Müller, C., Altenbuchner, J. & Stolz, A. (1997). Analysis of a new dimeric extradiol dioxygenase from a naphthalenesulfonate-degrading sphingomonad. Microbiology 143, 1691-1699.
-
(1997)
Microbiology
, vol.143
, pp. 1691-1699
-
-
Heiss, G.1
Müller, C.2
Altenbuchner, J.3
Stolz, A.4
-
17
-
-
0024520745
-
Site-directed mutagenesis by overlap extension using the polymerase chain reaction
-
Ho, S. N., Hunt, H. D., Horton, R. M., Pullen, J. K. & Pease, L. R. (1989). Site-directed mutagenesis by overlap extension using the polymerase chain reaction. Gene 77, 51-59.
-
(1989)
Gene
, vol.77
, pp. 51-59
-
-
Ho, S.N.1
Hunt, H.D.2
Horton, R.M.3
Pullen, J.K.4
Pease, L.R.5
-
18
-
-
0029056671
-
Molecular and biochemical characterization of two meta-cleavage dioxygenases involved in biphenyl and m-xylene degradation by Beijerinckia sp. strain B1
-
Kim, E. & Zylstra, G. (1995). Molecular and biochemical characterization of two meta-cleavage dioxygenases involved in biphenyl and m-xylene degradation by Beijerinckia sp. strain B1. J Bacteriol 177, 3095-3103.
-
(1995)
J. Bacteriol.
, vol.177
, pp. 3095-3103
-
-
Kim, E.1
Zylstra, G.2
-
19
-
-
0025773011
-
Purification and characterization of a 1,2-dihydroxynaphthalene dioxygenase from a bacterium that degrades naphthalenesulfonic acids
-
Kuhm, A. E., Stolz, A., Ngai, K. & Knackmuss, H. J. (1991). Purification and characterization of a 1,2-dihydroxynaphthalene dioxygenase from a bacterium that degrades naphthalenesulfonic acids. J Bacteriol 173, 3795-3802.
-
(1991)
J. Bacteriol.
, vol.173
, pp. 3795-3802
-
-
Kuhm, A.E.1
Stolz, A.2
Ngai, K.3
Knackmuss, H.J.4
-
20
-
-
0023613953
-
Rapid and efficient site-directed mutagenesis without phenotypic selection
-
Kunkel, T., Roberts, J. D. & Zakour, R. A. (1987). Rapid and efficient site-directed mutagenesis without phenotypic selection. Methods Enzymol 154, 367-382.
-
(1987)
Methods Enzymol.
, vol.154
, pp. 367-382
-
-
Kunkel, T.1
Roberts, J.D.2
Zakour, R.A.3
-
21
-
-
0000465301
-
The nature of the defect in tyrosine metabolism in alkaptonuria
-
La Du, B. N., Zannoni, V. G., Laster, L. & Seegmiller, J. E. (1958). The nature of the defect in tyrosine metabolism in alkaptonuria. J Biol Chem 230, 251-260.
-
(1958)
J. Biol. Chem.
, vol.230
, pp. 251-260
-
-
La Du, B.N.1
Zannoni, V.G.2
Laster, L.3
Seegmiller, J.E.4
-
22
-
-
0039302669
-
Dioxygen activation by enzymes with mononuclear non-heme iron active sites
-
Que, L. & Ho, R. Y. N. (1996). Dioxygen activation by enzymes with mononuclear non-heme iron active sites. Chem Rev 96, 2607-2624.
-
(1996)
Chem. Rev.
, vol.96
, pp. 2607-2624
-
-
Que, L.1
Ho, R.Y.N.2
-
23
-
-
0024024251
-
3-Hydroxyanthranilate oxygenase activity is increased in the brains of Huntington disease victims
-
Schwarcz, R., Okuno, E., White, R. J., Bird, E. D. & Whetsell, W. O., Jr (1988). 3-Hydroxyanthranilate oxygenase activity is increased in the brains of Huntington disease victims. Proc Natl Acad Sci U S A 85, 4079-4081.
-
(1988)
Proc. Natl. Acad. Sci. U S A
, vol.85
, pp. 4079-4081
-
-
Schwarcz, R.1
Okuno, E.2
White, R.J.3
Bird, E.D.4
Whetsell W.O., Jr.5
-
24
-
-
0030008087
-
Three-dimensional structures of free form and two substrate complexes of an extradiol ring-cleavage type dioxygenase, the BphC enzyme from Pseudomonas sp. strain KKS102
-
Senda, T., Sugiyama, K., Narita, H., Yamamoto, T., Kimbara, T., Fukuda, M., Sato, M., Yano, K. & Mitsui, Y. (1996). Three-dimensional structures of free form and two substrate complexes of an extradiol ring-cleavage type dioxygenase, the BphC enzyme from Pseudomonas sp. strain KKS102. J Mol Biol 255, 735-752.
