메뉴 건너뛰기




Volumn 8, Issue 2, 2007, Pages 93-111

Consensus higher order repeats and frequency of string distributions in human genome

Author keywords

Alpha satellite; Alphoid; CENP B box; Consensus higher order repeat; Frequency distributionof strings; Higher order repeat (HOR); Human genome; Key string algorithm KSA; pJ motif; Suprachromosomal families

Indexed keywords

CENTROMERE PROTEIN B; CONTIG; DNA FRAGMENT; MONOMER;

EID: 34247894003     PISSN: 13892029     EISSN: None     Source Type: Journal    
DOI: 10.2174/138920207780368169     Document Type: Review
Times cited : (16)

References (126)
  • 1
    • 0015243055 scopus 로고
    • DNA strand reassociation and polyribonucleotide binding in the African green monkey
    • Maio, J.J. DNA strand reassociation and polyribonucleotide binding in the African green monkey. Cercopithecus aethiops. J. Mol.Biol., 1971, 56: 579-595.
    • (1971) Cercopithecus aethiops. J. Mol.Biol , vol.56 , pp. 579-595
    • Maio, J.J.1
  • 2
    • 0017176553 scopus 로고
    • Repeating restriction fragments of human DNA
    • Manuelidis, L. Repeating restriction fragments of human DNA. Nucleic Acids Res., 1976, 3: 3063-3076.
    • (1976) Nucleic Acids Res , vol.3 , pp. 3063-3076
    • Manuelidis, L.1
  • 3
    • 0017812804 scopus 로고
    • Complex and simple sequences in human repeated DNAs
    • Manuelidis, L. Complex and simple sequences in human repeated DNAs. Chromosoma, 1978, 66: 1-21.
    • (1978) Chromosoma , vol.66 , pp. 1-21
    • Manuelidis, L.1
  • 4
    • 0018274661 scopus 로고
    • Chromosomal localization of complex and simple repeated human DNAs
    • Manuelidis, L. Chromosomal localization of complex and simple repeated human DNAs. Chromosoma, 1978, 66: 23-32.
    • (1978) Chromosoma , vol.66 , pp. 23-32
    • Manuelidis, L.1
  • 5
    • 0018278302 scopus 로고
    • Highly iterated sequences of SIMIANSIMIANSIMIANSIMIANSIMIAN
    • Rosenberg, H., Singer, M. and Rosenberg, M. Highly iterated sequences of SIMIANSIMIANSIMIANSIMIANSIMIAN. Science, 1978, 200: 394-402.
    • (1978) Science , vol.200 , pp. 394-402
    • Rosenberg, H.1    Singer, M.2    Rosenberg, M.3
  • 6
    • 0019295214 scopus 로고
    • Sequence definition and organization of a human repeated DNA
    • Wu, J.C. and Manuelidis, L. Sequence definition and organization of a human repeated DNA. J. Mol. Biol., 1980, 142: 363-386.
    • (1980) J. Mol. Biol , vol.142 , pp. 363-386
    • Wu, J.C.1    Manuelidis, L.2
  • 7
    • 0000199459 scopus 로고    scopus 로고
    • Evolution of centromeric alpha satellite DNA: Molecular organization within and between human and primate chromosomes
    • Edited by Jackson, M, Strachan, T, Dover, G. Oxford: BIOS Scientific Publishers;
    • Warburton, P.E., Willard, H.F. Evolution of centromeric alpha satellite DNA: molecular organization within and between human and primate chromosomes. In Human Genome Evolution. Edited by Jackson, M, Strachan, T, Dover, G. Oxford: BIOS Scientific Publishers; 1996, 121-145.
    • (1996) Human Genome Evolution , pp. 121-145
    • Warburton, P.E.1    Willard, H.F.2
  • 8
    • 0004002022 scopus 로고    scopus 로고
    • Oxford: Oxford University Press;
    • Cho, K.H.A. The Centromere. Oxford: Oxford University Press; 1997.
    • (1997) The Centromere
    • Cho, K.H.A.1
  • 9
    • 0021874985 scopus 로고
    • Chromosome-specific organization of human alpha satellite DNA
    • Willard, H.F. Chromosome-specific organization of human alpha satellite DNA. Am. J. Hum. Genet., 1985, 37: 524-532.
    • (1985) Am. J. Hum. Genet , vol.37 , pp. 524-532
    • Willard, H.F.1
  • 10
    • 0022357175 scopus 로고
    • A cloned sequence, p82H, of the alphoid repeated DNA family found at the centromeres of all human chromosomes
    • Mitchell, A.R., Gosden, J.R. and Miller, D.A. A cloned sequence, p82H, of the alphoid repeated DNA family found at the centromeres of all human chromosomes. Chromosoma, 1985, 92: 369-377.
    • (1985) Chromosoma , vol.92 , pp. 369-377
    • Mitchell, A.R.1    Gosden, J.R.2    Miller, D.A.3
  • 11
    • 0023066343 scopus 로고
    • Chromosome-specific subsets of human alpha satellite DNA: Analysis of sequence divergence within and between chromosomal subsets and evidence for an ancestral pentameric repeat
    • Willard, H.F. and Waye, J.S. Chromosome-specific subsets of human alpha satellite DNA: analysis of sequence divergence within and between chromosomal subsets and evidence for an ancestral pentameric repeat. J. Mol. Evol., 1987, 25: 207-214.
    • (1987) J. Mol. Evol , vol.25 , pp. 207-214
    • Willard, H.F.1    Waye, J.S.2
  • 12
    • 0022432047 scopus 로고
    • Chromosome-specific alpha satellite DNA: Nucleotide sequence analysis of the 2.0 kilobasepair repeat from the human X chromosome
    • Waye, J.S. and Willard, H.F. Chromosome-specific alpha satellite DNA: nucleotide sequence analysis of the 2.0 kilobasepair repeat from the human X chromosome. Nucleic Acids Res., 1985, 13: 2731-2743.
    • (1985) Nucleic Acids Res , vol.13 , pp. 2731-2743
    • Waye, J.S.1    Willard, H.F.2
  • 13
    • 0027083417 scopus 로고
    • Structure of DNA near long tandem arrays of alpha satellite DNA at the centromeres of human chromosome 7
    • Wevrick, R., Willard, V.P. and Willard, H.F. Structure of DNA near long tandem arrays of alpha satellite DNA at the centromeres of human chromosome 7. Genomics, 1992, 14: 912-923.
    • (1992) Genomics , vol.14 , pp. 912-923
    • Wevrick, R.1    Willard, V.P.2    Willard, H.F.3
  • 15
    • 0025189579 scopus 로고
    • Potential genetic functions of tandem repeated DNA sequence blocks in the human genome are based on a highly conserved "chromatin folding code
    • Vogt, P. Potential genetic functions of tandem repeated DNA sequence blocks in the human genome are based on a highly conserved "chromatin folding code". Hum. Genet., 1990, 84: 301-336.
    • (1990) Hum. Genet , vol.84 , pp. 301-336
    • Vogt, P.1
  • 16
    • 0026265741 scopus 로고
    • Evolution of alpha satellite
    • Willard, H.F. Evolution of alpha satellite. Curr. Opin. Genet. Dev., 1991, 1: 509-514.
