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Volumn 3, Issue , 2007, Pages

Genome-wide transcriptional plasticity underlies cellular adaptation to novel challenge

Author keywords

Adaptation; Cellular metabolism; Expression arrays; Plasticity; Transcriptional response

Indexed keywords

GALACTOSE; GLUCOSE; HISTIDINE; SACCHAROMYCES CEREVISIAE PROTEIN; TRANSCRIPTION FACTOR;

EID: 34247487796     PISSN: 17444292     EISSN: 17444292     Source Type: Journal    
DOI: 10.1038/msb4100147     Document Type: Article
Times cited : (111)

References (41)
  • 1
    • 17144376468 scopus 로고    scopus 로고
    • Transient responses and adaptation to steady state in eukaryotic gene regulation system
    • Braun E, Brenner N (2004) Transient responses and adaptation to steady state in eukaryotic gene regulation system. Phys Biol 1: 67
    • (2004) Phys Biol , vol.1 , pp. 67
    • Braun, E.1    Brenner, N.2
  • 2
    • 0033118209 scopus 로고    scopus 로고
    • Glucose repression in yeast
    • Carlson M (1999) Glucose repression in yeast. Curr Opin Microbiol 2: 202
    • (1999) Curr Opin Microbiol , vol.2 , pp. 202
    • Carlson, M.1
  • 3
    • 22744439568 scopus 로고    scopus 로고
    • Evolution at two levels: On genes and form
    • Carroll SB (2005) Evolution at two levels: on genes and form. PLoS Biol 3: 1159-1166
    • (2005) PLoS Biol , vol.3 , pp. 1159-1166
    • Carroll, S.B.1
  • 8
    • 0033578424 scopus 로고    scopus 로고
    • Systematic changes in gene expression patterns following adaptive evolution in yeast
    • Ferea TL, Botstein D, Brown PO, Rosenzweig RF (1999) Systematic changes in gene expression patterns following adaptive evolution in yeast. Proc Nat Acad Sci USA 96: 9721
    • (1999) Proc Nat Acad Sci USA , vol.96 , pp. 9721
    • Ferea, T.L.1    Botstein, D.2    Brown, P.O.3    Rosenzweig, R.F.4
  • 9
    • 25844495901 scopus 로고    scopus 로고
    • Parallel adaptive evolution cultures of Escherichia coli lead to convergent growth phenotypes with different gene expression states
    • Fong SS, Joyce AR, Palsson BO (2005) Parallel adaptive evolution cultures of Escherichia coli lead to convergent growth phenotypes with different gene expression states. Genome Res 15: 1365-1372
    • (2005) Genome Res , vol.15 , pp. 1365-1372
    • Fong, S.S.1    Joyce, A.R.2    Palsson, B.O.3
  • 12
    • 0001634436 scopus 로고
    • General and pathway-specific regulatory mechanisms controlling the synthesis of amino acid biosynthesis enzymes in Saccharomyces cerevisiae
    • Jones EW, Pringle JR, Broach JR eds, Cold Spring Harbor, Woodbury, NY: Cold Spring Harbor Laboratory Press
    • Hinnebusch AG (1992) General and pathway-specific regulatory mechanisms controlling the synthesis of amino acid biosynthesis enzymes in Saccharomyces cerevisiae. In The Molecular and Cellular Biology of the Yeast Saccharomyces Gene Expression, Jones EW, Pringle JR, Broach JR (eds). Cold Spring Harbor, Woodbury, NY: Cold Spring Harbor Laboratory Press
    • (1992) The Molecular and Cellular Biology of the Yeast Saccharomyces Gene Expression
    • Hinnebusch, A.G.1
  • 15
    • 0346095291 scopus 로고    scopus 로고
    • Principles of transcriptional control in the metabolic network of Saccharomyces cerevisiae
    • Ihmels J, Levy R, Barkai N (2004) Principles of transcriptional control in the metabolic network of Saccharomyces cerevisiae. Nat Biotechnol 22: 86-92
    • (2004) Nat Biotechnol , vol.22 , pp. 86-92
    • Ihmels, J.1    Levy, R.2    Barkai, N.3
  • 16
    • 0036141992 scopus 로고    scopus 로고
    • Relating whole-genome expression data with protein-protein interactions
    • Jansen R, Greenbaum D, Gerstein M (2002) Relating whole-genome expression data with protein-protein interactions. Genome Res 12: 37-46
    • (2002) Genome Res , vol.12 , pp. 37-46
