메뉴 건너뛰기




Volumn 378, Issue 3, 2007, Pages 316-330

Complexity and approximation of the minimum recombinant haplotype configuration problem

Author keywords

Approximation; Bounded number; Children; Complexity; Haplotyping; L reduction; Mates; Negative result; Pedigree; Positive result; Recombinant; SNP

Indexed keywords

APPROXIMATION ALGORITHMS; BINARY TREES; COMPUTATIONAL COMPLEXITY; DATA REDUCTION;

EID: 34248224586     PISSN: 03043975     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.tcs.2007.02.036     Document Type: Article
Times cited : (11)

References (21)
  • 1
    • 0037701006 scopus 로고    scopus 로고
    • J. Li, T. Jiang, Efficient rule-based haplotyping algorithm for pedigree data, in: Proc. of the 7th Annual Conference on Research in Computational Molecular Biology, RECOMB'03, 2003, pp. 197-206
  • 2
    • 35248841124 scopus 로고    scopus 로고
    • K. Doi, J. Li, T. Jiang, Minimum recombinant haplotype configuration on tree pedigrees, in: Proc. of the 3rd Annual Workshop on Algorithms in Bioinformatics, WABI'03, 2003, pp. 339-353
  • 3
    • 1242288052 scopus 로고    scopus 로고
    • The complexity of checking consistency of pedigree information and related problems
    • Aceto L., et al. The complexity of checking consistency of pedigree information and related problems. J. Comput. Sci. Technol. 19 1 (2004) 42-59
    • (2004) J. Comput. Sci. Technol. , vol.19 , Issue.1 , pp. 42-59
    • Aceto, L.1
  • 4
    • 0036040281 scopus 로고    scopus 로고
    • S. Khot, On the power of 2-Prover 1-Round Games, in: Proc. of the 34th ACM Symposium on Theory of Computing, STOC'02, 2002, pp. 767-775
  • 5
    • 34848857660 scopus 로고    scopus 로고
    • A. Agarwal, et al., O (sqrt(log) (n)) approximation algorithms for min UnCut, min 2CNF deletion, and directed cut problems, in: Proc. STOC'05 2005, pp. 573-581
  • 7
    • 15944425371 scopus 로고    scopus 로고
    • Where we are hot, they are not
    • Jorde L. Where we are hot, they are not. Science 308 (2005) 60-62
    • (2005) Science , vol.308 , pp. 60-62
    • Jorde, L.1
  • 8
    • 0038715313 scopus 로고    scopus 로고
    • L. Li, J.H. Kim, M.S. Waterman, Haplotype reconstruction from SNP alignment, in: Proc. RECOMB'03, 2003, pp. 207-216
  • 9
    • 0036514657 scopus 로고    scopus 로고
    • Algorithmic strategies for the single nucleotide polymorphism haplotype assembly problem
    • Lippert R., et al. Algorithmic strategies for the single nucleotide polymorphism haplotype assembly problem. Briefings Bioinform. 3 1 (2002) 23-31
    • (2002) Briefings Bioinform. , vol.3 , Issue.1 , pp. 23-31
    • Lippert, R.1
  • 10
    • 0037701054 scopus 로고    scopus 로고
    • E. Eskin, E. Halperin, R.M. Karp, Large scale reconstruction of haplotypes from genotype data, in: Proc. RECOMB'03, 2003, pp. 104-113
  • 11
    • 0029130796 scopus 로고
    • Maximum-likelihood estimation of molecular haplotype frequencies in a diploid population
    • Excoffier L., and Slatkin M. Maximum-likelihood estimation of molecular haplotype frequencies in a diploid population. Mol. Biol. Evol. 12 (1995) 921-927
    • (1995) Mol. Biol. Evol. , vol.12 , pp. 921-927
    • Excoffier, L.1    Slatkin, M.2
  • 12
    • 0035025410 scopus 로고    scopus 로고
    • Transmission/disequilibrium test meets measured haplotype analysis: Family-based association analysis guided by evolution of haplotypes
    • Seltman H., Roeder K., and Devlin B. Transmission/disequilibrium test meets measured haplotype analysis: Family-based association analysis guided by evolution of haplotypes. Amer. J. Hum. Genet. 68 5 (2001) 1250-1263
    • (2001) Amer. J. Hum. Genet. , vol.68 , Issue.5 , pp. 1250-1263
    • Seltman, H.1    Roeder, K.2    Devlin, B.3
  • 13
    • 0041385677 scopus 로고    scopus 로고
    • Transmission/disequilibrium test based on haplotype sharing for tightly linked markers
    • Zhang S., et al. Transmission/disequilibrium test based on haplotype sharing for tightly linked markers. Amer. J. Hum. Genet. 73 3 (2003) 556-579
    • (2003) Amer. J. Hum. Genet. , vol.73 , Issue.3 , pp. 556-579
    • Zhang, S.1
  • 14
    • 2442438861 scopus 로고    scopus 로고
    • J. Li, T. Jiang, An exact solution for finding minimum recombinant haplotype configurations on pedigrees with missing data by integer linear programming, in: Proc. RECOMB'04, 2004, pp. 20-29
  • 15
    • 0033814569 scopus 로고    scopus 로고
    • Zero-recombinant haplotyping: Applications to fine mapping using SNPs
    • O'Connell J.R. Zero-recombinant haplotyping: Applications to fine mapping using SNPs. Genet. Epidemiol. 19 Suppl. 1 (2000) S64-S70
    • (2000) Genet. Epidemiol. , vol.19 , Issue.SUPPL. 1
    • O'Connell, J.R.1
  • 16
    • 0036097372 scopus 로고    scopus 로고
    • Minimum-recombinant haplotyping in pedigrees
    • Qian D., and Beckmann L. Minimum-recombinant haplotyping in pedigrees. Amer. J. Hum. Genet. 70 6 (2002) 1434-1445
    • (2002) Amer. J. Hum. Genet. , vol.70 , Issue.6 , pp. 1434-1445
    • Qian, D.1    Beckmann, L.2
  • 17
    • 79959503826 scopus 로고    scopus 로고
    • The international hapmap project
    • The International HapMap Consortium. The international hapmap project. Nature 426 (2003) 789-796
    • (2003) Nature , vol.426 , pp. 789-796
    • The International HapMap Consortium1
  • 19
    • 0035071957 scopus 로고    scopus 로고
    • A new statistical method for haplotype reconstruction from population data
    • Stephens M., Smith N.J., and Donnelly P. A new statistical method for haplotype reconstruction from population data. Amer. J. Hum. Genet. 68 4 (2001) 978-989
    • (2001) Amer. J. Hum. Genet. , vol.68 , Issue.4 , pp. 978-989
    • Stephens, M.1    Smith, N.J.2    Donnelly, P.3
  • 20
    • 85047875192 scopus 로고    scopus 로고
    • T.J. Schaefer, The complexity of satisfiability problems, in: Proc. of the 10th STOC, 1978, pp. 216-226
  • 21
    • 23844477504 scopus 로고    scopus 로고
    • Computing the minimum recombinant haplotype configuration from incomplete genotype data on a pedigree by integer linear programming
    • Li J., and Jiang T. Computing the minimum recombinant haplotype configuration from incomplete genotype data on a pedigree by integer linear programming. J. Comput. Biol. 12 6 (2005) 719-739
    • (2005) J. Comput. Biol. , vol.12 , Issue.6 , pp. 719-739
    • Li, J.1    Jiang, T.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.