    • (1991) Curr. Opin. Genet. Dev , vol.1 , pp. 509-514
    • Willard, H.F.1
  • 17
    • 0025980674 scopus 로고
    • A survey of the genomic distribution of alpha satellite DNA on all human chromosomes, and derivation of a new consensus sequence
    • Choo, K.H., Vissel, B., Nagy, A., Earle, E. and Kalitsis, P. A survey of the genomic distribution of alpha satellite DNA on all human chromosomes, and derivation of a new consensus sequence. Nucleic Acids Res., 1991, 19: 1179-1182.
    • (1991) Nucleic Acids Res , vol.19 , pp. 1179-1182
    • Choo, K.H.1    Vissel, B.2    Nagy, A.3    Earle, E.4    Kalitsis, P.5
  • 19
    • 30044449656 scopus 로고    scopus 로고
    • The evolutionary dynamics of alpha-satellite
    • Rudd, M.K., Wray, G.A. and Willard, H.F. The evolutionary dynamics of alpha-satellite. Genome Res., 2006, 16: 88-96.
    • (2006) Genome Res , vol.16 , pp. 88-96
    • Rudd, M.K.1    Wray, G.A.2    Willard, H.F.3
  • 20
    • 0027212551 scopus 로고
    • Segment substitutions in alpha satellite DNA. Unusual structure of human chromosome 3-specific alpha satellite repeat unit
    • Alexandrov, I.A., Mashkova, T.D., Romanova, L.Y., Yurov, Y.B. and Kisselev, L.L. Segment substitutions in alpha satellite DNA. Unusual structure of human chromosome 3-specific alpha satellite repeat unit. J. Mol. Biol., 1993, 20: 516-520.
    • (1993) J. Mol. Biol , vol.20 , pp. 516-520
    • Alexandrov, I.A.1    Mashkova, T.D.2    Romanova, L.Y.3    Yurov, Y.B.4    Kisselev, L.L.5
  • 21
  • 22
    • 0344566388 scopus 로고
    • Characterization of a cloned repetitive DNA sequence concentrated on the human X chromosome
    • Yang, T.P., Hansen, S.K., Oishi, K.K., Ryder, O.A. and Hamkalo, B.A. Characterization of a cloned repetitive DNA sequence concentrated on the human X chromosome. Proc. Natl. Acad. Sci. USA, 1982, 79: 6593-6597.
    • (1982) Proc. Natl. Acad. Sci. USA , vol.79 , pp. 6593-6597
    • Yang, T.P.1    Hansen, S.K.2    Oishi, K.K.3    Ryder, O.A.4    Hamkalo, B.A.5
  • 23
    • 0021100775 scopus 로고
    • Isolation and characterization of a major tandem repeat family from the human X chromosome
    • Willard, H.F., Smith, K.D. and Sutherland, J. Isolation and characterization of a major tandem repeat family from the human X chromosome. Nucleic Acids Res., 1983, 11: 2017-2033.
    • (1983) Nucleic Acids Res , vol.11 , pp. 2017-2033
    • Willard, H.F.1    Smith, K.D.2    Sutherland, J.3
  • 24
    • 0021276148 scopus 로고
    • Characterization of a cloned DNA sequence that is present at centromeres of all human autosomes and the X chromosome and shows polymorphic variation
    • Jabs, E.W., Wolf, S.F. and Migeon, B.R. Characterization of a cloned DNA sequence that is present at centromeres of all human autosomes and the X chromosome and shows polymorphic variation. Proc. Natl. Acad. Sci. USA, 1984, 81: 4884-4888.
    • (1984) Proc. Natl. Acad. Sci. USA , vol.81 , pp. 4884-4888
    • Jabs, E.W.1    Wolf, S.F.2    Migeon, B.R.3
  • 27
    • 0022780916 scopus 로고
    • Structure, organization, and sequence of alpha satellite DNA from human chromosome 17: Evidence for evolution by unequal crossing-over and an ancestral pentamer repeat shared with the human X chromosome
    • Waye, J.S. and Willard, H.F. Structure, organization, and sequence of alpha satellite DNA from human chromosome 17: evidence for evolution by unequal crossing-over and an ancestral pentamer repeat shared with the human X chromosome. Moll. Cell. Biol., 1986, 6: 3156-3165.
    • (1986) Moll. Cell. Biol , vol.6 , pp. 3156-3165
    • Waye, J.S.1    Willard, H.F.2
  • 28
    • 0022457028 scopus 로고
    • Isolation and characterization of an alpha satellite repeated sequence from human chromosome 22
    • McDermid, H.E., Duncan, A.M., Higgins, M.J., Hamerton, J.L., Rector, E., brasch, K.R. et al. Isolation and characterization of an alpha satellite repeated sequence from human chromosome 22. Chromosoma, 1986, 94: 228-234.
    • (1986) Chromosoma , vol.94 , pp. 228-234
    • McDermid, H.E.1    Duncan, A.M.2    Higgins, M.J.3    Hamerton, J.L.4    Rector, E.5    brasch, K.R.6
  • 29
    • 0022634838 scopus 로고
    • Sequence heterogeneity within the human alphoid repetitive DNA family
    • Devilee, P., Slagboom, P., Cornelisse, C.J. and Pearson, P.L. Sequence heterogeneity within the human alphoid repetitive DNA family. Nucleic Acids Res., 1986, 14: 2059-2073.
    • (1986) Nucleic Acids Res , vol.14 , pp. 2059-2073
    • Devilee, P.1    Slagboom, P.2    Cornelisse, C.J.3    Pearson, P.L.4
  • 30
    • 0022449165 scopus 로고
    • Chromosome specific subfamilies within human alphoid repetitive DNA
    • Jorgensen, A.L., Bostock, C.J. and Bak, A.L. Chromosome specific subfamilies within human alphoid repetitive DNA. J. Mol. Biol., 1986, 187: 185-196.
    • (1986) J. Mol. Biol , vol.187 , pp. 185-196
    • Jorgensen, A.L.1    Bostock, C.J.2    Bak, A.L.3
  • 31
    • 0023243855 scopus 로고
    • Genomic organization of human centromeric alpha satellite DNA: Characterization of a chromosome 17 alpha satellite sequence
    • Choo, K.H., Brown, R., Webb, G., Craig, I.W. and Filby, R.G. Genomic organization of human centromeric alpha satellite DNA: characterization of a chromosome 17 alpha satellite sequence. DNA, 1987, 6: 297-305.
    • (1987) DNA , vol.6 , pp. 297-305
    • Choo, K.H.1    Brown, R.2    Webb, G.3    Craig, I.W.4    Filby, R.G.5
  • 32
    • 0023248294 scopus 로고
    • Organization and evolution of alpha satellite DNA from human chromosome 11
    • Waye, J.S., Creeper, L.A. and Willard, H.F. Organization and evolution of alpha satellite DNA from human chromosome 11. Chromosoma, 1987, 95: 182-188.
    • (1987) Chromosoma , vol.95 , pp. 182-188
    • Waye, J.S.1    Creeper, L.A.2    Willard, H.F.3
  • 33
    • 0023354686 scopus 로고
    • Application of cloned satellite DNA sequences to molecular-cytogenetic analysis of constitutive heterochromatin heteromorphisms in man
    • Yurov, Y.B., Mitkevich, S.P. and Alexandrov, I.A. Application of cloned satellite DNA sequences to molecular-cytogenetic analysis of constitutive heterochromatin heteromorphisms in man. Hum. Genet., 1987, 76: 157-164.
