Construction of YAC-based mammalian artificial chromosomes

Nature Biotechnology

Volumn 16, Issue 5, 1998, Pages 431-439

  Ikeno, Masashi ^a,b,c   Grimes, Brenda ^a,b,c   Okazaki, Tuneko ^a,b,c   Nakano, Megumi ^a,b,c   Saitoh, Kaori ^a,b,c   Hoshino, Harumi ^a,b,c   McGill, Niolette I ^a,b,c   Cooke, Howard ^a,b,c   Masumoto, Hiroshi ^a,b,c  

^a NAGOYA UNIVERSITY   (Japan)

^b WESTERN GENERAL HOSPITAL   (United Kingdom)

^c FUJITA HEALTH UNIVERSITY   (Japan)

Author keywords

Alpha satellite DNA; CENP B boxes

Indexed keywords

DEOXYRIBONUCLEOPROTEIN; REPETITIVE DNA; SATELLITE DNA;

ARTICLE; CENTROMERE; CHROMOSOME SEGREGATION; CHROMOSOME STRUCTURE; EXPRESSION VECTOR; HUMAN; HUMAN CELL; MAMMAL; MOLECULAR CLONING; NONHUMAN; PRIORITY JOURNAL; TELOMERE; YEAST ARTIFICIAL CHROMOSOME;

EID: 0031921127     PISSN: 10870156     EISSN: None     Source Type: Journal    
DOI: 10.1038/nbt0598-431     Document Type: Article

References (48)

