Alkalibacillus filiformis sp. nov., isolated from a mineral pool in Campania, Italy

International Journal of Systematic and Evolutionary Microbiology

Volumn 55, Issue 6, 2005, Pages 2395-2399

  Romano, Ida ^a   Lama, Licia ^a   Nicolaus, Barbara ^a   Gambacorta, Agata ^a   Giordano, Assunta ^a  

^a Instituto de Chimica Biomelecolare   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

AMPICILLIN; BACTERIAL DNA; BETAINE; CARDIOLIPIN; CHLORAMPHENICOL; DIAMINOPIMELIC ACID; ERYTHROMYCIN; FATTY ACID; FUSIDIC ACID; GLUTAMIC ACID; LIPID; MENAQUINONE; MINERAL; NOVOBIOCIN; PENICILLIN G; PHOSPHATIDYLGLYCEROL; RNA 16S; VANCOMYCIN;

ALKALIBACILLUS FILIFORMIS; ANTIBIOTIC SENSITIVITY; ARTICLE; BACTERIAL CELL WALL; BACTERIAL STRAIN; BACTERIUM ISOLATION; CHEMOTAXONOMY; DNA DNA HYBRIDIZATION; FIRMICUTES; GENE SEQUENCE; GENOTYPE; GRAM POSITIVE BACTERIUM; HALOPHILIC BACTERIUM; ITALY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; RNA GENE; SWIMMING POOL;

BACILLACEAE; BASE COMPOSITION; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; FRESH WATER; ITALY; MINERALS; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA;

BACTERIA (MICROORGANISMS); FIRMICUTES; POSIBACTERIA;

EID: 27844502177     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.63864-0     Document Type: Article

References (41)