    • Jansen, R.1    Greenbaum, D.2    Gerstein, M.3
  • 17
    • 0033772765 scopus 로고    scopus 로고
    • Regulatory networks revealed transcriptional profiling of damaged Saccharomyces cerevisiae cell: Rpn4 links base excision repair with proteasomes
    • Jelinsky SA, Estep P, Church GM, Samson LD (2000) Regulatory networks revealed transcriptional profiling of damaged Saccharomyces cerevisiae cell: Rpn4 links base excision repair with proteasomes. Mol Cell Biol 20: 8157-8167
    • (2000) Mol Cell Biol , vol.20 , pp. 8157-8167
    • Jelinsky, S.A.1    Estep, P.2    Church, G.M.3    Samson, L.D.4
  • 18
    • 0028230982 scopus 로고
    • Multiple mechanisms provide rapid and stringent glucose repression of GAL gene expression Saccharomyces cerevisiae
    • Johnston M, Flick JS, Pexton T (1994) Multiple mechanisms provide rapid and stringent glucose repression of GAL gene expression Saccharomyces cerevisiae. Mol Cell Biol 14: 3834
    • (1994) Mol Cell Biol , vol.14 , pp. 3834
    • Johnston, M.1    Flick, J.S.2    Pexton, T.3
  • 19
    • 15044353444 scopus 로고    scopus 로고
    • Transcription control reprogramming in genetic backup circuits
    • Kafri R, Bar-Even A, Pilpel Y (2005) Transcription control reprogramming in genetic backup circuits. Nat Genet 37: 295-299
    • (2005) Nat Genet , vol.37 , pp. 295-299
    • Kafri, R.1    Bar-Even, A.2    Pilpel, Y.3
  • 21
    • 33646200155 scopus 로고    scopus 로고
    • Expression dynamics of a cellular metabolic network
    • Kharchenko P, Church GM, Vitkup D (2005) Expression dynamics of a cellular metabolic network. Mol Syst Biol 1: 2005.0016
    • (2005) Mol Syst Biol , vol.1 , pp. 0016
    • Kharchenko, P.1    Church, G.M.2    Vitkup, D.3
  • 24
    • 18144415477 scopus 로고    scopus 로고
    • Dynamical remodeling of the transcriptome during short-term anaerobiosis in Saccharomyces cerevisiae: Different response and role of Msn2 and/or Msn4 and other factors in galactose and glucose media
    • Lai LC, Kosorukoff AL, Burke PV, Kwast KE (2005) Dynamical remodeling of the transcriptome during short-term anaerobiosis in Saccharomyces cerevisiae: different response and role of Msn2 and/or Msn4 and other factors in galactose and glucose media. Mol Cell Biol 25: 4075-4091
    • (2005) Mol Cell Biol , vol.25 , pp. 4075-4091
    • Lai, L.C.1    Kosorukoff, A.L.2    Burke, P.V.3    Kwast, K.E.4
  • 25
    • 4644326931 scopus 로고    scopus 로고
    • Genomic analysis of regulatory network dynamics reveals large topological changes
    • Luscombe NM, Babu MM, Yu H, Snyder M, Telchmann SA, Gerstein M (2004) Genomic analysis of regulatory network dynamics reveals large topological changes. Nature 431: 308-312
    • (2004) Nature , vol.431 , pp. 308-312
    • Luscombe, N.M.1    Babu, M.M.2    Yu, H.3    Snyder, M.4    Telchmann, S.A.5    Gerstein, M.6
  • 26
    • 0031730097 scopus 로고    scopus 로고
    • Marton MJ, DeRisi JL, Bennet HA, Iyer VR, Meyer MR, Roberts CJ, stoughton R, Burchard J, Slade D, Dai Jr H, DEB, Hartwell LH, Brown PO, Friend SH (1998) Drug target validation and identification of secondary drug target effects using DNA microarrays. Nature Med 4: 1293-1301
    • Marton MJ, DeRisi JL, Bennet HA, Iyer VR, Meyer MR, Roberts CJ, stoughton R, Burchard J, Slade D, Dai Jr H, DEB, Hartwell LH, Brown PO, Friend SH (1998) Drug target validation and identification of secondary drug target effects using DNA microarrays. Nature Med 4: 1293-1301
  • 27
    • 33748324641 scopus 로고    scopus 로고
    • Transgeneration memory of stress in plants
    • Molinier J, Ries G, Zipfel C, Hohn B (2006) Transgeneration memory of stress in plants. Nature 442: 1046-1049
    • (2006) Nature , vol.442 , pp. 1046-1049
    • Molinier, J.1    Ries, G.2    Zipfel, C.3    Hohn, B.4
  • 28