    • (1987) Hum. Genet , vol.76 , pp. 157-164
    • Yurov, Y.B.1    Mitkevich, S.P.2    Alexandrov, I.A.3
  • 34
    • 0023414542 scopus 로고
    • Chromosome-specific alpha satellite DNA from human chromosome 1: Hierarchical structure and genomic organization of a polymorphic domain spanning several hundred kilobase pairs of centromeric DNA
    • Waye, J.S., Durfy, S.J., Pinkel, D., Kenwrick, S., Patterson, M., Davies, K.E. and Willard, H.F. Chromosome-specific alpha satellite DNA from human chromosome 1: hierarchical structure and genomic organization of a polymorphic domain spanning several hundred kilobase pairs of centromeric DNA. Genomics, 1987, 1: 43-51.
    • (1987) Genomics , vol.1 , pp. 43-51
    • Waye, J.S.1    Durfy, S.J.2    Pinkel, D.3    Kenwrick, S.4    Patterson, M.5    Davies, K.E.6    Willard, H.F.7
  • 35
    • 0023064191 scopus 로고
    • Genomic organization of alpha satellite DNA on human chromosome 7: Evidence for two distinct alphoid domains on a single chromosome
    • Waye, J.S., England, S.B. and Willard, H.F. Genomic organization of alpha satellite DNA on human chromosome 7: evidence for two distinct alphoid domains on a single chromosome. Mol. Cell. Biol., 1987, 7: 349-356.
    • (1987) Mol. Cell. Biol , vol.7 , pp. 349-356
    • Waye, J.S.1    England, S.B.2    Willard, H.F.3
  • 37
    • 0023584985 scopus 로고
    • Characterization of human centromeric regions of specific chromosomes by means of alphoid DNA sequences
    • Jabs, E.W. and Persico, M.G. Characterization of human centromeric regions of specific chromosomes by means of alphoid DNA sequences. Am. J. Hum. Genet., 1987, 41: 374-390.
    • (1987) Am. J. Hum. Genet , vol.41 , pp. 374-390
    • Jabs, E.W.1    Persico, M.G.2
  • 38
    • 0023147432 scopus 로고
    • Homologous sub-families of human alphoid repetitive DNA on different nucleolus organizing chromosomes
    • Jorgensen, A.L., Bostock, C.J. and Bak, A.L. Homologous sub-families of human alphoid repetitive DNA on different nucleolus organizing chromosomes. Proc. Natl. Acad. Sci. USA, 1987, 84: 1075-1079.
    • (1987) Proc. Natl. Acad. Sci. USA , vol.84 , pp. 1075-1079
    • Jorgensen, A.L.1    Bostock, C.J.2    Bak, A.L.3
  • 39
    • 0023664997 scopus 로고
    • Nucleotide sequence heterogeneity of alpha satellite repetitive DNA: A survey of alphoid sequences from different human chromosomes
    • Waye, J.S. and Willard, H.F. Nucleotide sequence heterogeneity of alpha satellite repetitive DNA: a survey of alphoid sequences from different human chromosomes. Nucleic Acids Res., 1987, 15: 7549-7569.
    • (1987) Nucleic Acids Res , vol.15 , pp. 7549-7569
    • Waye, J.S.1    Willard, H.F.2
  • 40
    • 0023644911 scopus 로고
    • Structure of the major block of alphoid satellite DNA on the human Y chromosome
    • Tyler-Smith, C. and Brown, W.R.A. Structure of the major block of alphoid satellite DNA on the human Y chromosome. J. Mol. Biol., 1987, 195: 457-470.
    • (1987) J. Mol. Biol , vol.195 , pp. 457-470
    • Tyler-Smith, C.1    Brown, W.R.A.2
  • 42
    • 0023805457 scopus 로고    scopus 로고
    • Hulsebos, T., Schonk, D., Dalen, I., v., Coerwinkel-Driessen, M., Schepens, J., Ropers, H.H. and Wieringa, B. Isolation and characterization of alphoid DNA sequences for the pericentric regions of chromosomes 4, 5, 9, and 19. Cytogenet Cell Genet., 1988, 47: 144-148.
    • Hulsebos, T., Schonk, D., Dalen, I., v., Coerwinkel-Driessen, M., Schepens, J., Ropers, H.H. and Wieringa, B. Isolation and characterization of alphoid DNA sequences for the pericentric regions of chromosomes 4, 5, 9, and 19. Cytogenet Cell Genet., 1988, 47: 144-148.
  • 43
    • 0024048877 scopus 로고
    • Chromosome-specific alpha satellite DNA: Isolation and mapping of a polymorphic alphoid repeat from human chromosome 10
    • Devilee, P., Kievits, T., Waye, J.S., Pearson, P.L. and Willard, H.F. Chromosome-specific alpha satellite DNA: isolation and mapping of a polymorphic alphoid repeat from human chromosome 10. Genomics, 1988, 3: 1-7.
    • (1988) Genomics , vol.3 , pp. 1-7
    • Devilee, P.1    Kievits, T.2    Waye, J.S.3    Pearson, P.L.4    Willard, H.F.5
  • 44
    • 0023905361 scopus 로고
    • Homologous alpha satellite sequences on human acrocentric chromosomes with selectivity for chromosomes 13, 14 and 21: Implications for recombination between nonhomologues and Robertsonian translocations
    • Choo, K.H., Vissel, B., Brown, R., Filby, R.G. and Earle, E. Homologous alpha satellite sequences on human acrocentric chromosomes with selectivity for chromosomes 13, 14 and 21: implications for recombination between nonhomologues and Robertsonian translocations. Nucleic Acids Res., 1988, 16: 1273-1284.
    • (1988) Nucleic Acids Res , vol.16 , pp. 1273-1284
    • Choo, K.H.1    Vissel, B.2    Brown, R.3    Filby, R.G.4    Earle, E.5
  • 45
    • 0024066461 scopus 로고
    • A subfamily of alphoid repetitive DNA shared by the NOR-bearing human chromosomes 14 and 22
    • Jorgensen, A.L., Kolvraa, S., Jones, C. and Bak, A.L. A subfamily of alphoid repetitive DNA shared by the NOR-bearing human chromosomes 14 and 22. Genomics, 1988, 3: 1000-1009.
    • (1988) Genomics , vol.3 , pp. 1000-1009
    • Jorgensen, A.L.1    Kolvraa, S.2    Jones, C.3    Bak, A.L.4
  • 46
    • 0023867054 scopus 로고
    • Organization and genomic distribution of 82H alpha satellite DNA. Evidence for a low copy or single-copy alphoid domain located on human chromosome 14
    • Waye, J.S., Mitchell, A.R. and Willard, H.F. Organization and genomic distribution of «82H» alpha satellite DNA. Evidence for a low copy or single-copy alphoid domain located on human chromosome 14. Hum. Genet., 1988, 78: 27-32.
    • (1988) Hum. Genet , vol.78 , pp. 27-32
    • Waye, J.S.1    Mitchell, A.R.2    Willard, H.F.3
  • 47
    • 0023729181 scopus 로고
    • Molecular cytogenetic evidence for amplification of chromosome-specific alphoid sequences at enlarged C-bands on chromosome 6
    • Jabs, E.W. and Carpenter, N. Molecular cytogenetic evidence for amplification of chromosome-specific alphoid sequences at enlarged C-bands on chromosome 6. Am. J. Hum. Genet., 1988, 43: 69-74.
