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Volumn 41, Issue 2, 2007, Pages 278-293

Protein splicing

Author keywords

Extein; Hint domain; Intein; Protein splicing

Indexed keywords

BACTERIA (MICROORGANISMS);

EID: 34247486532     PISSN: 00268933     EISSN: 16083245     Source Type: Journal    
DOI: 10.1134/S0026893307020094     Document Type: Article
Times cited : (7)

References (55)
  • 2
    • 25144483825 scopus 로고    scopus 로고
    • Protein splicing: Its discovery and structural insight into novel chemical mechanisms
    • Anraku Y., Mizutani R., Satow Y. 2005. Protein splicing: Its discovery and structural insight into novel chemical mechanisms. WBMB Life. 57, 563-574.
    • (2005) WBMB Life , vol.57 , pp. 563-574
    • Anraku, Y.1    Mizutani, R.2    Satow, Y.3
  • 4
    • 0031975772 scopus 로고    scopus 로고
    • Crystal structure of GyrA intein from Mycobacterium xenopi reveals structural basis of protein splicing
    • Klabunde T., Sharma S., Telenti A., Jacobs W., Sacchettini J. 1998. Crystal structure of GyrA intein from Mycobacterium xenopi reveals structural basis of protein splicing. Nature Struct. Biol. 5, 31-36.
    • (1998) Nature Struct. Biol , vol.5 , pp. 31-36
    • Klabunde, T.1    Sharma, S.2    Telenti, A.3    Jacobs, W.4    Sacchettini, J.5
  • 5
    • 0034602984 scopus 로고    scopus 로고
    • Dissecting the chemistry of protein splicing and its applications
    • Noren C., Wang J., Perler F. 2000. Dissecting the chemistry of protein splicing and its applications. Angew, Chem. Int. Ed. 39, 450-466.
    • (2000) Angew, Chem. Int. Ed , vol.39 , pp. 450-466
    • Noren, C.1    Wang, J.2    Perler, F.3
  • 6
    • 23444433268 scopus 로고    scopus 로고
    • Protein splicing mechanisms and applications
    • Perler F. 2005. Protein splicing mechanisms and applications. IUMBM Life. 57, 469-476.
    • (2005) IUMBM Life , vol.57 , pp. 469-476
    • Perler, F.1
  • 7
    • 1442276332 scopus 로고    scopus 로고
    • Intein harbouring large tandem repeats in replicative DNA helicase of Trichodesmium erythraeum
    • Yang J., Meng Q., Liu X. 2004. Intein harbouring large tandem repeats in replicative DNA helicase of Trichodesmium erythraeum. Mol. Microbiol. 51, 1185-1192.
    • (2004) Mol. Microbiol , vol.51 , pp. 1185-1192
    • Yang, J.1    Meng, Q.2    Liu, X.3
  • 8
    • 0028607524 scopus 로고
    • Conserved sequence features of inteins (protein introns) and their use in identifying new inteins and related proteins
    • Pietrokovski S. 1994. Conserved sequence features of inteins (protein introns) and their use in identifying new inteins and related proteins. Protein Sci. 3, 2340-2350.
    • (1994) Protein Sci , vol.3 , pp. 2340-2350
    • Pietrokovski, S.1
  • 9
    • 0036084146 scopus 로고    scopus 로고
    • InBase, the intein database
    • Perler F. 2002. InBase, the intein database. Nucleic Acids Res. 30, 383-384.
    • (2002) Nucleic Acids Res , vol.30 , pp. 383-384
    • Perler, F.1
  • 10
    • 0030763705 scopus 로고    scopus 로고
    • Compilation and analysis of intein sequences
    • Perler F., Olsen G., Adam E. 1997. Compilation and analysis of intein sequences. Nucleic Acids Res. 25, 1087-1093.
    • (1997) Nucleic Acids Res , vol.25 , pp. 1087-1093
    • Perler, F.1    Olsen, G.2    Adam, E.3
  • 11
    • 0031938897 scopus 로고    scopus 로고
    • Modular organization of inteins and C-terminal autocatalytic domains
    • Pietrokovski S. 1998. Modular organization of inteins and C-terminal autocatalytic domains. Protein Sci. 7, 64-71.