1. Murray, A.W. and Szostak, J.W. 1983. Construction of artificial chromosomes in yeast. Wafure 305:189-193.
2. Burke, D.T., Carle, G.R, and Oison, M.V. 1987. Cloning of large segments of exogenous DNA into yeast by means of artificial chromosome vectors. Science 236:806-812.
3. Jakobovits, A., Moore, A.L, Green, L.L., Vergara, G.J., Maynard-Currie, C.E., Austin. H.A., and Klapholz, S. 1993. Germ-line transmission and expression of a human-derived yeast artificial chromosome. Nature 362:255-258.
4. Hadlaczky, G., Praznovzky, T., Cserpan, I., Kereso, J., Peterfy, M., Kelemen, l. et al. 1991. Centromere formation in mouse cells cotransformed with human DNA and a dominant marker gene. Proc. WatJ. Acad. Sci. USA 88:8106-8110.
5. Sun, T.-Q., Fenstermacher, D.A., and Vos, J.M.H. 1994. Human artificial episomal chromosomes for cloning large DNA fragments in human cells. Nat. Gen. 8:33-41.
6. Farr, C.J., Bayne, R.A.L., Kipling, D., Mills, W., Critcher, R., and Cooke, H.J. 1995. Generation of a human X-derived minichromosome using telomere-associated chromosome fragmentation. EMBO J. 14:5444-5454.
7. Heller, R., Brown, K.E., Burgtorf, C., and Brown, W.R.A. 1996. Mini-chromosome derived from the human Y chromosome by telomere directed chromosome breakage. Proc. WatJ. Acad. Sci. USA 93:7125-7130.
8. Brown, W.R.A. 1989. Molecular cloning of human telmomeres in yeast. Nature 338:774-776.
9. Cross, S.H., Allshire, R.C., McKay, S.J., McGill, N.I., and Cooke, H.J. 1989. Cloning of human telomeres by complementation in yeast. Nature 338:771-774.
10. Farr, C.J., Fantes, J., Goodfellow, P., and Cooke, H.J. 1991. Functional réintroduction of human telomeres into mammalian cells. Proc. WatJ. Acad. Sd. USA 88:7006-7010.
11. Barnett, M.A., Buckle, V.J., Evans, E.P., Porter, A.C.G., Rout, D., Smith, A.G., and Brown, W.R.A. 1993. Telomere directed fragmentation of mammalian chromosomes. Nucl. Acids Res. 21:27-36
12. Willard, H.F, and Waye, J.S. 1987. Hierarchical order in chromosome-specific human alpha satellite DNA. Trends Genef. 3:192-198.
13. Choo, K.H., Vlssel, B., Nagy, A., Earle, E., and Kalitsis, P. 1991. A survey of the genomic distribution of alpha satellite DNA on all the human chromosomes, and derivation of a new consensus sequence. Nucleic Acids Res. 19:1179-1182.
14. Masumoto, H., Sugimoto, K., and Okazaki, T. 1989. Alphoid satellite DNA is tightly associated with centromere antigens in human chromosome throughout the cell cell cycle. Exp. Cell Res. 181:181-196.
15. Palmer, O.K., O'Day, K., Trong, H.L, Charbonneau, H., and Margolis, R.L. 1991. Purification of the centromere-specific protein CENP-A and demonstration that it is a distinctive histone. Proc. Natl. Acad. Sd. USA 88:3734-3738.
16. Masumoto, H., Masukata, H., Muro, Y., Nozaki, N., and Okazaki, T. 1989. A human centromere antigen (CENP-B) interacts with a short specific sequence in alphoid DNA, a human centromeric satellite. J. Cell Biol. 109:1963-1973.
17. Kitagawa, K., Masumoto, H., Ikeda, M., and Okazaki, T. 1995. Analysis of proteinDNA and protein-protein interactions of centromere protein B (CENP-B) and properties of the DNA-CENP-B complex in the cell cycle. Mol. Cell. Biol. 15:1602-1612.
18. Saitoh, H., Tomkiel, J., Cooke, C.A., Ratire, H., Maurer, M., Rothfield, N.F., and Earnshaw. W.C. 1992. CENP-C, an autoantigen in scleroderma, is a component of the human inner kinetochore plate. Cell 70:115-125.
19. Yen, T.J., Compton, D.A., Wise, D., Zinkowski, R.P., Brinkley, B.R., Earnshaw, W.C., and Cleveland, D.W. 1991. CENP-E, a novel human centromere-associat-ed protein required for progression from metaphase to anaphase. EMBO J. 10:1245-1254.
20. Harrington, J.J., Van Bokkelen, G., Mays, R.W., Gustashaw, K., and Willard, H.F. 1997. Formation of de novo centromeres and construction of first-generation human artificial microchromosomes. Nat. Genet. 4:345-355.
21. Neil, D.L, Villasante, A., Fisher, R.B., Vetrie, D., Cox, B., and Tyler-Smith, C. 1990. Structural instability of human tandemly repeated DNA sequences cloned in yeast artificial chromosome vectors. Nucleic Acids Res. 18:1421 -1428.
22. Kouprina, N., Eldarov, M., Moyzis, Ft., Resnick, M., and Larionov, V. 1994. A model system to assess the integrity of mammalian YACs during transformation and propagation in yeast. Genomics 21:7-17.
23. Ikeno, M., Masumoto, H., and Okazaki, T. 1994. Distribution of CENP-B boxes reflected in CREST centromere antigenic sites on long-range a satellite DNA arrays of human chromosome 21. Hum. Mol. Genet. 3:1245-1257.
24. Pavan, W.J., Mieter, P., and Reeves, R.H. 1990. Generation of deletion derivatives by targeted transformation of human-derived yeast artificial chromosomes. Proc. WarJ. Acad. Sci. USA 87:1300-1304.