    • (1988) Am. J. Hum. Genet , vol.43 , pp. 69-74
    • Jabs, E.W.1    Carpenter, N.2
  • 48
    • 0024758528 scopus 로고
    • A human alphoid DNA clone from the EcoRI dimeric family: Genomic and internal organization and chromosomal assignment
    • Baldini, A., Smith, D.I., Rocchi, M., Miller, O.J. and Miller, D.A. A human alphoid DNA clone from the EcoRI dimeric family: genomic and internal organization and chromosomal assignment. Genomics, 1989, 5: 822-828.
    • (1989) Genomics , vol.5 , pp. 822-828
    • Baldini, A.1    Smith, D.I.2    Rocchi, M.3    Miller, O.J.4    Miller, D.A.5
  • 49
    • 0024372937 scopus 로고
    • Chromosome specificity of satellite DNAs: Short- and long-range organization of a diverged dimeric subset of human alpha satellite from chromosome 3
    • Waye, J.S. and Willard, H.F. Chromosome specificity of satellite DNAs: short- and long-range organization of a diverged dimeric subset of human alpha satellite from chromosome 3. Chromosoma, 1989, 97: 475-480.
    • (1989) Chromosoma , vol.97 , pp. 475-480
    • Waye, J.S.1    Willard, H.F.2
  • 50
    • 34247885625 scopus 로고
    • Cloned alpha satellite fragment - the molecular marker of human chromosome 4: Sequence, genomic organization, polymorphism
    • Alexandrov, I.A., Akopian, T.A., Vinnik, E.A., Mitkevich, S.P., Kisselev, L.L. and Yurov, Y.B. Cloned alpha satellite fragment - the molecular marker of human chromosome 4: sequence, genomic organization, polymorphism. Cytogenet. Cell Genet., 1989, 1989: 949.
    • (1989) Cytogenet. Cell Genet , vol.1989 , pp. 949
    • Alexandrov, I.A.1    Akopian, T.A.2    Vinnik, E.A.3    Mitkevich, S.P.4    Kisselev, L.L.5    Yurov, Y.B.6
  • 51
    • 0024801180 scopus 로고
    • Chromosome-specific alpha satellite DNA from the centromere of human chromosome 16
    • Greig, G.M., England, S.B., Bedford, H.M. and Willard, H.F. Chromosome-specific alpha satellite DNA from the centromere of human chromosome 16. Am. J. Hum. Genet., 1989, 45: 862-872.
    • (1989) Am. J. Hum. Genet , vol.45 , pp. 862-872
    • Greig, G.M.1    England, S.B.2    Bedford, H.M.3    Willard, H.F.4
  • 52
    • 0024379003 scopus 로고
    • Long-range organization of tandem arrays of alpha satellite DNA at the centromeres of human chromosomes: High frequency array-length polymorphism and meiotic stability
    • Wevrick R, Willard HF (1989) Long-range organization of tandem arrays of alpha satellite DNA at the centromeres of human chromosomes: High frequency array-length polymorphism and meiotic stability. Proc. Natl. Acad. Sci. USA, 86: 9394-9398.
    • (1989) Proc. Natl. Acad. Sci. USA , vol.86 , pp. 9394-9398
    • Wevrick, R.1    Willard, H.F.2
  • 54
    • 0024558708 scopus 로고
    • Macromolecular organization of human centromeric regions reveals high-frequency, polymorphic macro DNA repeats
    • Jabs, E.W., Goble, C.A. and Cutting, G.R. Macromolecular organization of human centromeric regions reveals high-frequency, polymorphic macro DNA repeats. Proc. Natl. Acad. Sci. USA, 1989, 86: 202-206.
    • (1989) Proc. Natl. Acad. Sci. USA , vol.86 , pp. 202-206
    • Jabs, E.W.1    Goble, C.A.2    Cutting, G.R.3
  • 55
    • 0024429163 scopus 로고
    • Molecular characterization of human minichromosomes with centromere from chromosome 1 in human-hamster hybrid cells
    • Carine, K., Jacquemin-Sablon, A., Waltzer, E., Mascarello, J. and Scheffler, I.E. Molecular characterization of human minichromosomes with centromere from chromosome 1 in human-hamster hybrid cells. Somat. Cell. Mol. Genet., 1989, 15: 445-460.
    • (1989) Somat. Cell. Mol. Genet , vol.15 , pp. 445-460
    • Carine, K.1    Jacquemin-Sablon, A.2    Waltzer, E.3    Mascarello, J.4    Scheffler, I.E.5
  • 56
    • 0025602739 scopus 로고
    • Chromosome-specific subsets of human alphoid DNA identified by a chromosome 2-derived clone
    • Rocchi, M., Baldini, A., Archidiacono, N., Lainwala, S., Miller, O.J. and Miller, D.A. Chromosome-specific subsets of human alphoid DNA identified by a chromosome 2-derived clone. Genomics, 1990, 8: 705-709.
    • (1990) Genomics , vol.8 , pp. 705-709
    • Rocchi, M.1    Baldini, A.2    Archidiacono, N.3    Lainwala, S.4    Miller, O.J.5    Miller, D.A.6
  • 57
    • 0025307633 scopus 로고
    • HinfI RFLPs detected by p-alpha-10RP8 at D10Z1
    • Carson, N.L. and Simpson, N.E. Two HinfI RFLPs detected by p-alpha-10RP8 at D10Z1. Nucleic Acids Res., 1990, 18: 1932.
    • (1990) Nucleic Acids Res , vol.18 , pp. 1932
    • Carson, N.L.1
  • 60
    • 0025021888 scopus 로고
    • Extensive sequence polymorphisms associated with chromosome 10 alpha satellite DNA and its close linkage to markers from the pericentromeric region
    • Wu, J.S. and Kidd, K.K. Extensive sequence polymorphisms associated with chromosome 10 alpha satellite DNA and its close linkage to markers from the pericentromeric region. Hum. Genet., 1990, 84: 279-282.
    • (1990) Hum. Genet , vol.84 , pp. 279-282
    • Wu, J.S.1    Kidd, K.K.2
  • 61
    • 0025356466 scopus 로고
    • Identification of two distant subfamilies of alpha satellite DNA that are highly specific for human chromosome 15
    • Choo, K.H., Earle, E., Vissel, B. and Filby, R.G. Identification of two distant subfamilies of alpha satellite DNA that are highly specific for human chromosome 15. Genomics, 1990, 7: 143-151.
    • (1990) Genomics , vol.7 , pp. 143-151
    • Choo, K.H.1    Earle, E.2    Vissel, B.3    Filby, R.G.4
  • 63
    • 0025891962 scopus 로고
    • Molecular cytogenetics of alpha satellite DNA from chromosome 12: Fluorescence in situ hybridization and description of DNA and array length polymorphisms
    • Greig, G.M., Parikh, S., George, J., Powers, V.E. and Willard, H.F. Molecular cytogenetics of alpha satellite DNA from chromosome 12: fluorescence in situ hybridization and description of DNA and array length polymorphisms. Cytogenet. Cell Genet., 1991, 56: 144-148.