    • (1998) Protein Sci , vol.7 , pp. 64-71
    • Pietrokovski, S.1
  • 12
    • 0141755113 scopus 로고    scopus 로고
    • Crystal structure of a miniintein reveals a conserved catalytic module involved in side chain cyclization of asparagine during protein splicing
    • Ding Y., Xu M., Ghosh I., Chen X., Ferrandon S., Lesage G., Rao Z. 2003. Crystal structure of a miniintein reveals a conserved catalytic module involved in side chain cyclization of asparagine during protein splicing. J. Biol. Chem. 278, 3913-3914.
    • (2003) J. Biol. Chem , vol.278 , pp. 3913-3914
    • Ding, Y.1    Xu, M.2    Ghosh, I.3    Chen, X.4    Ferrandon, S.5    Lesage, G.6    Rao, Z.7
  • 13
    • 33646030924 scopus 로고    scopus 로고
    • Crystal structure of intein homing endonuclease II encoded in DNA polymerase gene from hyperthermophilic archaeon Thermococcus kodakaraensis strain KOD1
    • Matsumura H., Takahashi H., Inoue T., Yamamoto T., Hashimoto H., Nishioka M., Fujiwara S., Takagi M., Imanaka T., Kai Y. 2006. Crystal structure of intein homing endonuclease II encoded in DNA polymerase gene from hyperthermophilic archaeon Thermococcus kodakaraensis strain KOD1. Proteins. 63, 711-715.
    • (2006) Proteins , vol.63 , pp. 711-715
    • Matsumura, H.1    Takahashi, H.2    Inoue, T.3    Yamamoto, T.4    Hashimoto, H.5    Nishioka, M.6    Fujiwara, S.7    Takagi, M.8    Imanaka, T.9    Kai, Y.10
  • 15
    • 0035968177 scopus 로고    scopus 로고
    • Zinc inhibition of protein frani'-splicing and identification of regions essential for splicing and association of a split intein
    • Ghosh I., Sun L., Xu M. 2001. Zinc inhibition of protein frani'-splicing and identification of regions essential for splicing and association of a split intein. J. Biol. Chem. 276, 24,051-24,058.
    • (2001) J. Biol. Chem , vol.276
    • Ghosh, I.1    Sun, L.2    Xu, M.3
  • 16
    • 32044468517 scopus 로고    scopus 로고
    • Protein trans-splicing and characterization of a split family B-type DNA polymerase from the hyperthermophilic archaeal parasite Nanoarchaeum equitans
    • Choi J.J., Nam K.H., Min B., Kim S.J., Soll D., Kwon S.T. 2006. Protein trans-splicing and characterization of a split family B-type DNA polymerase from the hyperthermophilic archaeal parasite Nanoarchaeum equitans. J. Mol. Biol. 356, 1093-1106.
    • (2006) J. Mol. Biol , vol.356 , pp. 1093-1106
    • Choi, J.J.1    Nam, K.H.2    Min, B.3    Kim, S.J.4    Soll, D.5    Kwon, S.T.6
  • 17
    • 0028080347 scopus 로고
    • A proposed mechanism for the selfsplicing of proteins
    • Clarke N. 1994. A proposed mechanism for the selfsplicing of proteins. Proc. Natl. Acad. Sci. USA. 91, 11,084-11,088.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91
    • Clarke, N.1
  • 18
    • 0030012109 scopus 로고    scopus 로고
    • Protein splicing: Evidence for an N-O acyl rearrangement as the initial step in the splicing process
    • Shao Y., Xu M., Paulus H. 1996. Protein splicing: Evidence for an N-O acyl rearrangement as the initial step in the splicing process. Biochemistry. 35, 3810-3815.
    • (1996) Biochemistry , vol.35 , pp. 3810-3815
    • Shao, Y.1    Xu, M.2    Paulus, H.3
  • 19
    • 27744593757 scopus 로고    scopus 로고
    • The mechanism of inteinmediated protein splicing: Variations on a theme
    • Mills K.V., Perler F.B. 2005. The mechanism of inteinmediated protein splicing: Variations on a theme. Protein Peptide Lett. 12, 751-755.
    • (2005) Protein Peptide Lett , vol.12 , pp. 751-755
    • Mills, K.V.1    Perler, F.B.2
  • 20
    • 0027984269 scopus 로고
    • Protein splicing: An analysis of the branched intermediate and its resolution by succnimide formation
    • Xu M.Q., Coimb D.G., Paulus H., Noren J.C., Shao Y., Perler F.B. 1994. Protein splicing: An analysis of the branched intermediate and its resolution by succnimide formation. EMBO J. 13, 5517-5522.
