Genetic and physical analyses of the centromeric and pericentromeric regions of human chromosome 5: Recombination across 5cen

Genomics

Volumn 56, Issue 3, 1999, Pages 274-287

  Puechberty, Jacques ^a   Laurent, Anne Marie ^a   Gimenez, Sylvie ^a   Billault, Alain ^b   Brun Laurent, Marie Elisabeth ^a   Calenda, Alphonse ^a   Marçais, Bertrand ^a   Prades, Catherine ^a   Ioannou, Panos ^c   Yurov, Yuri ^a   Roizès, Gérard ^a  

^a INSTITUTE OF HUMAN GENETICS   (France)

^b FONDATION JEAN DAUSSET CEPH   (France)

^c ROYAL CHILDREN'S HOSPITAL   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

RESTRICTION ENDONUCLEASE;

ARTICLE; CENTROMERE; CHROMOSOME 19; CHROMOSOME 5; GENETIC POLYMORPHISM; GENETIC RECOMBINATION; GENETIC VARIABILITY; HUMAN; HUMAN CELL; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PULSED FIELD GEL ELECTROPHORESIS; SEQUENCE TAGGED SITE; YEAST ARTIFICIAL CHROMOSOME;

EID: 0033558974     PISSN: 08887543     EISSN: None     Source Type: Journal    
DOI: 10.1006/geno.1999.5742     Document Type: Article

References (47)