    • (1991) Cytogenet. Cell Genet , vol.56 , pp. 144-148
    • Greig, G.M.1    Parikh, S.2    George, J.3    Powers, V.E.4    Willard, H.F.5
  • 64
    • 0026080822 scopus 로고
    • Four distinct satellite subfamilies shared by human chromosomes 13, 14, and 21
    • Vissel, B. and Choo, K.H. Four distinct satellite subfamilies shared by human chromosomes 13, 14, and 21. Nucleic Acids Res., 1991, 19: 271-277.
    • (1991) Nucleic Acids Res , vol.19 , pp. 271-277
    • Vissel, B.1    Choo, K.H.2
  • 65
    • 0026070467 scopus 로고
    • A human chromosome 9-specific alphoid DNA repeat spatially resolvable from satellite 3 DNA by fluorescent in situ hybridization
    • Rocchi, M., Archidiacono, N., Ward, D.C. and Baldini, A. A human chromosome 9-specific alphoid DNA repeat spatially resolvable from satellite 3 DNA by fluorescent in situ hybridization. Genomics, 1991, 9: 517-523.
    • (1991) Genomics , vol.9 , pp. 517-523
    • Rocchi, M.1    Archidiacono, N.2    Ward, D.C.3    Baldini, A.4
  • 66
    • 0025806731 scopus 로고
    • Physical map of the centromeric region of human chromosome 7: Relationship between two distinct alpha satellite arrays
    • Wevrick, R. and Willard, H.F. Physical map of the centromeric region of human chromosome 7: relationship between two distinct alpha satellite arrays. Nucleic Acids Res., 1991, 19: 2295-2301.
    • (1991) Nucleic Acids Res , vol.19 , pp. 2295-2301
    • Wevrick, R.1    Willard, H.F.2
  • 67
    • 0023224740 scopus 로고
    • Hierarchical order in chromosome-specific human alpha satellite DNA
    • Willard, H.F. and Waye, J.S. Hierarchical order in chromosome-specific human alpha satellite DNA. Trends Genet., 1991, 3: 192-198.
    • (1991) Trends Genet , vol.3 , pp. 192-198
    • Willard, H.F.1    Waye, J.S.2
  • 68
    • 0025963016 scopus 로고
    • Structural organization and polymorphism of the alpha satellite DNA sequences of chromosomes 13 and 21 as revealed by pulsed field gel electrophoresis
    • Marcais, B., Bellis, M., Gerard, A., Pages, M., Boublik, Y. and Roizes, G. Structural organization and polymorphism of the alpha satellite DNA sequences of chromosomes 13 and 21 as revealed by pulsed field gel electrophoresis. Hum. Genet., 1991, 86: 311-316.
    • (1991) Hum. Genet , vol.86 , pp. 311-316
    • Marcais, B.1    Bellis, M.2    Gerard, A.3    Pages, M.4    Boublik, Y.5    Roizes, G.6
  • 69
    • 0026594586 scopus 로고
    • Organization, polymorphism, and molecular cytogenetics of chromosome-specific alpha-satellite DNA from the centromere of chromosome 2
    • Haaf, T. and Willard, H.F. Organization, polymorphism, and molecular cytogenetics of chromosome-specific alpha-satellite DNA from the centromere of chromosome 2. Genomics, 1992, 13: 122-128.
    • (1992) Genomics , vol.13 , pp. 122-128
    • Haaf, T.1    Willard, H.F.2
  • 70
    • 0026696006 scopus 로고
    • Sequence, higher order repeat structure, and long-range organization of alpha satellite DNA specific to human chromosome 8
    • Ge, Y., Wagner, M.J., Siciliano, M. and Wells, D.E. Sequence, higher order repeat structure, and long-range organization of alpha satellite DNA specific to human chromosome 8. Genomics, 1992, 13: 585-593.
    • (1992) Genomics , vol.13 , pp. 585-593
    • Ge, Y.1    Wagner, M.J.2    Siciliano, M.3    Wells, D.E.4
  • 71
    • 0026673215 scopus 로고
    • Alpha satellite DNAs on chromosome 10 and 12 are both members of the dimeric suprachromosomal subfamily, but display little identity at the nucleotide sequence level
    • Looijenga, L.H.J., Oosterhuis, J.W., Smit, V.T.H., Wessels, J.W., Mollevanger, P. and Devilee, P. Alpha satellite DNAs on chromosome 10 and 12 are both members of the dimeric suprachromosomal subfamily, but display little identity at the nucleotide sequence level. Genomics, 1992, 13: 1125-1132.
    • (1992) Genomics , vol.13 , pp. 1125-1132
    • Looijenga, L.H.J.1    Oosterhuis, J.W.2    Smit, V.T.H.3    Wessels, J.W.4    Mollevanger, P.5    Devilee, P.6
  • 73
    • 0026739878 scopus 로고
    • Characterisation of a boundary between satellite III and alphoid sequences on human chromosome 10
    • Jackson, M.S., Mole, S.E. and Ponder, B.A.J. Characterisation of a boundary between satellite III and alphoid sequences on human chromosome 10. Nucleic Acids Res., 1992, 20: 4781-4787.
    • (1992) Nucleic Acids Res , vol.20 , pp. 4781-4787
    • Jackson, M.S.1    Mole, S.E.2    Ponder, B.A.J.3
  • 74
    • 0027433309 scopus 로고
    • Cloning and comparative mapping of a human chromosome 4-specific alpha satellite DNA sequence
    • D'Aiuto, L., Antonacci, R., Marzella, R., Archidiacono, N. and Rocchi, M. Cloning and comparative mapping of a human chromosome 4-specific alpha satellite DNA sequence. Genomics, 1993, 18: 230-235.
    • (1993) Genomics , vol.18 , pp. 230-235
    • D'Aiuto, L.1    Antonacci, R.2    Marzella, R.3    Archidiacono, N.4    Rocchi, M.5
  • 75
    • 0027265622 scopus 로고
    • The major centromeric array of alphoid satellite DNA on the human Y chromosome is non-palindromic
    • Cooper, K.F., Fisher, R.B. and Tyler-Smith, C. The major centromeric array of alphoid satellite DNA on the human Y chromosome is non-palindromic. Hum. Mol. Genet., 1993, 2: 1267-1270.
    • (1993) Hum. Mol. Genet , vol.2 , pp. 1267-1270
    • Cooper, K.F.1    Fisher, R.B.2    Tyler-Smith, C.3
  • 76
    • 0027422159 scopus 로고
    • The organization and evolution of an alpha satellite subset shared by chromosomes 13 and 21
    • Greig, G.M., Warburton, P.E, and Willard, H.F. The organization and evolution of an alpha satellite subset shared by chromosomes 13 and 21. J. Mol. Evol., 1993, 37: 464-475.
    • (1993) J. Mol. Evol , vol.37 , pp. 464-475
    • Greig, G.M.1    Warburton, P.E.2    Willard, H.F.3
  • 77
    • 0027756756 scopus 로고
    • The organization of repetitive sequences in the pericentromeric region of human chromosome 10
    • Jackson, M.S., Slijepcevic, P. and Ponder, B.A.J. The organization of repetitive sequences in the pericentromeric region of human chromosome 10. Nucleic Acids Res., 1993, 21: 5865-5874.