    • (1994) EMBO J , vol.13 , pp. 5517-5522
    • Xu, M.Q.1    Coimb, D.G.2    Paulus, H.3    Noren, J.C.4    Shao, Y.5    Perler, F.B.6
  • 21
    • 27144547019 scopus 로고    scopus 로고
    • Crystal structures of an intein from the split dnaE gene of Synechocystis sp. PCC6803 reveal the catalytic model without the penultimate histidine and the mechanism of zinc ion inhibition of protein splicing
    • Sun P., Ye S., Ferrandon S., Evans T.C., Xu M.Q., Rao Z. 2005. Crystal structures of an intein from the split dnaE gene of Synechocystis sp. PCC6803 reveal the catalytic model without the penultimate histidine and the mechanism of zinc ion inhibition of protein splicing. J. Mol. Biol. 353, 1093-1105.
    • (2005) J. Mol. Biol , vol.353 , pp. 1093-1105
    • Sun, P.1    Ye, S.2    Ferrandon, S.3    Evans, T.C.4    Xu, M.Q.5    Rao, Z.6
  • 22
    • 0030959311 scopus 로고    scopus 로고
    • Identification of an unusual intein in chloroplast ClpP protease of Chlamydomonas eugametos
    • Wang S., Liu X. 1997. Identification of an unusual intein in chloroplast ClpP protease of Chlamydomonas eugametos. J. Biol. Chem. 272. 11,869-11,873.
    • (1997) J. Biol. Chem , vol.272
    • Wang, S.1    Liu, X.2
  • 23
    • 0033143682 scopus 로고    scopus 로고
    • A natural example of protein transsplicing
    • Perler F.B. 1999. A natural example of protein transsplicing. Trends Biochem. Sci. 24, 209-211.
    • (1999) Trends Biochem. Sci , vol.24 , pp. 209-211
    • Perler, F.B.1
  • 24
    • 18144374902 scopus 로고    scopus 로고
    • Intein-mediated protein trans-splicing and transgene containment in plastids
    • Khan M.S., Khalid A.M., Malik K.A. 2005. Intein-mediated protein trans-splicing and transgene containment in plastids. Trends Biotechnol. 23, 217-220.
    • (2005) Trends Biotechnol , vol.23 , pp. 217-220
    • Khan, M.S.1    Khalid, A.M.2    Malik, K.A.3
  • 25
    • 0032474760 scopus 로고    scopus 로고
    • DNA binding and cleavage by the nuclear intronencoded homing endonuclease I-PpoI
    • Flick K.E., Jurica M.S., Monnat R.J., Stoddard B.L. 1998. DNA binding and cleavage by the nuclear intronencoded homing endonuclease I-PpoI. Nature. 394, 96-101.
    • (1998) Nature , vol.394 , pp. 96-101
    • Flick, K.E.1    Jurica, M.S.2    Monnat, R.J.3    Stoddard, B.L.4
  • 26
    • 0032515167 scopus 로고    scopus 로고
    • Identification of Lys-403 in the PI-SceI homing endonuclease as part of a symmetric catalytic center
    • Gimble F.S., Duan X., Hu D., Quiocho F.A. 1998. Identification of Lys-403 in the PI-SceI homing endonuclease as part of a symmetric catalytic center. J. Biol. Chem. 273, 30,524-30,529.
    • (1998) J. Biol. Chem , vol.273
    • Gimble, F.S.1    Duan, X.2    Hu, D.3    Quiocho, F.A.4
  • 27
    • 0030729344 scopus 로고    scopus 로고
    • Statistical modeling and analysis of the LAGLIDADG family of site-specific endonucleases and indentification of an intein that encodes a site-specific endonuclease of the HNH family
    • Dalgaard J.Z., Klar A.J., Moser M., Holley W.R., Chatterjee A., Mian I.S. 1997. Statistical modeling and analysis of the LAGLIDADG family of site-specific endonucleases and indentification of an intein that encodes a site-specific endonuclease of the HNH family. Nucleic Acids Res. 25, 4626-4638.
    • (1997) Nucleic Acids Res , vol.25 , pp. 4626-4638
    • Dalgaard, J.Z.1    Klar, A.J.2    Moser, M.3    Holley, W.R.4    Chatterjee, A.5    Mian, I.S.6
  • 28
    • 1642377615 scopus 로고    scopus 로고
    • Homology modeling and nutational analysis of Ho endonuclease of yeast
    • Bakhrat A., Jurica M., Stoddard B., Raveh D. 2004. Homology modeling and nutational analysis of Ho endonuclease of yeast. Genetics. 166, 721-728.