25. Adzuma, K., Ogawa, T., and Ogawa, H. 1984. Primary structure of the RAD52 gene in Saccharomyces cerevisiae. Mol. Cell. Biol. 4:2735-2744.
26. Taylor, S.S., Larin, Z., and Tyler-Smith, C. 1996. Analysis of extrachromosomal structures containing human centromeric alphoid satellite DNA sequences in mouse cells. Chromosoma 105:70-81.
27. Earnshaw, W.C., Ratrie, H., and Stellen, G. 1989. Visualization of centromere proteins CENP-B and CENP-C on a stable dicentric chromosome in cytological spreads. Chromosoma 98:1-12.
28. Sullivan, B.A. and Schwartz, S. 1995. Identification of centromeric antigens in dicentric Robertsonian translocations: CENP-C and CENP-E are necessary components of functional centromeres. Hum. Mol. Genet. 4:2189-2197.
29. Krysan, P.J., Smith, J.G., and Calos, M.P. 1993. Autonomous replication in human cells of rnultimers of specific human and bacterial DNA sequences. Mol. Cell. Biol. 13:2688-2696.
30. Featherstone, T. and Huxley, C. 1993. Extrachromosomal maintenance and amplification of yeast artificial chromosome DNA in mouse cells. Genomics 17:267-278.
31. Muro, Y., Masumoto, H., Yoda, K., Nozaki, N., Ohashi, M., and Okazaki, T. 1992. Centromere protein B assembles human centromeric a-satellite DNA at the 17 bp sequence, CENP-B box. J. Cell Biol. 116:585-596.
32. Masumoto, H., Yoda, K., Ikeno, M., Kitagawa, K., Muro, Y., and Okazaki, T. 1993. Properties of CENP-B and its target sequence in a satellite DNA, pp. 31-43 in Chromosome segregation and aneuploldy. Vig, B.K. (ed.). NATO ASI Series, Springer Verlag, Germany.
33. Haaf, T., Mater, A.G., Wienberg, J., and Ward, D.C. 1995. Presence and abundance of CENP-B box sequences in great ape subsets of primate-specific alphasatellite DNA. J. Mol. Evol. 41:487-491.
34. Broccoli, D., Miller, O.J., and Miller, D.A. 1990. Relationship of mouse minor satellite DNA to centromere activity. Cytogenet. Cell Genet. 54:182-186.
35. du Sart, D., Cancilla, M.R., Earle, E., Mao, J., Saffery, R., Tainton, K.M. et al. 1997. A functional neo-centromere formed through activation of a latent human centromere and consisting of non-alpha-satellite DNA. Waf. Genet. 16:144-153.
36. Steiner, N.C. and Clarke, L 1994. A novel epigenetic effect after centromere function in fission yeast. Cell 79:865-874.
37. Raziuddin, A., Sarkar, F.H., Dutkowski, R., Shulman, L, Ruddle, F.H., and Gupta, S.L 1984. Receptors for human a and ßInterferon but not for t Interferon are specified by human chromosome 21. Proc. WaH. Acad. Sci. USA 84:5504-5508.
38. Kalitsis, P., Earle, E., Vissel, B., Shaffer, L.G., and Choo, K.H.A. 1993. A chromosome 13-specific human satellite I DNA subfamily with minor presence on chromosome 21: further studies on robertsonian translocations. Genomics 16:104-112.
39. Vissel, B., Nagy, A., and Choo, K.H.A. 1992. A satellite III sequence shared by human chromosome 13,14, and 21 that is contiguous with alpha satellite DNA. Cytogenet. Cell Genet. 61:81-86.
40. Ledbetter, S.A., Nelson, D.L, Warren, ST. and Ledbetter, D.H. 1990. Rapid isolation of DNA probes within specific chromosome region by interspersed repetitive sequence polymerase chain reaction. Genomics 6:475-481.
41. Smith, D.R., Smyth, A.R, Strauss, W.M., and Moir, D.T. 1993. Incorporation of copy-number control elements into yeast artificial chromosomes by targeted homologous recombination. Mamm. Genome 4:141-147.
42. Cross, S.H. Isolation and characterisation of human telomeres. (Ph.D. Thesis, University of Edinburgh, Scotland, 1989).
43. Shero, J.H., McCormick, M.K., Antonarakis, S., and Mieter, P. 1991. Yeast artificial chromosome vectors for efficient clone manipulation and mapping. Genomics 10:505-508.
44. Izumi, M., Yazawa, H., Kamakura, T, Yamaguchi, I., Endo, T., and Hanaoka, F. 1991. Blasticidin S-resistance gene (bsr): a novel selectable marker for mammalian cells. Exp. Cell Res. 197:229-233.
45. Schedl, A., Grimes, B., and Montoliu, L 1995. YAC-transfer by microinjection, pp. 281-306 in Methods in molecular biology. Markie, D. (ed.). Humana Press, Totowa, NJ.
46. Muramatsu, M., Yamamoto, O., Kishimoto, T.M.N., Kato, H., and Kominami, R. 1986. Structure and regulation of mammalian ribosomal RNA gene. Adv. Biophys. 21:217-227.
47. Lansdorp, P.M., Verwoerd, N.R, van de Rijke, F.M., Dragowska, V., Little, M.T., Dirks, R.W. et al. 1996. Heterogeneity in telomere length of human chromosomes. Hum. Mol. Genet. 5:685-691.
48. Trowell, H.E., Nagy, A., Vissel, B., and Choo. K.H.A. 1993. Long-range analyses of the centromeric regions of human chromosome 13,14and21: identification of a narrow domain containing two key centromeric DNA elements. Hum. Mol. Genet. 2:1639-1649.