-
(1996)
J. Mol. Biol.
, vol.255
, pp. 735-752
-
-
Senda, T.1
Sugiyama, K.2
Narita, H.3
Yamamoto, T.4
Kimbara, T.5
Fukuda, M.6
Sato, M.7
Yano, K.8
Mitsui, Y.9
-
25
-
-
0038280907
-
Structural studies on the "BphC" enzyme-a non-heme iron dioxygenase from a Pseudomonas sp
-
Senda, T., Sugimoto, K., Ishikazi, T., Yamada, T., Okano, M., Masai, E., Fukuda, M. & Mitsui, Y. (1997). Structural studies on the "BphC" enzyme-a non-heme iron dioxygenase from a Pseudomonas sp. J Inorg Biochem 67, 336.
-
(1997)
J. Inorg. Biochem.
, vol.67
, pp. 336
-
-
Senda, T.1
Sugimoto, K.2
Ishikazi, T.3
Yamada, T.4
Okano, M.5
Masai, E.6
Fukuda, M.7
Mitsui, Y.8
-
26
-
-
0029038688
-
X-ray absorption spectroscopic studies of the Fe(II) active site of catechol 2,3-dioxygenase. Implications for the extradiol cleavage mechanism
-
Shu, L., Chiou, Y. M., Orville, A. M., Miller, M. A., Lipscomb, J. D. & Que, L. Jr (1995). X-ray absorption spectroscopic studies of the Fe(II) active site of catechol 2,3-dioxygenase. Implications for the extradiol cleavage mechanism. Biochemistry 24, 6649-6659.
-
(1995)
Biochemistry
, vol.24
, pp. 6649-6659
-
-
Shu, L.1
Chiou, Y.M.2
Orville, A.M.3
Miller, M.A.4
Lipscomb, J.D.5
Que L., Jr.6
-
27
-
-
0000208617
-
Geometric and electronic structure/function correlations in nonheme iron enzymes
-
& 7 other authors
-
Solomon, E. I., Brunold, T. C., Davis, M. I. & 7 other authors (2000). Geometric and electronic structure/function correlations in nonheme iron enzymes. Chem Rev 100, 235-350.
-
(2000)
Chem. Rev.
, vol.100
, pp. 235-350
-
-
Solomon, E.I.1
Brunold, T.C.2
Davis, M.I.3
-
28
-
-
0033566802
-
Crystal structure of an aromatic ring opening dioxygenase LigAB, a protocatechuate 4,5-dioxygenase, under aerobic conditions
-
Sugimoto, K., Senda, T., Aoshima, H., Masai, E., Fukuda, M. & Mitsui, Y. (1999). Crystal structure of an aromatic ring opening dioxygenase LigAB, a protocatechuate 4,5-dioxygenase, under aerobic conditions. Structure Fold Des 7, 953-965.
-
(1999)
Structure Fold Des.
, vol.7
, pp. 953-965
-
-
Sugimoto, K.1
Senda, T.2
Aoshima, H.3
Masai, E.4
Fukuda, M.5
Mitsui, Y.6
-
29
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
30
-
-
0035114170
-
Crystal structure of substrate free and complex forms of reactivated BphC, an extradiol type ring-cleavage dioxygenase
-
Uragami, Y., Senda, T., Sugimoto, K., Sato, N., Nagarajan, V., Masai, E., Fukuda, M. & Mitsui, Y. (2001). Crystal structure of substrate free and complex forms of reactivated BphC, an extradiol type ring-cleavage dioxygenase. J Inorg Biochem 83, 269-279.
-
(2001)
J. Inorg. Biochem.
, vol.83
, pp. 269-279
-
-
Uragami, Y.1
Senda, T.2
Sugimoto, K.3
Sato, N.4
Nagarajan, V.5
Masai, E.6
Fukuda, M.7
Mitsui, Y.8
-
31
-
-
0032567402
-
Molecular basis for the stabilization and inhibition of 2,3-dihydroxybiphenyl 1,2-dioxygenase by t-butanol
-
Vaillancourt, F. H., Han, S., Fortin, P. D., Bolin, J. T. & Eltis, L. D. (1998). Molecular basis for the stabilization and inhibition of 2,3-dihydroxybiphenyl 1,2-dioxygenase by t-butanol. J Biol Chem 273, 34887-34895.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 34887-34895
-
-
Vaillancourt, F.H.1
Han, S.2
Fortin, P.D.3
Bolin, J.T.4
Eltis, L.D.5
-
32
-
-
0037139492
-
Definitive evidence for monoanionic binding of 2,3-dihydroxybiphenyl to 2,3-dihydroxybiphenyl 1,2-dioxygenase from UV resonance Raman spectroscopy, UV/Vis absorption spectroscopy, and crystallography
-
Vaillancourt, F. H., Barbosa, C. J., Spiro, T. G., Bolin, J. T., Blades, M. W., Turner, R. F. & Eltis, L. D. (2002). Definitive evidence for monoanionic binding of 2,3-dihydroxybiphenyl to 2,3-dihydroxybiphenyl 1,2-dioxygenase from UV resonance Raman spectroscopy, UV/Vis absorption spectroscopy, and crystallography. J Am Chem Soc 124, 2485-2496.
-
(2002)
J. Am. Chem. Soc.
, vol.124
, pp. 2485-2496
-
-
Vaillancourt, F.H.1
Barbosa, C.J.2
Spiro, T.G.3
Bolin, J.T.4
Blades, M.W.5
Turner, R.F.6
Eltis, L.D.7
|