    • (2004) Genetics , vol.166 , pp. 721-728
    • Bakhrat, A.1    Jurica, M.2    Stoddard, B.3    Raveh, D.4
  • 29
    • 0000560347 scopus 로고    scopus 로고
    • Amino acid residues in both the protein splicing and endonuclease domains of the PI-SceI intein mediate DNA binding
    • He Z., Crist M., Yen H., Duan X., Quiocho F.A., Gimble F.S. 1998. Amino acid residues in both the protein splicing and endonuclease domains of the PI-SceI intein mediate DNA binding. J. Biol. Chem. 273, 4607-4615.
    • (1998) J. Biol. Chem , vol.273 , pp. 4607-4615
    • He, Z.1    Crist, M.2    Yen, H.3    Duan, X.4    Quiocho, F.A.5    Gimble, F.S.6
  • 30
    • 0029807336 scopus 로고    scopus 로고
    • Protein footprinting approach to mapping DNA binding sites of two archaeal homing enzymes: Evidence for a two-domain protein structure
    • Lykke-Andersen J., Garrett R.A., Kjems J. 1996. Protein footprinting approach to mapping DNA binding sites of two archaeal homing enzymes: evidence for a two-domain protein structure. Nucleic Acids Res. 24, 3982-3989.
    • (1996) Nucleic Acids Res , vol.24 , pp. 3982-3989
    • Lykke-Andersen, J.1    Garrett, R.A.2    Kjems, J.3
  • 31
    • 0034723273 scopus 로고    scopus 로고
    • Probing the structure of the PI-Scel-DNA complex by affinity cleavage and affinity photocrosslinking
    • Hu D., Crist M., Duan X., Quiocho F.A., Gimble F.S. 2000. Probing the structure of the PI-Scel-DNA complex by affinity cleavage and affinity photocrosslinking. J. Biol. Chem. 275, 2705-2712.
    • (2000) J. Biol. Chem , vol.275 , pp. 2705-2712
    • Hu, D.1    Crist, M.2    Duan, X.3    Quiocho, F.A.4    Gimble, F.S.5
  • 32
    • 0035425040 scopus 로고    scopus 로고
    • Intein spread and extinction in evolution
    • Pietrokovski S. 2001. Intein spread and extinction in evolution. Trends Genet. 17, 465-472.
    • (2001) Trends Genet , vol.17 , pp. 465-472
    • Pietrokovski, S.1
  • 33
    • 0036753960 scopus 로고    scopus 로고
    • Development of a positive genetic selection system for inhibition of protein splicing using mycobacterial inteins in Escherichia coli DNA gyrase subinit A
    • Adam E., Perler F. 2002. Development of a positive genetic selection system for inhibition of protein splicing using mycobacterial inteins in Escherichia coli DNA gyrase subinit A. J. Mol. Microbiol. Biotechnol. 4, 479-487.
    • (2002) J. Mol. Microbiol. Biotechnol , vol.4 , pp. 479-487
    • Adam, E.1    Perler, F.2
  • 34
    • 0342813091 scopus 로고    scopus 로고
    • Crystal structure of a Hedgehog autoprocessing domain: Homology between Hedgehog and self-splicing proteins
    • Hall T.M., Porter J.A., Young K.E., Koonin E.V., Beachy P.A., Leahy D.J. 1997. Crystal structure of a Hedgehog autoprocessing domain: homology between Hedgehog and self-splicing proteins. Cell. 91, 85-97.
    • (1997) Cell , vol.91 , pp. 85-97
    • Hall, T.M.1    Porter, J.A.2    Young, K.E.3    Koonin, E.V.4    Beachy, P.A.5    Leahy, D.J.6
  • 37
    • 18944375945 scopus 로고    scopus 로고
    • Two new fungal inteins
    • Butler M., Goodwin T., Poulter R. 2005. Two new fungal inteins. Yeast. 22, 493-501.
    • (2005) Yeast , vol.22 , pp. 493-501
    • Butler, M.1    Goodwin, T.2    Poulter, R.3
  • 38
  • 40
    • 18144374902 scopus 로고    scopus 로고
    • Intein-mediated protein trans-splicing and transgene containment in plastids
    • Khan M.S., Khalid A.M., Malik K.A. 2005. Intein-mediated protein trans-splicing and transgene containment in plastids. Trends Biotechnol. 23, 217-220.
