The first complete cDNA sequence of the hemocyanin from a bivalve, the protobranch Nucula nucleus

Journal of Molecular Evolution

Volumn 64, Issue 5, 2007, Pages 500-510

  Bergmann, Sandra ^a   Markl, Jürgen ^a   Lieb, Bernhard ^a  

^a JOHANNES GUTENBERG UNIVERSITY   (Germany)

Author keywords

Bivalve evolution; cDNA sequence; Hemocyanin; Nucula nucleus; Protein structure

Indexed keywords

COMPLEMENTARY DNA; HEMOCYANIN;

3' UNTRANSLATED REGION; 5' UNTRANSLATED REGION; ANIMAL TISSUE; ARTICLE; BIVALVE; CARBOXY TERMINAL SEQUENCE; CEPHALOPOD; CONTROLLED STUDY; DNA SEQUENCE; GASTROPOD; MOLECULAR CLOCK; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; OXYGEN AFFINITY; PARALOGY; PROTEIN GLYCOSYLATION; PROTEIN VARIANT; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS;

AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; BIVALVIA; DNA, COMPLEMENTARY; GENE EXPRESSION REGULATION; HEMOCYANIN; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PHYLOGENY; PROTEIN CONFORMATION;

BIVALVIA; CEPHALOPODA; GASTROPODA; NUCULA NUCLEUS;

EID: 34248195015     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00239-006-0036-8     Document Type: Article

References (59)