    • (1993) Nucleic Acids Res , vol.21 , pp. 5865-5874
    • Jackson, M.S.1    Slijepcevic, P.2    Ponder, B.A.J.3
  • 78
    • 0027379760 scopus 로고
    • Long-range analyses of the centromeric regions of human chromosomes 13, 14 and 21: Identification of a narrow domain containing two key centromeric DNA elements
    • Trowell, H.E., Nagy, A., Vissel, B. and Choo, K.H. Long-range analyses of the centromeric regions of human chromosomes 13, 14 and 21: identification of a narrow domain containing two key centromeric DNA elements. Hum. Mol. Genet., 1993, 2: 1639-1649.
    • (1993) Hum. Mol. Genet , vol.2 , pp. 1639-1649
    • Trowell, H.E.1    Nagy, A.2    Vissel, B.3    Choo, K.H.4
  • 80
    • 0028224263 scopus 로고
    • De novo formation of several features of a centromere following introduction of a Y alphoid YAC into mammalian cells
    • Larin, Z., Fricker, M.D. and Tyler-Smith, C. De novo formation of several features of a centromere following introduction of a Y alphoid YAC into mammalian cells. Hum. Mol. Genet., 1994, 3: 689-695.
    • (1994) Hum. Mol. Genet , vol.3 , pp. 689-695
    • Larin, Z.1    Fricker, M.D.2    Tyler-Smith, C.3
  • 81
    • 0027980680 scopus 로고
    • Distribution of CENP-B boxes reflected in CREST centromere antigenic sites on long-range alpha-satellite DNA arrays of human chromosome 21
    • Ikeno, M., Masumoto, H., Okazaki, T. Distribution of CENP-B boxes reflected in CREST centromere antigenic sites on long-range alpha-satellite DNA arrays of human chromosome 21. Hum. Mol. Genet., 1994, 3: 1245-1257.
    • (1994) Hum. Mol. Genet , vol.3 , pp. 1245-1257
    • Ikeno, M.1    Masumoto, H.2    Okazaki, T.3
  • 82
    • 0030589716 scopus 로고    scopus 로고
    • Finelli, P., Antonacci, R., Marzella, R., Lonoce, A., Archidiacono, N. and Rocchi, M. Structural organization of multiple alphoid subsets coexisting on human chromosomes 1, 4, 5, 7, 9, 15, 18, and 19. Genomics, 1996, 38: 325-330.
    • Finelli, P., Antonacci, R., Marzella, R., Lonoce, A., Archidiacono, N. and Rocchi, M. Structural organization of multiple alphoid subsets coexisting on human chromosomes 1, 4, 5, 7, 9, 15, 18, and 19. Genomics, 1996, 38: 325-330.
  • 83
    • 0030842231 scopus 로고    scopus 로고
    • The distribution of binding sites for centromere protein B (CENP-B) is partly conserved among diverged higher order repeating units of human chromosome 6-specific alphoid DNA
    • Sugimoto, K., Furukawa, K., Kusumi, K. and Himeno, M. The distribution of binding sites for centromere protein B (CENP-B) is partly conserved among diverged higher order repeating units of human chromosome 6-specific alphoid DNA. Chromosome Res., 1997, 5: 395-405.
    • (1997) Chromosome Res , vol.5 , pp. 395-405
    • Sugimoto, K.1    Furukawa, K.2    Kusumi, K.3    Himeno, M.4
  • 84
    • 0031911344 scopus 로고    scopus 로고
    • Physical and genetic mapping of the human X chromosome centromere - repression of recombination
    • Mahtani, M.M. and Willard, H.F. Physical and genetic mapping of the human X chromosome centromere - repression of recombination. PCR Meth. Appl., 1998, 8: 100-110.
    • (1998) PCR Meth. Appl , vol.8 , pp. 100-110
    • Mahtani, M.M.1    Willard, H.F.2
  • 87
    • 0032717569 scopus 로고    scopus 로고
    • Extreme reduction of chromosome-specific alpha satellite array is unusually common in human chromosome 21
    • Lo, A.W.I., Liao,G.C.C., Rocchi, M. and Choo, K.H.A. Extreme reduction of chromosome-specific alpha satellite array is unusually common in human chromosome 21. Genome Res., 1999, 9, 895-908.
    • (1999) Genome Res , vol.9 , pp. 895-908
    • Lo, A.W.I.1    Liao, G.C.C.2    Rocchi, M.3    Choo, K.H.A.4
  • 88
    • 0033799982 scopus 로고    scopus 로고
    • Alpha satellite DNA variant-specific oligoprobes differing by a single base can distinguish chromosome 15 homologs
    • O'Keefe, C.L. and Matera, A.G. Alpha satellite DNA variant-specific oligoprobes differing by a single base can distinguish chromosome 15 homologs. Genome Res., 2000, 10: 1342-1350.
    • (2000) Genome Res , vol.10 , pp. 1342-1350
    • O'Keefe, C.L.1    Matera, A.G.2
  • 89
    • 0035808351 scopus 로고    scopus 로고
    • Structural rearrangements and insertions of dispersed elements in pericentromeric alpha satellites occur preferably at kinkable DNA sites
    • Mashkova, T.D., Oparina, N.Y., Lacroix, M.L., Fedorova, L.I., Tumeneva, I.G., Zinovieva, O.L. and Kisselev, L.L. Structural rearrangements and insertions of dispersed elements in pericentromeric alpha satellites occur preferably at kinkable DNA sites. J. Mol. Biol., 2001, 305: 33-48.
    • (2001) J. Mol. Biol , vol.305 , pp. 33-48
    • Mashkova, T.D.1    Oparina, N.Y.2    Lacroix, M.L.3    Fedorova, L.I.4    Tumeneva, I.G.5    Zinovieva, O.L.6    Kisselev, L.L.7
  • 90
    • 4744339350 scopus 로고    scopus 로고
    • Analysis of the centromeric regions of the human genome assembly
    • Rudd, M.K., Willard, H.F. Analysis of the centromeric regions of the human genome assembly. Trends Genet., 2004, 20: 529-533.
    • (2004) Trends Genet , vol.20 , pp. 529-533
    • Rudd, M.K.1    Willard, H.F.2
  • 91
    • 0036790633 scopus 로고    scopus 로고
    • Co-localization of centromere activity, proteins and topoisomerase II within a subdomain of the major human X alpha-satellite array
    • Spence, J.M., Critcher, R., Ebersole, T.A., Valdivia, M.M., Earnshaw, W.C., Fukagawa, T. and Farr, C.J. Co-localization of centromere activity, proteins and topoisomerase II within a subdomain of the major human X alpha-satellite array. EMBO J., 2002, 21: 5269-5280.
    • (2002) EMBO J , vol.21 , pp. 5269-5280
    • Spence, J.M.1    Critcher, R.2    Ebersole, T.A.3    Valdivia, M.M.4    Earnshaw, W.C.5    Fukagawa, T.6    Farr, C.J.7
  • 92
    • 0031282531 scopus 로고    scopus 로고
    • Chromatin containing CENP-A and alpha satellite DNA is a major component of the inner kinetochore plate
    • Vafa, O. and Sullivan, K.F. Chromatin containing CENP-A and alpha satellite DNA is a major component of the inner kinetochore plate. Curr. Biol., 1997, 7: 897-900.
