-
1
-
-
28144450371
-
Discovering novel biology by in silico archaeology
-
10.1038/nrmicro1268 16175172
-
Ettema TJ de Vos WM van der Oost J Discovering novel biology by in silico archaeology Nat Rev Microbiol 2005, 3:859-69 10.1038/nrmicro1268 16175172
-
(2005)
Nat Rev Microbiol
, vol.3
, pp. 859-869
-
-
Ettema, T.J.1
de Vos, W.M.2
van der Oost, J.3
-
2
-
-
0027474760
-
The structure of a thermally stable 3-phosphoglycerate kinase and a comparison with its mesophilic equivalent
-
10.1002/prot.340150306 8456097
-
Davies GJ Gamblin SJ Littlechild JA Watson HC The structure of a thermally stable 3-phosphoglycerate kinase and a comparison with its mesophilic equivalent Proteins 1993, 15:283-9 10.1002/prot.340150306 8456097
-
(1993)
Proteins
, vol.15
, pp. 283-289
-
-
Davies, G.J.1
Gamblin, S.J.2
Littlechild, J.A.3
Watson, H.C.4
-
3
-
-
13244249836
-
The structure of Pyrococcus furiosus glutamate dehydrogenase reveals a key role for ion-pair networks in maintaining enzyme stability at extreme temperatures
-
10.1016/S0969-2126(01)00251-9
-
Yip KS Stillman TJ Britton KL Artymiuk PJ Baker PJ Sedelnikova SE Engel PC Pasquo A Chiaraluce R Consalvi V The structure of Pyrococcus furiosus glutamate dehydrogenase reveals a key role for ion-pair networks in maintaining enzyme stability at extreme temperatures Structure 1995 3 1147 58 10.1016/S0969-2126(01)00251-9 8591026
-
(1995)
Structure
, vol.3
, pp. 1147-1158
-
-
Yip, K.S.1
Stillman, T.J.2
Britton, K.L.3
Artymiuk, P.J.4
Baker, P.J.5
Sedelnikova, S.E.6
Engel, P.C.7
Pasquo, A.8
Chiaraluce, R.9
Consalvi, V.10
-
4
-
-
0029993239
-
Insights into the molecular basis of thermal stability from the structure determination of Pyrococcus furiosus glutamate dehydrogenase
-
10.1111/j.1574-6976.1996.tb00230.x 8639325
-
Rice DW Yip KS Stillman TJ Britton KL Fuentes A Connerton I Pasquo A Scandura R Engel PC Insights into the molecular basis of thermal stability from the structure determination of Pyrococcus furiosus glutamate dehydrogenase FEMS Microbiol Rev 1996, 18:105-17. 10.1111/ j.1574-6976.1996.tb00230.x 8639325
-
(1996)
FEMS Microbiol Rev
, vol.18
, pp. 105-117
-
-
Rice, D.W.1
Yip, K.S.2
Stillman, T.J.3
Britton, K.L.4
Fuentes, A.5
Connerton, I.6
Pasquo, A.7
Scandura, R.8
Engel, P.C.9
-
5
-
-
0030921675
-
Structural basis of the properties of an industrially relevant thermophilic xylanase
-
10.1002/(SICI)1097-0134(199709)29:1<77::AID-PROT6>3.0.CO;2-C 9294868
-
Harris GW Pickersgill RW Connerton I Debeire P Touzel JP Breton C Perez S Structural basis of the properties of an industrially relevant thermophilic xylanase Proteins 1997, 29:77-86. 10.1002/ (SICI)1097-0134(199709)29:1<77::AID-PROT6>3.0.CO;2-C 9294868
-
(1997)
Proteins
, vol.29
, pp. 77-86
-
-
Harris, G.W.1
Pickersgill, R.W.2
Connerton, I.3
Debeire, P.4
Touzel, J.P.5
Breton, C.6
Perez, S.7
-
6
-
-
0031567156
-
Crystal structures of Escherichia coli and Salmonella typhimurium 3-isopropylmalate dehydrogenase and comparison with their thermophilic counterpart from Thermus thermophilus
-
10.1006/jmbi.1996.0797 9086278
-
Wallon G Kryger G Lovett ST Oshima T Ringe D Petsko GA Crystal structures of Escherichia coli and Salmonella typhimurium 3-isopropylmalate dehydrogenase and comparison with their thermophilic counterpart from Thermus thermophilus J Mol Biol 1997, 266:1016-31. 10.1006/jmbi.1996.0797 9086278
-
(1997)
J Mol Biol
, vol.266
, pp. 1016-1031
-
-
Wallon, G.1
Kryger, G.2
Lovett, S.T.3
Oshima, T.4
Ringe, D.5
Petsko, G.A.6
-
7
-
-
0030741375
-
The crystal structure of citrate synthase from the hyperthermophilic archaeon pyrococcus furiosus at 1.9 A resolution