1. Archidiacono N., Antonacci R., Marzella R., Finelli P., Lonoce A., Rocchi M. Comparative mapping of human alphoid sequences in great apes using fluorescencein situ. Genomics. 25:1995;477-484.
2. Bellis M., Pagès M., Roizès G. Electrophorèse de l'ADN en champ pulsé Rev. Inst. Pasteur Lyon. 20:1987;45-55.
3. Broman K. W., Murray J. C., Sheffield V. C., White R. L., Weber J. L. Comprehensive human genetic maps: Individual and sex-specific variation in recombination. Am. J. Hum. Genet. 63:1998;861-869.
4. Burke D. T., Carle G. F., Olson M. W. W. Cloning of large segment of exogenous DNA into yeast by means of artificial chromosome vectors. Science. 236:1987;806-812.
5. Charlesworth B., Sniegowski P., Stephan W. The evolutionary dynamics of repetitive DNA in eukaryotes. Nature. 371:1994;215-220.
6. Choo K. H., Earle E., McQuillan C. A homologous subfamily of satellite III DNA on human chromosomes 14 and 22. Nucleic Acids Res. 18:1990;5641-5648.
7. Choo K. H. A. Why is centromere so cold. Genome Res. 8:1998;81-82.
8. Dib C., Fauré S., Fizames C., Samson D., Drouot N., Vignal A., Millasseau P., Marc S., Hazan J., Seboun E., Lathrop M., Gyapay G., Morissette J., Weissenbach J. A comprehensive genetic map of the human genome based on 5,264 microsatellites. Nature. 380:1996;152-154.
9. du Sart D., Cancilla M. R., Earle E., Mao J., Saffery R., Tainton K. M., Kalitsis P., Martyn J., Barry A. E., Choo K. H. A. A functional neo-centromere formed through activation of a latent human centromere and consisting of non-alpha-satellite DNA. Nat. Genet. 16:1997;144-153.
10. Finelli P., Antonacci R., Marzella R., Lonoce A., Archidiacono N., Rocchi M. Structural organization of multiple alphoid subsets coexisting on human chromosomes 1, 4, 5, 7, 9, 15, 18 and 19. Genomics. 38:1996;325-330.
11. Gyapay G., Schmitt K., Fizames C., Jones H., Vega-Czarny N., Spillett D., Muselet D., Prud'homme J. F., Dib C., Auffray C., Morissette J., Weissenbach J., Goodfellow P. N. A radiation hybrid map of the human genome. Hum. Mol. Genet. 5:1996;339-346.
12. Hudson T. J., Stein L. D., Gerety S. S., Ma J., Castle A. B., Silva J., Slonim D. K., Baptista R., Kruglyak L., Xu S. H., Colbert A., Rosenberg C., Reeve-Daly M. P., Rozen S., Hui L., Wu X., Vestergaard C., Wilson K., Bae J., Maitra S., Ganiatsas S., Evans C., DeAngelis M., Ingalls K., Nahf R., Horton L., Oskin M., Collymore A., Ye W., Kouyoumjian V., Zernsteva I., Tarn J., Devine R., Courtney D., Renaud M., Nguyen H., O'Connor T., Fizames C., Faure S., Gyapay G., Dib C., Morissette J., Orlin J., Birren B., Goodman N., Weissenbach J., Hawkins T., Foote S., Page D., Lander E. A STS-based map of the human genome. Science. 270:1995;1945-1954.
13. Hulsebos T., Schonk D., van Dalen I., Coerwinkel-Driessen M., Schepens J., Ropers H. H., Wieringa B. Isolation and characterization of alphoid DNA sequences specific for the pericentric regions of chromosomes 4, 5, 9 and 19. Cytogenet. Cell Genet. 47:1988;144-148.
14. Ioannou P. A., Amemiya C. T., Garnes J., Kroisel P. M., Shizuya H., Chen C., Batzer M. A., de Jong P. J. A new bacteriophage P1-derived vector for the propagation of large human DNA fragments. Nat. Genet. 6:1994;84-89.
15. Jackson M. S., See C. G., Mulligan L. M., Lauffart B. F. A 9.75-Mb map across the centromere of human chromosome 10. Genomics. 33:1996;258-270.
16. Jaspers M., Marynen P., Aly M. S., Cuppens H., Hilliker C., Cassiman J. J. Localization of the gene encoding the alpha 2 subunit of the human VLA-2 receptor to chromosome 5q23-31. Somat. Cell Mol. Genet. 17:1991;505-511.
17. Jones H. B. Estimating physical distances from radiation hybrid mapping data. Genomics. 43:1997;258-266.
18. Karpen G. H., Allshire R. C. The case for epigenetic effects on centromere identity and function. Trends Genet. 13:1997;489-496.
19. Kudla B., Nicolas A. A multisite integrative cassette for the yeastSaccharomyces cerevisiae. Gene. 119:1992;49-56.
20. Laurent A. M., Marçais B., Muleris M., Roizès G. A rapid and simple method to isolate and characterize highly polymorphic markers from the centromeric regions of the human chromosomes. Nucleic Acids Res. 22:1994;194-199.
21. Laurent A. M., Puechberty J., Prades C., Gimenez S., Roizès G. Site-specific retrotransposition of L1 elements within human alphoid satellite sequences. Genomics. 46:1997;127-132.
22. Laurent A. M., Puechberty J., Prades C., Roizès G. Informative genetic polymorphic markers within the centromeric regions of human chromosomes 17 (D17S2205) and 11 (D11S4975). Genomics. 52:1998;166-172.
23. Laurie D. A., Hulten M. A. Further studies on bivalent chiasma frequency in human males with normal karyotypes. Ann. Hum. Genet. 49:1985a;189-201.
24. Laurie D. A., Hulten M. A. Further studies on chiasma distribution and interference in human male. Ann. Hum. Genet. 49:1985b;203-214.