    • (1997) Curr. Biol , vol.7 , pp. 897-900
    • Vafa, O.1    Sullivan, K.F.2
  • 93
    • 0036121561 scopus 로고    scopus 로고
    • CENP-A, -B, and -C chromatin complex that contains the I-type alpha-satellite array constitutes the prekinetochore in HeLa cells
    • Ando, S., Yang, H., Nozaki, N., Okazaki, T. and Yoda, K. CENP-A, -B, and -C chromatin complex that contains the I-type alpha-satellite array constitutes the prekinetochore in HeLa cells. Mol. Cell. Biol., 2002, 22: 2229-2241.
    • (2002) Mol. Cell. Biol , vol.22 , pp. 2229-2241
    • Ando, S.1    Yang, H.2    Nozaki, N.3    Okazaki, T.4    Yoda, K.5
  • 94
    • 0030910465 scopus 로고    scopus 로고
    • Formation of de novo centromeres and construction of first-generation human artificial microchromosomes
    • Harrington, J.J., Van Bokkelen, G., Mays, R.W., Gustasshaw, K. and Willard, H.F. Formation of de novo centromeres and construction of first-generation human artificial microchromosomes. Nat. Genet., 1997, 15: 345-355.
    • (1997) Nat. Genet , vol.15 , pp. 345-355
    • Harrington, J.J.1    Van Bokkelen, G.2    Mays, R.W.3    Gustasshaw, K.4    Willard, H.F.5
  • 97
    • 0027968068 scopus 로고
    • CUSTAL-W-improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J.D., Higgins, D.G. and Gibson, T.J. CUSTAL-W-improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res., 1994, 22: 4673-4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 98
    • 0029654258 scopus 로고
    • A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis
    • Sonnhammer, E.L. and Durbin, R. A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis. Gene, 1995, 167: GC1-10.
    • (1995) Gene , vol.167
    • Sonnhammer, E.L.1    Durbin, R.2
  • 99
    • 0030094146 scopus 로고    scopus 로고
    • CENSOR - a program for identification and elimination of repetitive elements from DNA sequences
    • Jurka, J., Klonowski, P., Dagman, V. and Pelton, P. CENSOR - a program for identification and elimination of repetitive elements from DNA sequences. Comput. Chem., 1996, 20: 119-121.
    • (1996) Comput. Chem , vol.20 , pp. 119-121
    • Jurka, J.1    Klonowski, P.2    Dagman, V.3    Pelton, P.4
  • 101
    • 0031923832 scopus 로고    scopus 로고
    • On the distribution of the k-tuple matches for sequence homology: A constant time exact calculation of the variance
    • Benson, G. and Su, X. On the distribution of the k-tuple matches for sequence homology: a constant time exact calculation of the variance. J. Comput. Biol., 1998, 5: 86-100.
    • (1998) J. Comput. Biol , vol.5 , pp. 86-100
    • Benson, G.1    Su, X.2
  • 102
    • 0031752310 scopus 로고    scopus 로고
    • Identifying satellites and repetitions in biological sequences
    • Sagot, M.F. and Myers, E.W. Identifying satellites and repetitions in biological sequences. J. Comput. Biol., 1998, 5: 539-553.
    • (1998) J. Comput. Biol , vol.5 , pp. 539-553
    • Sagot, M.F.1    Myers, E.W.2
  • 103
    • 0033555906 scopus 로고    scopus 로고
    • Tandem repeats finder: A program to analyze DNA sequences
    • Benson, G. Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res., 1999, 27: 573-580.
    • (1999) Nucleic Acids Res , vol.27 , pp. 573-580
    • Benson, G.1
  • 104
    • 0032604145 scopus 로고    scopus 로고
    • Delgrange, O., Dauchet, M. and Rivals, E. Location of repetitive regions in sequences by optimizing a compression method. In Pacific Symposium on Biocomputing. Co-Chairs Altman, R.B., Dunker, A.K., Hunter, L., Klein, T.E. The Orchid at Mauna Lani: 1999, 245-265.
    • Delgrange, O., Dauchet, M. and Rivals, E. Location of repetitive regions in sequences by optimizing a compression method. In Pacific Symposium on Biocomputing. Co-Chairs Altman, R.B., Dunker, A.K., Hunter, L., Klein, T.E. The Orchid at Mauna Lani: 1999, 245-265.
  • 105
    • 34247858796 scopus 로고    scopus 로고
    • Smit, A.F.A., Hubley, R. and Green, P. RepeatMasker at http://repeatmasker.org
    • Smit, A.F.A., Hubley, R. and Green, P. RepeatMasker at http://repeatmasker.org
  • 106
    • 0034284437 scopus 로고    scopus 로고
    • Jurka, J.Repbase update: a database and an electronic journal of repetitive elements. Trends Genet., 2000, 16: 418-420.
    • Jurka, J.Repbase update: a database and an electronic journal of repetitive elements. Trends Genet., 2000, 16: 418-420.
  • 108
    • 0034924152 scopus 로고    scopus 로고
    • An algorithm for approximate tandem repeats
    • Landau, G.M., Schmidt, J.P. and Sokol, D. An algorithm for approximate tandem repeats. J. Comput. Biol., 2001, 8: 1-18.
    • (2001) J. Comput. Biol , vol.8 , pp. 1-18
    • Landau, G.M.1    Schmidt, J.P.2    Sokol, D.3
  • 109
    • 0037028427 scopus 로고    scopus 로고
    • Simple and flexible detection of contiguous repeats using a suffix tree
    • Stoye, J. and Gusfield, D. Simple and flexible detection of contiguous repeats using a suffix tree. Theor. Computer Sci., 2001, 270: 843-856.
    • (2001) Theor. Computer Sci , vol.270 , pp. 843-856
    • Stoye, J.1    Gusfield, D.2
  • 110
    • 0035230042 scopus 로고    scopus 로고
    • Clustering method for repeat analysis in DNA sequences
    • Volfovsky, N., Haas, B.J. and Salberg, S.L. Clustering method for repeat analysis in DNA sequences. Genome Biol., 2001, 2: 1-11.
    • (2001) Genome Biol , vol.2 , pp. 1-11
    • Volfovsky, N.1    Haas, B.J.2    Salberg, S.L.3
  • 111
    • 0035999989 scopus 로고    scopus 로고
    • TROLL-tandem repeat occurrence locator
    • Castello, A.T., Martins, W. and Gao, G.R. TROLL-tandem repeat occurrence locator. Bioinformatics, 2002, 18: 634-636.
    • (2002) Bioinformatics , vol.18 , pp. 634-636
    • Castello, A.T.1    Martins, W.2    Gao, G.R.3
  • 112
    • 0042151442 scopus 로고    scopus 로고
    • Beyond tandem repeats: Complex pattern structures and distant regions of similarity
    • Hauth, A.M. and Joseph, D.A. Beyond tandem repeats: complex pattern structures and distant regions of similarity. Bioinformatics, 2002, S18: 31-37.
    • (2002) Bioinformatics , vol.S18 , pp. 31-37
    • Hauth, A.M.1    Joseph, D.A.2
  • 113
    • 0037423834 scopus 로고    scopus 로고
    • Key-string segmentation algorithm and higher-order repeat 16mer (54 copies) in human alpha satellite DNA in chromosome 7
    • Rosandić, M., Paar, V., Basar, I. Key-string segmentation algorithm and higher-order repeat 16mer (54 copies) in human alpha satellite DNA in chromosome 7. J. Theor. Biol., 2003, 221: 29-37.