-
10.1021/bi9705321 9254593
-
Russell RJ Ferguson JM Hough DW Danson MJ Taylor GL The crystal structure of citrate synthase from the hyperthermophilic archaeon pyrococcus furiosus at 1.9 A resolution Biochemistry 1997, 36:9983-94. 10.1021/bi9705321 9254593
-
(1997)
Biochemistry
, vol.36
, pp. 9983-9994
-
-
Russell, R.J.1
Ferguson, J.M.2
Hough, D.W.3
Danson, M.J.4
Taylor, G.L.5
-
8
-
-
0027462173
-
Principles of protein stability derived from protein engineering experiments
-
10.1016/0959-440X(93)90205-Y
-
Fersht AR Serrano L Principles of protein stability derived from protein engineering experiments Current Opinion in Structural Biology 1993, 3:75-83. 10.1016/0959-440X(93)90205-Y
-
(1993)
Current Opinion in Structural Biology
, vol.3
, pp. 75-83
-
-
Fersht, A.R.1
Serrano, L.2
-
10
-
-
0034620528
-
Rational modification of protein stability by the mutation of charged surface residues
-
10.1021/bi992091m 10653630
-
Spector S Wang M Carp SA Robblee J Hendsch ZS Fairman R Tidor B Raleigh DP Rational modification of protein stability by the mutation of charged surface residues Biochemistry 2000, 39:872-9. 10.1021/bi992091m 10653630
-
(2000)
Biochemistry
, vol.39
, pp. 872-879
-
-
Spector, S.1
Wang, M.2
Carp, S.A.3
Robblee, J.4
Hendsch, Z.S.5
Fairman, R.6
Tidor, B.7
Raleigh, D.P.8
-
11
-
-
3142632218
-
Protein thermostability: Structure-based difference of amino acid between thermophilic and mesophilic proteins
-
10.1016/j.jbiotec.2004.01.018 15246663
-
Pack SP Yoo YJ Protein thermostability: Structure-based difference of amino acid between thermophilic and mesophilic proteins J Biotechnol 2004, 111:269-77. 10.1016/j.jbiotec.2004.01.018 15246663
-
(2004)
J Biotechnol
, vol.111
, pp. 269-277
-
-
Pack, S.P.1
Yoo, Y.J.2
-
12
-
-
0034017055
-
Factors enhancing protein thermostability
-
10.1093/protein/13.3.179 10775659
-
Kumar S Tsai CJ Nussinov R Factors enhancing protein thermostability Protein Eng 2000, 13:179-91. 10.1093/protein/13.3.179 10775659
-
(2000)
Protein Eng
, vol.13
, pp. 179-191
-
-
Kumar, S.1
Tsai, C.J.2
Nussinov, R.3
-
13
-
-
32044454841
-
Effective factors in thermostability of thermophilic proteins
-
10.1016/j.bpc.2005.09.018 16253416
-
Sadeghi M Naderi-Manesh H Zarrabi M Ranjbar B Effective factors in thermostability of thermophilic proteins Biophys Chem 2006, 119:256-70. 10.1016/j.bpc.2005.09.018 16253416
-
(2006)
Biophys Chem
, vol.119
, pp. 256-270
-
-
Sadeghi, M.1
Naderi-Manesh, H.2
Zarrabi, M.3
Ranjbar, B.4
-
14
-
-
0033616712
-
Thermal adaptation analyzed by comparison of protein sequences from mesophilic and extremely thermophilic Methanococcus species
-
22336 10097079 10.1073/pnas.96.7.3578
-
Haney PJ Badger JH Buldak GL Reich CI Woese CR Olsen GJ Thermal adaptation analyzed by comparison of protein sequences from mesophilic and extremely thermophilic Methanococcus species Proc Natl Acad Sci USA 1999, 96:3578-83. 22336 10097079 10.1073/pnas.96.7.3578
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 3578-3583
-
-
Haney, P.J.1
Badger, J.H.2
Buldak, G.L.3
Reich, C.I.4
Woese, C.R.5
Olsen, G.J.6
-
15
-
-
0034677790
-
Elucidation of determinants of protein stability through genome sequence analysis
-
10.1016/S0014-5793(00)01267-9 10722847
-
Chakravarty S Varadarajan R Elucidation of determinants of protein stability through genome sequence analysis FEBS Lett 2000, 470:65-9. 10.1016/S0014-5793(00)01267-9 10722847
-
(2000)
FEBS Lett
, vol.470
, pp. 65-69
-
-
Chakravarty, S.1
Varadarajan, R.2
-
16
-
-
0034191064
-
The stability of thermophilic proteins: A study based on comprehensive genome comparison
-
11793224
-