1. Adamkevicz SL, Harasewych MG, Blake J, Saudek D, Bult CJ (1997) A molecular phylogeny of the Bivalve mollusks. Mol Biol Evol 14:619-629
2. Albrecht U, Keller H, Gebauer W, Markl J (2001) Rhogocytes (pore cells) as the site of hemocyanin biosynthesis in the marine gastropod Haliotis tuberculata. Cell Tissue Res 304:455-462
3. Altenhein B, Markl J, Lieb B (2002) Gene structure and hemocyanin isoform HtH2 from the mollusc Haliotis tuberculata indicate early and late intron hot spots. Gene 301:53-60
4. Bause E (1983) Structural requirements of N-glycosylation of proteins. Studies with proline peptides as conformational probes. Biochem J 209:331-336
5. Benton MJ (1993) The fossil record 2. Chapman & Hall, London, pp 125-270
6. Bergmann S, Lieb B, Ruth P, Markl J (2006) The hemocyanin from a living fossil, the cephalopod Nautilus pompilius: protein structure, gene organization, and evolution. J Mol Evol 62:362-374
7. Campbell DC, Hoekstra KJ, Carter JG (1998) 18S ribosomal DNA and evolutionary relationships within the Bivalvia. In: Johnston PA, Haggart JW (eds) Bivalves: an eon of evolution - Palaeobiological studies honouring Norman D. Newell. University of Calgary Press, Calgary, pp 1-45
8. Chomczynski P, Sacchi N (1987) Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal Biochem 162:156-159
9. Cope JCW (2000) A new look at early bivalve phylogeny. In: Harper EM, Taylor JD, Crame JA (eds) Evolutionary Biology of the Bivalvia. Vol 177. Special Publication of the Geological Society, London, pp 81-95
10. Cuff ME, Miller KI, van Holde KE, Hendrickson WA (1998) Crystal structure of a functional unit from Octopus hemocyanin. J Mol Biol 278:855-870
11. Declerq L, Witters R, Preaux G (1990) Partial sequence determination of Sepia officinalis hemocyanin via cDNA. In: Preaux G, Lontie R (eds) Invertebrate dioxygen carriers. Leuven University Press, euven, Belgium, pp 131-134
12. Felsenstein J (2001) PHYLIP (Phylogeny Inference Package), version 3.6alpha2. Distributed by the author, Department of Genetics University of Washington, Seattle
13. Gebauer W, Harris JR, Heid H, Stiling M, Hillenbrand R, Sohngen S, Wegener-Strake A, Markl J (1994) Quaternary structure, subunits and domain patterns of two dicrete forms of keyhole limpet hemocyanin: KLH1 and KLH2. Zoology 98:51-68
14. Gebauer W, Stoeva S, Voelter W, Danese E, Salvato B, Beltramini M, Markl J (1999) Hemocyanin subunit organization of the gastropod Rapana thomasiana. Arch Biochem Biophys 372:128-134
15. Giribet G, Wheeler W (2002) On bivalve phylogeny: a high-level analysis of the Bivalvia (Mollusca) based on combined morphology and DNA sequence data. Invert Biol 121:271-324
16. Gustafsen RG, Reid RGB (1986) Development of the pericalymma larva of Solemya reidi Bernard 1980. (Bivalvia, Cryptodonta, Solemyidae) as revealed by light and electron microscopy. Mar Biol 93:411-427
17. Gustafsen RG, Reid RGB (1988) Larval and post-larval morphogenesis in the gutless protobranch bivalve Solemya reidi (Cryptodonta, Solemyidae). Mar Biol 97:373-387
18. Harris JR, Home RW (1991) Negative staining. In: Harris (ed) Electron microscopy in biology. IRL Press, Oxford, pp 203-228
19. Harris JR, Markl J (2000) Keyhole limpet hemocyanin: molecular structure of a potent marine immunoactivator. A review. Eur Urol 37:24-33
20. Herskovits TT, Hamilton MG (1991) Higher order assemblies of molluscan hemocyanins. Comp Biochem Physiol B 99:19-34
21. Huelsenbeck JP, Ronquist F (2001) MRBAYES: Bayesian inference of phylogenetic trees. ioinformatics 17:754-755
22. Idakieva K, Severov S, Svendsen I, Genov N, Stoeva S, Beltramini M, Tognon G, Di Muro P, Salvato B (1993) Structural properties of Rapana thomasiana grosse hemocyanin: isolation, characterization and N-terminal amino acid sequence of two different dissociation products. Comp Biochem Physiol B 106:53-59
23. Keen AM (1969) Family Nuculidae Gray 1824. In: Moore RC, Teichert C (eds) Treatise on invertebrate paleontology. Part N. Mollusca 6. Vol 1. Bivalvia. Geological Society of America, Boulder, CO/University of Kansas Press, Lawrence, pp N230-N231
24. Kenchington EL, Roddick DL, Singh RK, Bird CJ (1994) Analysis of the small-subunit rRNA gene sequences from six families of molluscs. J Mar Biotechnol 1:215-217
25. Klabunde T, Eicken C, Sacchettini JC, Krebs B (1998) Crystal structure of a plant catechol oxidase containing a discopper center. Nat Struct Biol 5:1084-1090
26. Kroll J (1973) Crossed-line immunoelectrophoresis. Scand J Immunol 2:79-81
27. Laemmli UK (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227:680-685
28. Lambert O, Taveau JC, Boisset N, Lamy JN (1995) Three-dimensional reconstruction of the hemocyanin of the protobranch bivalve mollusc Nucula hanleyi from frozen-hydrated specimens. Arch Biochem Biophys 319:231-243
29. Lamy J, Gielens C, Lambert O, Taveau JC, Motta G, Loncke P, De Geest N, Preaux G, Lamy J (1993) Further approaches to the quaternary structure of Octopus hemocyanin: a model based on immunoelectron microscopy and image processing. Arch Biochem Biophys 305:17-29