    • (2003) J. Theor. Biol , vol.221 , pp. 29-37
    • Rosandić, M.1    Paar, V.2    Basar, I.3
  • 114
    • 0041336763 scopus 로고    scopus 로고
    • Key-string algorithm- Novel approach to computational analysis of repetitive sequences in human centromeric DNA
    • Rosandić, M., Paar, V., Glunčić, M., Basar, I., Pavin, N. Key-string algorithm- Novel approach to computational analysis of repetitive sequences in human centromeric DNA. Croat. Med. J., 2003, 44: 386-406.
    • (2003) Croat. Med. J , vol.44 , pp. 386-406
    • Rosandić, M.1    Paar, V.2    Glunčić, M.3    Basar, I.4    Pavin, N.5
  • 115
    • 16344365264 scopus 로고    scopus 로고
    • ColorHOR - novel graphical algorithm for fast scan of alpha satellite higher-order repeats and HOR annotation for GenBank sequence of human genome
    • Paar, V., Pavin, N., Rosandić, M., Glunčić M, Basar I, Pezer R. and Durajlija Žinić, S. ColorHOR - novel graphical algorithm for fast scan of alpha satellite higher-order repeats and HOR annotation for GenBank sequence of human genome. Bioinformatics, 2005, 21: 846-852.
    • (2005) Bioinformatics , vol.21 , pp. 846-852
    • Paar, V.1    Pavin, N.2    Rosandić, M.3    Glunčić, M.4    Basar, I.5    Pezer, R.6    Durajlija Žinić, S.7
  • 116
    • 33751234931 scopus 로고    scopus 로고
    • CENP-B box and pJα sequence distribution in human alpha satellite higher-order repeats (HOR)
    • Rosandić, M., Paar, V., Basar, I., Glunčić, M., Pavin, N. and Pilaš, I. CENP-B box and pJα sequence distribution in human alpha satellite higher-order repeats (HOR). Chromosome Res., 2006, 14: 735-753.
    • (2006) Chromosome Res , vol.14 , pp. 735-753
    • Rosandić, M.1    Paar, V.2    Basar, I.3    Glunčić, M.4    Pavin, N.5    Pilaš, I.6
  • 118
    • 0030879476 scopus 로고    scopus 로고
    • Site-specific base deletions in human alpha-satellite monomer DNAs are associated with regularly distributed CENP-B boxes
    • Yoda K, Okazaki T (1997) Site-specific base deletions in human alpha-satellite monomer DNAs are associated with regularly distributed CENP-B boxes. Chromosome Res 5: 207-211.
    • (1997) Chromosome Res , vol.5 , pp. 207-211
    • Yoda, K.1    Okazaki, T.2
  • 119
    • 0037049465 scopus 로고    scopus 로고
    • CENP-B box is required for the novo centromere chromatin assembly on human alphoid DNA
    • Ohzeki, J., Nakano, M., Okada, T. and Matsumoto, H. CENP-B box is required for the novo centromere chromatin assembly on human alphoid DNA. J. Cell Biol., 2002, 159: 765-775.
    • (2002) J. Cell Biol , vol.159 , pp. 765-775
    • Ohzeki, J.1    Nakano, M.2    Okada, T.3    Matsumoto, H.4
  • 120
    • 0024442796 scopus 로고
    • A human centromere antigen (CENP-B) interacts with a short specific sequence in alphoid DNA, a human centromeric satellite
    • Masumoto, H., Masukata, H., Muro, Y., Nozaki, N. and Okazaki, T. A human centromere antigen (CENP-B) interacts with a short specific sequence in alphoid DNA, a human centromeric satellite. J. Cell. Biol., 1989, 109: 1963-1973.
    • (1989) J. Cell. Biol , vol.109 , pp. 1963-1973
    • Masumoto, H.1    Masukata, H.2    Muro, Y.3    Nozaki, N.4    Okazaki, T.5
  • 121
    • 0026599841 scopus 로고
    • Centromere protein B assembles human centromeric alpha satellite DNA at 17-bp sequence, CENP-B box
    • Muro, Y., Masumoto, H., Yoda, K., Nozaki, N., Ohashi, M. and Okazaki, T. Centromere protein B assembles human centromeric alpha satellite DNA at 17-bp sequence, CENP-B box. J. Cell. Biol., 1992, 116: 585-596.
    • (1992) J. Cell. Biol , vol.116 , pp. 585-596
    • Muro, Y.1    Masumoto, H.2    Yoda, K.3    Nozaki, N.4    Ohashi, M.5    Okazaki, T.6
  • 122
    • 0029783725 scopus 로고    scopus 로고
    • Centromere protein B of African green monkey cells: Gene structure, cellular expression and centromeric localization
    • Yoda, K., Nakamura, T., Masumoto, H. et al. Centromere protein B of African green monkey cells: gene structure, cellular expression and centromeric localization. Mol. Cell. Biol., 1996, 16: 5169-5177.
    • (1996) Mol. Cell. Biol , vol.16 , pp. 5169-5177
    • Yoda, K.1    Nakamura, T.2    Masumoto, H.3
  • 123
    • 0031720004 scopus 로고    scopus 로고
    • In vitro assembly of the CENP-B/ alpha satellite DNA/core histone complex: CENP-B causes nucleosome positioning
    • Yoda, K., Ando, S., Okuda, A., Kikuchi, A. and Okazaki, T. In vitro assembly of the CENP-B/ alpha satellite DNA/core histone complex: CENP-B causes nucleosome positioning. Genes Cells, 1998, 3: 533-548.
    • (1998) Genes Cells , vol.3 , pp. 533-548
    • Yoda, K.1    Ando, S.2    Okuda, A.3    Kikuchi, A.4    Okazaki, T.5
  • 124
    • 16644389418 scopus 로고    scopus 로고
    • The role of CENP-B and alpha-satellite DNA: De novo assembly and epigenetic maintenance of human centromeres
    • Masumoto, H., Nakano, M. and Ohzeki, J. The role of CENP-B and alpha-satellite DNA: de novo assembly and epigenetic maintenance of human centromeres. Chromosome Res., 2004, 12: 543-556.
    • (2004) Chromosome Res , vol.12 , pp. 543-556
    • Masumoto, H.1    Nakano, M.2    Ohzeki, J.3
  • 125
    • 13744254178 scopus 로고    scopus 로고
    • Rapid creation of BAC-based human artificial chromosome vectors by transposition with synthetic alpha-satellite arrays
    • Basu, J., Stromberg, G., Compitello, G., Willard, H.F. and Van Bokkelen, G. Rapid creation of BAC-based human artificial chromosome vectors by transposition with synthetic alpha-satellite arrays. Nucleic Acids Res., 2005, 33: 587-596.
    • (2005) Nucleic Acids Res , vol.33 , pp. 587-596
    • Basu, J.1    Stromberg, G.2    Compitello, G.3    Willard, H.F.4    Van Bokkelen, G.5
  • 126
    • 14044257457 scopus 로고    scopus 로고
    • Chromosomal dynamics of human neocentromere formation
    • Warburton, P.E. Chromosomal dynamics of human neocentromere formation. Chromosome Res., 2004, 12: 617-626.
    • (2004) Chromosome Res , vol.12 , pp. 617-626
    • Warburton, P.E.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.