Das R Gerstein M The stability of thermophilic proteins: A study based on comprehensive genome comparison Funct Integr Genomics 2000, 1:76-88. 11793224
-
(2000)
Funct Integr Genomics
, vol.1
, pp. 76-88
-
-
Das, R.1
Gerstein, M.2
-
17
-
-
0034693042
-
Structural and genomic correlates of hyperthermostability
-
10.1074/jbc.C000497200 10940293
-
Cambillau C Claverie JM Structural and genomic correlates of hyperthermostability J Biol Chem 2000, 275:32383-6. 10.1074/ jbc.C000497200 10940293
-
(2000)
J Biol Chem
, vol.275
, pp. 32383-32386
-
-
Cambillau, C.1
Claverie, J.M.2
-
18
-
-
0037172796
-
Elucidation of factors responsible for enhanced thermal stability of proteins: A structural genomics based study
-
10.1021/bi025523t 12069608
-
Chakravarty S Varadarajan R Elucidation of factors responsible for enhanced thermal stability of proteins: A structural genomics based study Biochemistry 2002, 41:8152-61. 10.1021/bi025523t 12069608
-
(2002)
Biochemistry
, vol.41
, pp. 8152-8161
-
-
Chakravarty, S.1
Varadarajan, R.2
-
19
-
-
0031766401
-
HOMSTRAD: A database of protein structure alignments for homologous families
-
9828015
-
Mizuguchi K Deane CM Blundell TL Overington JP HOMSTRAD: A database of protein structure alignments for homologous families Protein Sci 1998, 7:2469-71. 9828015
-
(1998)
Protein Sci
, vol.7
, pp. 2469-2471
-
-
Mizuguchi, K.1
Deane, C.M.2
Blundell, T.L.3
Overington, J.P.4
-
20
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
146917 9254694 10.1093/nar/25.17.3389
-
Altschul SF Madden TL Schaffer AA Zhang J Zhang Z Miller W Lipman DJ Gapped BLAST and PSI-BLAST: A new generation of protein database search programs Nucleic Acids Res 1997, 25:3389-402. 146917 9254694 10.1093/nar/ 25.17.3389
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
21
-
-
0035940487
-
Deamidation of human proteins
-
60067 11606750 10.1073/pnas.221463198
-
Robinson NE Robinson AB Deamidation of human proteins Proc Natl Acad Sci USA 2001, 98:12409-13. 60067 11606750 10.1073/pnas.221463198
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 12409-12413
-
-
Robinson, N.E.1
Robinson, A.B.2
-
22
-
-
0035027423
-
Patterns of temperature adaptation in proteins from the bacteria Deinococcus radiodurans and Thermus thermophilus
-
11319258
-
McDonald JH Patterns of temperature adaptation in proteins from the bacteria Deinococcus radiodurans and Thermus thermophilus Mol Biol Evol 2001, 18:741-9. 11319258
-
(2001)
Mol Biol Evol
, vol.18
, pp. 741-749
-
-
McDonald, J.H.1
-
23
-
-
0038011431
-
Aminoacyl-tRNA synthesis in archaea: Different but not unique
-
10.1046/j.1365-2958.2003.03330.x 12694610
-
Praetorius-Ibba M Ibba M Aminoacyl-tRNA synthesis in archaea: Different but not unique Mol Microbiol 2003, 48:631-7. 10.1046/ j.1365-2958.2003.03330.x 12694610
-
(2003)
Mol Microbiol
, vol.48
, pp. 631-637
-
-
Praetorius-Ibba, M.1
Ibba, M.2
-
24
-
-
0038824870
-
Mechanisms of thermal adaptation revealed from the genomes of the Antarctic Archaea Methanogenium frigidum and Methanococcoides burtonii
-
403754 12805271 10.1101/gr.1180903
-
Saunders NF Thomas T Curmi PM Mattick JS Kuczek E Slade R Davis J Franzmann PD Boone D Rusterholtz K Mechanisms of thermal adaptation revealed from the genomes of the Antarctic Archaea Methanogenium frigidum and Methanococcoides burtonii Genome Res 2003, 13:1580-8. 403754 12805271 10.1101/gr.1180903
-
(2003)
Genome Res
, vol.13
, pp. 1580-1588
-
-
Saunders, N.F.1
Thomas, T.2
Curmi, P.M.3
Mattick, J.S.4
Kuczek, E.5
Slade, R.6
Davis, J.7
Franzmann, P.D.8
Boone, D.9
Rusterholtz, K.10
-
25
-
-
0034855858
-
How do thermophilic proteins deal with heat?