1. Arahal, D. R. & Ventosa, A. (2002). Moderately halophilic and halotolerant species of Bacillus and related genera. In Applications and Systematics of Bacillus and Relatives, pp. 83-99. Edited by R. C. W. Berkeley, M. Heyndrickx, N. Logan & P. de Vos. Oxford: Blackwell.
2. Arahal, D. R., Márquez, M. C., Volcani, B. E., Schleifer, K. H. & Ventosa, A. (2000). Reclassification of Bacillus marismortui as Salicibacillus marismortui comb. nov. Int J Syst Evol Microbiol 50, 1501-1503.
3. Chenna, R., Sugawara, H., Koike, T., Lopez, R., Gibson, T. J., Higgins, D. G. & Thompson, J. D. (2003). Multiple sequence alignment with the Clustal series of programs. Nucleic Acids Res 31, 3497-3500.
4. De Ley, J., Cattoir, H. & Reynaerts, A. (1970). The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12, 133-142.
5. DSMZ (2001). Catalogue of Strains, 7th edn. Braunschweig: DSMZ. http://www.dsmz.de/species/murein.htm
6. Dussault, H. P. (1955). An improved technique for staining red halophilic bacteria. J Bacteriol 70, 484-485.
7. Escara, J. F. & Hutton, J. R. (1980). Thermal stability and renaturation of DNA in dimethyl sulfoxide solutions: acceleration of the renaturation rate. Biopolymers 19, 1315-1327.
8. Felsenstein, J. (2004). PHYLIP (Phylogeny Inference Package), version 3.6. Seattle: University of Washington.
9. Fritze, D. (1996). Bacillus haloalkaliphilus sp. nov. Int J Syst Bacteriol 46, 98-101.
10. Halebian, S., Harris, B., Finegold, S. M. & Rolfe, R. D. (1981). Rapid method that aids in distinguishing gram-positive from gram-negative anaerobic bacteria. J Clin Microbiol 13, 444-448.
11. Hao, M. V., Kocur, M. & Komagata, K. (1984). Marinococcus gen. nov., a new genus for motile cocci with meso-diaminopimelic acid in the cell wall; and Marinococcus albus sp. nov. and Marinococcus halophilus (Novitsky and Kushner) comb. nov. J Gen Appl Microbiol 30, 449-459.
12. Heyrman, J., Logan, N. A., Busse, H.-J., Balcaen, A., Lebbe, L., Rodriguez-Diaz, M., Swings, J. & De Vos, P. (2003). Virgibacillus carmonensis sp. nov., Virgibacillus necropolis sp. nov. and Virgibacillus picturae sp. nov., three novel species isolated from deteriorated mural paintings, transfer of the species of the genus Salibacillus to Virgibacillus, as Virgibacillus marismortui comb. nov. and Virgibacillus salexigens comb. nov., and emended description of the genus Virgibacillus. Int J Syst Evol Microbiol 53, 501-511.
13. Huss, V. A. R., Festl, H. & Schleifer, K.-H. (1983). Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 4, 184-192.
14. Jahnke, K.-D. (1992). Basic computer program for evaluation of spectroscopic DNA renaturation data from GILFORD system 2600 spectrometer on a PC/XT/AT type personal computer. J Microbiol Methods 15, 61-73.
15. Jeon, C. O., Lim, J.-M., Lee, J.-M., Xu, L.-H., Jiang, C.-L. & Kim, C.-J. (2005). Reclassification of Bacillus haloalkaliphilus Fritze 1996 as Alkalibacillus haloalkaliphilus gen. nov., comb. nov. and the description of Alkalibacillus salilacus sp. nov., a novel halophilic bacterium isolated from a salt lake in China. Int J Syst Evol Microbiol 55, 1891-1896.
16. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, pp. 21-132. Edited by H. N. Munro. New York: Academic Press.
17. Lu, J., Nogi, Y. & Takami, H. (2001). Oceanobacillus iheyensis gen. nov. sp. nov., a deep-sea extremely halotolerant and alkaliphilic species isolated from a depth of 1050 in on the Iheya Ridge. FEMS Microbiol Lett 205, 291-297.
18. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
19. Nielsen, P., Fritze, D. & Priest, F. G. (1995). Phenetic diversity of alkaliphilic Bacillus strains: proposal for nine new species. Microbiology 141, 1745-1761.
20. Oren, A. & Galinski, E. A. (1994). Hydrolysis of N′-benzoyl-arginine-p-nitroanilide stereoisomers as a phenotypic test: a study of Gram-positive halotolerant bacteria. Syst Appl Microbiol 17, 7-10.
21. Rhuland, L. E., Work, E., Denman, R. F. & Hoare, D. S. (1955). The behavior of the isomers of α,ε-diaminopimelic acid on paper chromatograms. J Am Chem Soc 77, 4844-4846.
22. Romano, I., Manca, M. C., Lama, L., Nicolaus, B. & Gambacorta, A. (1993). Method for antibiotic assay on Sulfolobales. Biotechnol Tech 7, 439-440.
23. Romano, I., Nicolaus, B., Lama, L., Manca, M. C. & Gambacorta, A. (1996). Characterization of a haloalkaliphilic strictly aerobic bacterium, isolated from Pantelleria Island. Syst Appl Microbiol 19, 326-333.
24. Romano, I., Nicolaus, B., Lama, L., Trabasso, D., Caracciolo, G. & Gambacorta, A. (2001). Accumulation of osmoprotectants and lipid pattern modulation in response to growth conditions by Halomonas pantelleriense. Syst Appl Microbiol 24, 342-352.
25. Romano, I., Giordano, A., Lama, L., Nicolaus, B. & Gambacorta, A. (2003). Planococcus rifietensis sp. nov, isolated from algal mat collected from a sulfurous spring in Campania (Italy). Syst Appl Microbiol 26, 357-366.
26. Romano, I., Lama, L., Nicolaus, B., Gambacorta, A. & Giordano, A. (2005). Bacillus saliphilus sp. nov., isolated from a mineral pool in Campania, Italy. Int J Syst Evol Microbiol 55, 159-163.
27. Rossellò-Mora, R. & Amman, R. (2001). The species concept for prokaryotes. FEMS Microbiol Rev 25, 39-67.
28. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
29. Schleifer, K. H. (1985). Analysis of the chemical composition and primary structure of murein. Methods Microbiol 18, 123-156.
30. Schleifer, K. H. & Kandler, O. (1972). Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol Rev 36, 407-477.
31. Schlesner, H., Lawson, P. A., Collins, M. C., Weiss, N., Wehmeyer, U., Völker, H. & Thomm, M. (2001). Filobacillus milensis gen. nov., sp. nov., a new halophilic spore-forming bacterium with Orn-D-Glu-type peptidoglycan. Int J Syst Evol Microbiol 51, 425-431.
32. Spring, S., Ludwig, W., Marquez, M. C., Ventosa, A. & Schleifer, K.-H. (1996). Halobacillus gen. nov., with description of Halobacillus litoralis sp. nov. and Halobacillus trueperi sp. nov., and transfer of Sporosarcina halophila to Halobacillus halophilus comb. nov. Int J Syst Bacteriol 46, 492-496.
33. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
34. Stackebrandt, E., Frederiksen, W., Garrity, G. M. & 10 other authors (2002). Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology. Int J Syst Evol Microbiol 52, 1043-1047.
35. Staneck, J. L. & Roberts, G. D. (1974). Simplified approach to identification of aerobic actinomycetes by thin-layer chromatography. Appl Microbiol 28, 226-231.
36. Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reverse-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125-128.
37. Wainø, M., Tindall, B. J., Schumann, P. & Ingvorsen, K. (1999). Gracilibacillus gen. nov., with description of Gracilibacillus halotolerans gen. nov., sp. nov.; transfer of Bacillus dipsosauri to Gracilibacillus dipsosauri comb. nov., and Bacillus salexigens to the genus Salibacillus gen. nov., as Salibacillus salexigens comb. nov. Int J Syst Evol Microbiol 49, 821-831.
38. Wayne, L. G., Brenner, D. J., Colwell, R. R. & 9 other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
39. Yoon, H.-J., Oh, T.-K. & Park, Y.-H. (2004). Transfer of Bacillus halodenitrificans Denariaz et al. 1989 to the genus Virgibacillus as Virgibacillus halodenitrificans comb. nov. Int J Syst Evol Microbiol 54, 2163-2167.
40. Yumoto, I., Hirota, K., Goto, T., Nodasaka, Y. & Nakajima, K. (2005). Bacillus oshimensis sp. nov., a moderately halophilic, non-motile alkaliphile. Int J Syst Evol Microbiol 55, 907-911.
41. Zhilina, T. N., Garnova, E. S., Tourova, T. P., Kostrikina, N. A. & Zavarzin, G. A. (2001). Amphibacillus fermentum sp. nov. and Amphibacillus tropicus sp. nov., new alkaliphilic, facultatively anaerobic, saccharolytic bacilli from Lake Magadi. Mikrobiologiia 70, 825-837 (in Russian).