    • 0034973590 scopus 로고    scopus 로고
    • Transcriptional profiling shows that Gcn4p is a master regulator of gene expression during amino acid starvation in yeast
    • Natarajan K, Meyer MR, Jackson BM, Slade D, Roberts C, Hinnebusch AG, Marton MJ (2001) Transcriptional profiling shows that Gcn4p is a master regulator of gene expression during amino acid starvation in yeast. Mol Cell Biol 21: 4347-4368
    • (2001) Mol Cell Biol , vol.21 , pp. 4347-4368
    • Natarajan, K.1    Meyer, M.R.2    Jackson, B.M.3    Slade, D.4    Roberts, C.5    Hinnebusch, A.G.6    Marton, M.J.7
  • 29
    • 0037047068 scopus 로고    scopus 로고
    • The genome-wide expression response to telomerase deletion in Saccharomyces cerevisiae
    • Nautiyal S, DeRisi JL, Blackburn EH (2002) The genome-wide expression response to telomerase deletion in Saccharomyces cerevisiae. Proc Nat Acad Sci USA 99: 9316-9321
    • (2002) Proc Nat Acad Sci USA , vol.99 , pp. 9316-9321
    • Nautiyal, S.1    DeRisi, J.L.2    Blackburn, E.H.3
  • 30
    • 0033518256 scopus 로고    scopus 로고
    • Synexpression groups in eukaryotes
    • Niehrs C, Pollet B (1999) Synexpression groups in eukaryotes. Nature 402: 483-487
    • (1999) Nature , vol.402 , pp. 483-487
    • Niehrs, C.1    Pollet, B.2
  • 31
    • 0037941585 scopus 로고    scopus 로고
    • Module networks: Identifying regulatory modules and their condition-specific regulators from gene expression data
    • Segal E, Shapira M, Regev A, Pe'er D, Botstein D, Koller D, Friedman N (2003) Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data. Nat Genet 34: 166-176
    • (2003) Nat Genet , vol.34 , pp. 166-176
    • Segal, E.1    Shapira, M.2    Regev, A.3    Pe'er, D.4    Botstein, D.5    Koller, D.6    Friedman, N.7
  • 32
    • 34247501471 scopus 로고    scopus 로고
    • SGD www.yeastgenome.org
    • SGD www.yeastgenome.org
  • 35
    • 33744463158 scopus 로고    scopus 로고
    • Synthetic gene recruitment reveals adaptive reprogramming of gene regulation in yeast
    • Stolovicki E, Dror T, Brenner N, Braun E (2006) Synthetic gene recruitment reveals adaptive reprogramming of gene regulation in yeast. Genetics 173: 75-85
    • (2006) Genetics , vol.173 , pp. 75-85
    • Stolovicki, E.1    Dror, T.2    Brenner, N.3    Braun, E.4
  • 38
    • 0036439421 scopus 로고    scopus 로고
    • Gene co-option in physiological and morphological evolution
    • True JR, Carroll SB (2002) Gene co-option in physiological and morphological evolution. Annu Rev Cell Dev Biol 18: 53-80
    • (2002) Annu Rev Cell Dev Biol , vol.18 , pp. 53-80
    • True, J.R.1    Carroll, S.B.2
  • 40
    • 1542357664 scopus 로고    scopus 로고
    • Global analysis of nutrient control of gene expression in Saccharomyces cerevisiae during growth and starvation
    • Wu J, Zhang N, Hayes A, Panoutsopoulou K, Oliver SG (2004) Global analysis of nutrient control of gene expression in Saccharomyces cerevisiae during growth and starvation. Proc Nat Acad Sci USA 101: 3148-3153
    • (2004) Proc Nat Acad Sci USA , vol.101 , pp. 3148-3153
    • Wu, J.1    Zhang, N.2    Hayes, A.3    Panoutsopoulou, K.4    Oliver, S.G.5
  • 41
    • 0038349351 scopus 로고    scopus 로고
    • Glucose triggers different global responses in yeast, depending on the strength of the signal, and transiently stabilizes ribosomal protein mRNAs
    • Yin Z, Wilson S, Hauser NC, Tournu H, Hoheisel JD, Brown AJP (2003) Glucose triggers different global responses in yeast, depending on the strength of the signal, and transiently stabilizes ribosomal protein mRNAs. Mol Microbiol 48: 713-724
    • (2003) Mol Microbiol , vol.48 , pp. 713-724
    • Yin, Z.1    Wilson, S.2    Hauser, N.C.3    Tournu, H.4    Hoheisel, J.D.5    Brown, A.J.P.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.