-
10.1007/PL00000935 11577980
-
Kumar S Nussinov R How do thermophilic proteins deal with heat? Cell Mol Life Sci 2001, 58:1216-33. 10.1007/PL00000935 11577980
-
(2001)
Cell Mol Life Sci
, vol.58
, pp. 1216-1233
-
-
Kumar, S.1
Nussinov, R.2
-
26
-
-
0031273621
-
Continuum solvation model for studying protein hydration thermodynamics at high temperatures
-
10.1021/jp971903q
-
Elcock AH McCammon JA Continuum solvation model for studying protein hydration thermodynamics at high temperatures Journal of Physical Chemistry B 1997, 101:9624-34. 10.1021/jp971903q
-
(1997)
Journal of Physical Chemistry B
, vol.101
, pp. 9624-9634
-
-
Elcock, A.H.1
McCammon, J.A.2
-
27
-
-
0032573431
-
The stability of salt bridges at high temperatures: Implications for hyperthermophilic proteins
-
10.1006/jmbi.1998.2159 9813132
-
Elcock AH The stability of salt bridges at high temperatures: implications for hyperthermophilic proteins J Mol Biol 1998, 284:489-502. 10.1006/jmbi.1998.2159 9813132
-
(1998)
J Mol Biol
, vol.284
, pp. 489-502
-
-
Elcock, A.H.1
-
28
-
-
0033550299
-
Salt bridge stability in monomeric proteins
-
10.1006/jmbi.1999.3218 10547298
-
Kumar S Nussinov R Salt bridge stability in monomeric proteins J Mol Biol 1999, 293:1241-55. 10.1006/jmbi.1999.3218 10547298
-
(1999)
J Mol Biol
, vol.293
, pp. 1241-1255
-
-
Kumar, S.1
Nussinov, R.2
-
29
-
-
0031591389
-
The refined crystal structure of Bacillus cereus oligo-1,6-glucosidase at 2.0 A resolution: Structural characterization of proline-substitution sites for protein thermostabilization
-
10.1006/jmbi.1997.1018 9193006
-
Watanabe K Hata Y Kizaki H Katsube Y Suzuki Y The refined crystal structure of Bacillus cereus oligo-1,6-glucosidase at 2.0 A resolution: structural characterization of proline-substitution sites for protein thermostabilization J Mol Biol 1997, 269:142-53. 10.1006/jmbi.1997.1018 9193006
-
(1997)
J Mol Biol
, vol.269
, pp. 142-153
-
-
Watanabe, K.1
Hata, Y.2
Kizaki, H.3
Katsube, Y.4
Suzuki, Y.5
-
30
-
-
0031837178
-
Enhanced thermal stability of Clostridium beijerinckii alcohol dehydrogenase after strategic substitution of amino acid residues with prolines from the homologous thermophilic Thermoanaerobacter brockii alcohol dehydrogenase
-
9836874
-
Bogin O Peretz M Hacham Y Korkhin Y Frolow F Kalb AJ Burstein Y Enhanced thermal stability of Clostridium beijerinckii alcohol dehydrogenase after strategic substitution of amino acid residues with prolines from the homologous thermophilic Thermoanaerobacter brockii alcohol dehydrogenase Protein Sci 1998, 7:1156-63. 9836874
-
(1998)
Protein Sci
, vol.7
, pp. 1156-1163
-
-
Bogin, O.1
Peretz, M.2
Hacham, Y.3
Korkhin, Y.4
Frolow, F.5
Kalb, A.J.6
Burstein, Y.7
-
31
-
-
2342561102
-
Phylogenomics of hyperthermophilic Archaea and Bacteria
-
10.1042/BST0320175 15046566
-
Klenk HP Spitzer M Ochsenreiter T Fuellen G Phylogenomics of hyperthermophilic Archaea and Bacteria Biochem Soc Trans 2004, 32:175-8. 10.1042/BST0320175 15046566
-
(2004)
Biochem Soc Trans
, vol.32
, pp. 175-178
-
-
Klenk, H.P.1
Spitzer, M.2
Ochsenreiter, T.3
Fuellen, G.4
-
32
-
-
84886764832
-
-
NCBI genome http://www.ncbi.nlm.nih.gov/genomes/lproks.cgi
-
-
-
-
33
-
-
84886759034
-
-
HOMSTRAD http://www-cryst.bioc.cam.ac.uk/homstrad/
-
-
-
-
35
-
-
84886766151
-
-
SUBST http://www-cryst.bioc.cam.ac.uk/~kenji/subst/
-
-
-
-
36
-
-
0035967880
-
FUGUE: Sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties
-
10.1006/jmbi.2001.4762 11419950
-
Shi J Blundell TL Mizuguchi K FUGUE: Sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties J Mol Biol 2001, 310:243-5733. 10.1006/ jmbi.2001.4762 11419950
-
(2001)
J Mol Biol
, vol.310
, pp. 243-5733
-
-
Shi, J.1
Blundell, T.L.2
Mizuguchi, K.3
|