30. Lang WH, van Holde KE (1991) Cloning and sequencing of Octopus dofleini hemocyanin cDNA: derived sequences of functional units Ode and Odf. Proc Natl Acad Sci USA 88:244-248
31. Lieb B, Markl J (2004) Evolution of molluscan hemocyanins as deduced from DNA sequencing. Micron 35:117-119
32. Lieb B, Altenhein B, Markl J (2000) The sequence of a gastropod hemocyanin (HtHl from Haliotis tuberculatd). J Biol Chem 275:5675-5681
33. Lieb B, Altenhein B, Markl J, Vincent A, van Olden E, van Holde KE, Miller KI (2001) Structures of two molluscan hemocyanin genes: significance for gene evolution. Proc Natl Acad Sci USA 98:4546-4551
34. Lieb B, Boisguerin V, Gebauer W, Markl J (2004) cDNA sequence, protein structure, and evolution of the single hemocyanin from Aplysia californica, an ophistobranch gastropod. J Mol Evol 59:1-10
35. Mangum CP, Miller KI, Scott JL, van Holde KE, Morse MP (1987) Bivalve hemocyanin structural, functional, and phylogenetic relationships. J Biol Bull 173:205-221
36. Markl J, Savel-Niemann A, Wegener-Strake A, Süling M, Schneider A, Gebauer W, Harris R (1991) The role of two distinct subunit types in the architecture of keyhole limpet hemocyanin (KLH). Naturwissenschaften 78:512-514
37. Markl J, Lieb B, Gebauer W, Altenhein B, Meissner U, Harris JR (2001) Marine tumor vaccine carriers: structure of the molluscan hemocyanins KLH and HtH. J Cancer Res Clin Oncol 127:R3-R9
38. Meissner U, Dube P, Harris JR, Stark H, Markl J (2000) Structure of a molluscan hemocyanin didecamer (HtHl irom Hanotis tuberculata) at 12 Å resolution by cryoelectron microscopy. J Mol Biol 298:2l-34
39. Miller KI, Schabtach E, van Holde KE (1990) Arrangement of subunits and domains within the Octopus dofleini hemocyanin molecule. Proc Natl Acad Sci USA 87:1496-1500
40. Miller KI, Cuff ME, Lang WF, Varga-Weisz P, Field KG, van Holde KE (1998) Sequence of the Octopus dofleini hemocyanin subunit: structural and evolutionary implications. J Mol Biol 278:827-842
41. Morse MP, Meyhofer E, Otto JJ, Kuzirian AM (1986) Hemocyanin respiratory pigment in bivalve mollusks. Science 231:1302-1304
42. Morton BS (1996) The evolutionary history of the Bivalvia. In: Taylor JD (ed) Origin and evolutionary radiation of the Mollusca. Oxford University Press, Oxford, pp 337-359
43. Nicholas KB, Nicholas HB Jr (1997) GeneDoc: analysis and visualization of genetic variation. Distributed by the authors
44. Perbandt M, Guthohrlein EW, Rypniewski W, Idakieva K, Stoeva S, Voelter W, Genov N, Betzel C (2003) The structure of a functional unit from the wall of a gastropod hemocyanin offers a possible mechanism for cooperativity. Biochemistry 42:6341-6346
45. Purchon RD (1956) The stomach in the Protobranchia and Septibranchia (Lamellibranchia). Proc Zool Soc London 127:511-525
46. Ruth P, Schipp R, Kllissendorf B (1988) Cytomorphology and copper content of the basal cells in the midgut-gland of Nautilus (Cephalopoda, Tetrabranchiata). A contribution to the localization of hemocyanin synthesis. Zoomorphology 108:1-11
47. Salvato B, Santamaria M, Beltramini M, Alzuet G, Casella L (1998) The enzymatic properties of Octopus vulgaris hemocyanin: o-diphenol oxidase activity. Biochemistry 37:14065-14077
48. Sambrook J, Russel DW (2001) Molecular cloning. A laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
49. Sminia T (1977) Haemocyanin-producing cells in gastropod molluscs. In: Bannister JV (ed) Structure ancLfunction of haemocyanin. Springer, Berlin, pp 279-288
50. Söhngen SM, Stahlmann A, Harris JR, Muller SA, Engel A, Markl J (1997) Mass determination subunit organization and control of oligomerization states of keyhole limpet hemocyanin (KLH). Eur J Biochem 248:602-614
51. Stasek CR (1972) The molluscan framework. In: Florkin M, Scheer BT (eds) Chemical zoology. Vol 7. Mollusca. Academic Press, New York, pp 1-44
52. Tajima F (1993) Simple methods for testing molecular clock hypothesis. Genetics 135:599-607
53. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24:4876-4882
54. Topham R, Tesh S, Westcott A, Cole G, Mercatante D, Kaufman G, Bonaventura C (1999) Disulfide bond reduction: A powerful, chemical probe for the study of structure-function relationships in the hemocyanins. Arch Biochem Biophys 369:261-266
55. van Gelder CWG, Flurkey WH, Wichers HJ (1997) Sequence and structural features of plant and fungal tyrosinases. Phytochemistry 45:1309-1323
56. van Holde KE, Miller KI (1995) Hemocyanins. Adv Protein Chem 47:1-81
57. Waller TR (1998) Origin of the molluscan class Bivalvia and a phylogeny of major groups. In: Johnston PA, Haggart JW (eds) Bivalves: an eon of evolution - Palaeobiological studies honouring Norman D. Newell. University of Calgary Press, Calgary, pp 1-45
58. Weeke B (1973) Crossed immunoelectrophoresis. Scand J Immunol 2:47-56
59. Winnepenninckx B, Backeljau T, De Wachter R (1994) Small ribosomal subunit RNA and the phylogeny of Mollusca. Nautilus 2:98-110