25. Lee C., Wevrick R., Fisher R. B., Ferguson-Smith M. A., Lin C. C. Human centromeric DNAs. Hum. Genet. 100:1997;291-304.
26. Mahtani M. M., Willard H. F. Physical and genetic mapping of the human X chromosome centromere: Repression of recombination. Genome Res. 8:1998;100-110.
27. Marçais B., Bellis M., Gérard A., Pagès M., Boublik Y., Roizès G. Structural organization and polymorphism of the alpha satellite DNA sequences of chromosomes 13 and 21 as revealed by pulse field gel electrophoresis. Hum. Genet. 86:1991;311-316.
28. Marçais B., Laurent A. M., Charlieu J. P., Roizès G. Organization of the variant domains of a satellite DNA on human chromosome 21. J. Mol. Evol. 37:1993;171-178.
29. Marzella R., Viggiano L., Ricco A. S., Tanzariello A., Fratello A., Archidiacono N., Rocchi M. A panel of radiation hybrids and YAC clones specific of human chromosome 5. Cytogenet. Cell Genet. 77:1997;232-237.
30. Matera A. G., Baldini A., Ward D. C. An oligonucleotide probe specific to the centromeric region of chromosome 5. Genomics. 18:1993;729-731.
31. McPherson J. D., Apostol B., Wagner-McPherson C. B., Hakim S., Del Mastro R. G., Aziz N., Baer E., Gonzales G., Krane M. C., Markovich R., Masny P., Ortega M., Wu J., Vujicic M., Church D. M., Segal A., Grady D. L., Moyzis R. K., Spence M. A., Lovett M., Wasmuth J. J. A radiation hybrid map of human chromosome 5 with integration of cytogenetic, genetic and transcript maps. Genome Res. 7:1997;897-909.
32. Melmer G., Sherrington R., Mankoo B., Kalsi G., Curtis D., Gurling H. M. A cosmid clone for the 5HT1A receptor (HTR1A) reveals aTaq. Genomics. 11:1991;767-769.
33. Mohrenweiser H. W., Tsujimoto S., Gordon L., Olsen A. S. Regions sex-specific hypo- and hyper-recombination identified through integration of 180 genetic markers into the metric physical map of human chromosome 19. Genomics. 47:1998;153-162.
34. Nakhai B., Nielsen D. A., Linnoila M., Goldman D. Two statistically occurring amino acid substitutions in the human 5-HT 1A receptor: Glycine 22 to serine 22 and isoleucine 28 to valine 28. Biochem. Biophys. Res. Commun. 210:1995;530-536.
35. Prades C., Laurent A. M., Yurov Y., Puechberty J., Roizès G. A 19-allele polymorphic marker within the centromere of human chromosome 5. Cytogenet. Cell Genet. 72:1996;69-71.
36. Riley J., Butler R., Ogilvie D., Finniear R., Jenner D., Powell S., Anand R., Smith J. C., Markham A. F. A novel, rapid method for the isolation of terminal sequences from yeast artificial chromosomes (YAC) clones. Nucleic Acids Res. 18:1990;2887-2890.
37. Sambrook J., Fritsch E. F., Maniatis T. Molecular Cloning: A Laboratory Manual. 1989;Cold Spring Harbor Laboratory Press, Cold Spring Harbor.
38. Tagarro I., Wiegant J., Raap A. H., Gonzales-Aguilera J. J., Fernandez-Peralta A. M. Assignment of human satellite 1 DNA as revealed by fluorescentin situ. Hum. Genet. 93:1994a;125-128.
39. Tagarro I., Fernandez-Peralta A. M., Gonzales-Aguilera J. J. Chromosomal localization of human satellites 2 and 3 by a FISH method using oligonucleotides as probes. Hum. Genet. 93:1994b;383-388.
40. Tanizawa Y., Riggs A. C., Dagogo-Jack S., Vaxillaire M., Froguel P., Liu L., Donis-Keller H., Permutt M. A. Isolation of the human LIM/homeodomain gene islet-1 and identification of a simple sequence repeat polymorphism. Diabetes. 43:1994;935-941.
41. Voullaire L. E., Slater H. R., Petrovic V., Choo K. H. A. A functional marker centromere with no detectable alpha-satellite, satellite III, or CENP-B protein: Activation of a latent centromere. Am. J. Hum. Genet. 52:1993;1153-1163.
42. Warburton P. E., Waye J. S., Willard H. F. Non random localization of recombination events in human alpha satellite repeat unit variants: Implications for higher-order structural characteristics within centromeric heterochromatin. Mol. Cell Biol. 13:1993;6520-6529.
43. Waye J. S., Willard H. F. Molecular analysis of a deletion polymorphism in alpha satellite of human chromosome 17: Evidence of homologous unequal crossing-over and subsequent fixation. Nucleic Acids Res. 14:1986a;6915-6927.
44. Waye J. S., Willard H. F. Structure, organization, and sequence of alpha satellite DNA from human chromosome 17: Evidence for evolution by unequal crossing-over and an ancestral pentamer repeat shared with the human X chromosome. Mol. Cell Biol. 6:1986b;3156-3165.
45. Wevrick R., Willard V. P., Willard H. F. Structure of DNA near long tandem arrays of alpha satellite DNA at the centromere of chromosome 7. Genomics. 14:1992;912-923.
46. Wöhr G., Fink T., Assum G. A palindromic structure in the pericentromeric region of various chromosomes. Genome Res. 6:1996;267-279.
47. Yamamoto M., Miklos G. L. G. Genetic studies on heterochromatin inDrosophila melanogaster. Chromosoma. 66:1978;71-98.