    • (2005) Trends Biotechnol , vol.23 , pp. 217-220
    • Khan, M.S.1    Khalid, A.M.2    Malik, K.A.3
  • 42
    • 15544374899 scopus 로고    scopus 로고
    • Algal viruses with distinct intraspecies host specificities include identical intein elements
    • Nagasaki K., Shirai Y., Tomaru Y., Nishida K., Pietrokovski S. 2005. Algal viruses with distinct intraspecies host specificities include identical intein elements. Appl. Environ. Microbiol. 71, 3599-3607.
    • (2005) Appl. Environ. Microbiol , vol.71 , pp. 3599-3607
    • Nagasaki, K.1    Shirai, Y.2    Tomaru, Y.3    Nishida, K.4    Pietrokovski, S.5
  • 43
    • 26844477403 scopus 로고    scopus 로고
    • Mimivirus gene promoters exhibit an unprecedented conservation among all eukaryotes
    • Suhre K., Audic S., Claverie J.M. 2005. Mimivirus gene promoters exhibit an unprecedented conservation among all eukaryotes. Proc. Natl. Acad. Sci. USA. 102, 14689-14693.
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 14689-14693
    • Suhre, K.1    Audic, S.2    Claverie, J.M.3
  • 44
    • 15544379710 scopus 로고    scopus 로고
    • A new example of viral intein in Mimivirus
    • Ogata H., Raoult D., Claverie J.M. 2005. A new example of viral intein in Mimivirus. Virol. J. 2, 1-7.
    • (2005) Virol. J , vol.2 , pp. 1-7
    • Ogata, H.1    Raoult, D.2    Claverie, J.M.3
  • 46
    • 0345306632 scopus 로고    scopus 로고
    • Four Inteins and three group II introns encoded in a bacterial ribonucleotide reductase gene
    • Liu X., Yang J., Meng Q. 2003. Four Inteins and three group II introns encoded in a bacterial ribonucleotide reductase gene. J. Biol. Chem. 278, 46,826-46,831.
    • (2003) J. Biol. Chem , vol.278
    • Liu, X.1    Yang, J.2    Meng, Q.3
  • 47
    • 0035572943 scopus 로고    scopus 로고
    • Inteins as enzymes
    • Paulus H. 2001. Inteins as enzymes. Bioorg. Chem. 29, 119-129.
    • (2001) Bioorg. Chem , vol.29 , pp. 119-129
    • Paulus, H.1
  • 48
    • 0033782899 scopus 로고    scopus 로고
    • Protein splicing and related forms of protein autoprocessing
    • Paulus H. 2000. Protein splicing and related forms of protein autoprocessing. Amu. Rev. Biochem. 69, 447-496.
    • (2000) Amu. Rev. Biochem , vol.69 , pp. 447-496
    • Paulus, H.1
  • 49
    • 0035577854 scopus 로고    scopus 로고
    • Hedgehog signaling in animal development: Paradigms and principles
    • Ingham P.W., McMahon A.P. 2001. Hedgehog signaling in animal development: Paradigms and principles. Genes Devel. 15, 3059-3087.
    • (2001) Genes Devel , vol.15 , pp. 3059-3087
    • Ingham, P.W.1    McMahon, A.P.2
  • 52
    • 3543025094 scopus 로고    scopus 로고
    • Protein splicing and auto-cleavage of bacterial intein-like domain lacking a C'-flanking nucleophilic residue
    • Dassa B., Haviv H., Amitai G., Pietrokovski S., 2004. Protein splicing and auto-cleavage of bacterial intein-like domain lacking a C'-flanking nucleophilic residue. J. Biol. Chem. 30, 32001-32007.
    • (2004) J. Biol. Chem , vol.30 , pp. 32001-32007
    • Dassa, B.1    Haviv, H.2    Amitai, G.3    Pietrokovski, S.4
  • 53
    • 0034732226 scopus 로고    scopus 로고
    • Complete DNA sequence of a serogroup A strain of Neisseria meningitides Z2491
    • Parkhill J., Achtman M., James K.D., Bentley S.D., Churcher C., Klee S.R. 2000. Complete DNA sequence of a serogroup A strain of Neisseria meningitides Z2491. Nature. 404, 502-506.
    • (2000) Nature , vol.404 , pp. 502-506
    • Parkhill, J.1    Achtman, M.2    James, K.D.3    Bentley, S.D.4    Churcher, C.5    Klee, S.R.6


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