Models for protein binding to calcium oxalate surfaces

Urological Research

Volumn 35, Issue 2, 2007, Pages 63-71

  Gul, Asiya ^a   Rez, Peter ^a  

^a ARIZONA STATE UNIVERSITY   (United States)

Author keywords

Calcium oxalate; Modeling; Phospholipid; Protein; Wedellite; Whewellite

Indexed keywords

4 CARBOXYGLUTAMIC ACID; ASPARTIC ACID; CALCIUM ION; CALCIUM OXALATE; CARBOXYLIC ACID; GLUTAMIC ACID; WHEWELLITE;

ARTICLE; CONTROLLED STUDY; HUMAN; MOLECULAR MODEL; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN DATA BANK; PROTEIN STRUCTURE; THREE DIMENSIONAL IMAGING; UROLITHIASIS;

CALCIUM OXALATE; MODELS, MOLECULAR; PROTEIN BINDING; X-RAY DIFFRACTION;

EID: 34248215710     PISSN: 03005623     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00240-007-0087-3     Document Type: Article

References (32)

1. Drach GW (1992) Urinary lithiasis etiology, diagnosis, and medical management. Campbell's Textbook of Urology, p 2085
2. Grover PK, Ryall RL (1998) Inhibition of calcium oxalate crystal growth and aggregation by prothrombin and its fragments in vitro. Eur J Biochem 263:50
3. Nakagawa Y, Abram V, Kezdy FJ, Kaiser ET, Coe FL (1983) Purification and characterization of the principal inhibitor of calcium oxalate monohydrate crystal growth in human urine. J Biol Chem 258:12594-12600
4. Atmani F, Khan SR (1995) Characterization of uronic acid rich inhibitor of calcium oxalate crystallization isolated from rat urine. Urol Res 23:95
5. Atmani F, Mizon J, Khan SR (1996) Identification of uronic acid rich protein as urinary bikunin, the light chain of inter-α-inhibitor. Eur J Biochem 236:984
6. Wesson JA, Johnson RJ, Mazzali MA, et al (2003) Osteopontin is a critical inhibitor of calcium oxalate crystal formation and retention in renal tubules. J Am Soc Nephrol 14:139-147
7. Qiu SR, Wierzbicki A, Orme CA, et al. (2004) Molecular modulation of calcium oxalate crystallization by osteopontin and citrate. Proc Natl Acad Sci USA 101:1811
8. Addadi L, Weiner S (1985) Interactions between acidic proteins and crystals: stereochemical requirements in biomineralization. Proc Natl Acad Sci USA 82:4110
9. Sheng XX, Jung TS, Wesson JA, Ward MD (2005) Adhesion at calcium oxalate crystal surfaces and the effect of urinary constituents. Proc Natl Acad Sci USA 102:267
10. Lian JB, Prien EL, Glimcher MJ, Gallop PM (1977) The presence of protein bound c-carboxyglutamic acid in calcium-containing renal calculi. J Clin Invest 59:1151
11. Ryall RL, Fleming DE, Grover PK, et al (2000) The hole truth: intracrystalline proteins and calcium oxalate kidney stones. Mol Urol 4:391
12. Dussol B, Geider S, Lilova A, et al (1995) Analysis of the soluble organic matrix of five morphologically different kidney stones. Urol Res 23:45
13. Doyle IR, Ryall RL, Marshall VR (1993) Inclusion of proteins into calcium oxalate crystals precipitated from human urine: a highly selective phenomenon. Clin Chem 37:1589
14. Nakagawa Y, Ahmed MA, Hall SL, et al (1987) Isolation from human calcium oxalate renal stones of nephrocalcin, a glycoprotein inhibitor of calcium oxalate crystal growth. J Clin Invest 79:1782
15. Atmani F, Glenton PA, Khan SR (1998) Identification of proteins extracted from calcium oxalate and calcium phosphate crystals induced in the urine of healthy and stone forming subjects. Urol Res 26:201
16. Warpehoski M, Buscemi PJ, Osborn DC, et al (1981) Distribution of organic matrix in calcium oxalate renal calculi calcif. Tissue Int 33:211
17. Berman HM, Westbrook J, Feng Z, et al (2000) The protein data bank. Nucleic Acids Res 28:235-242
18. Khoul H (2003) Personal Communication
19. Ivaska KK, Hellman J, et al (2003) Identification of novel proteolytic forms of osteocalcin in human urine. Biochem Biophys Res Commun 306:973
20. Hoang QG, Sichert F, Howard AJ, Yang DSG (2003) Bone recognition mechanism of porcine osteocalcin from crystal structure. Nature 425:977
21. Tazzoli V, Domeneghetti C (1980) The crystal structures of whewellite and weddellite: re-examination and comparison. Am Mineral 65:327
22. Humphrey W, Dalke A, Schulten K (1996) VMD: visual molecular dynamics. J Mol Graph 14:33
23. Walton RC, Kavanagh JP, Heywood BR, Rao PN (2005) The association of different urinary proteins with calcium oxalate hydromorphs. Evidence for non-specific interactions. Biochim et Biophys Acta 1723:175
24. Ryall RL, Chauvet MC, Grover PK (2005) Intracrystalline proteins and urolithiasis: a comparison of the protein content and ultrastructure of urinary calcium oxalate monohydrate and dihydrate crystals. BJU Int 96:654
25. Gray JJ (2004) The interaction of proteins with solid surfaces. Curr Opin Struct Biol 14:110
26. Lu JR, Su TJ, Thirtle PN (1998) The denaturation of lysozyme layers adsorbed at the hydrophobic solid/liquid surface studied by neutron reflection. J Colloid Interface Sci 206:212
27. Yu CH, Norman MA, Newton SQ, et al (2000) Molecular dynamics simulations of the adsorption of proteins on clay mineral surfaces. J Mol Struct 556:95
28. Hanein D, Geiger B, Adaddi L (1993) Fibronection adsorption to surfaces of hydrated crystals. An analysis of the importance of bound water in protein-substrate interactions. Langmuir 9:1058
29. Yongli C, Xiufang Z Yandao G, et al (1999) Conformational changes of fibrinogen adsorption onto hyroxyapatite and titanium oxide nanoparticles. J Colloid Interface Sci 214:38
30. Baugh L, Vogel V (2004) Structural changes of fibronection adsorbed to model surfaces probed by flourescence resonance energy transfer. J Biomed Mater Res A 69:525
31. Tama F, Sanejouand YH (2001) Conformational change of proteins arising from normal mode calculations. Protein Eng 14:1-6
32. Rader AJ, Hespenheide BM, Kuhn LA, Thorpe MF (2002) Protein unfolding: rigidity lost. Proc Natl Acad Sci USA 99:3540