Species identification of marine invertebrate early stages by whole-larvae in situ hybridisation of 18S ribosomal RNA

Marine Ecology Progress Series

Volumn 333, Issue , 2007, Pages 103-116

  Pradillon, Florence ^a,c   Schmidt, Andreas ^b   Peplies, Jörg ^a   Dubilier, Nicole ^a  

^a MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY   (Germany)

^b SENCKENBERG DEUTSCHES ENTOMOLOGISCHES INSTITUT   (Germany)

^c SORBONNE UNIVERSITÉ   (France)

Author keywords

Bivalves; Molecular ecology; Oligonucleotide probes; Polychaetes; Ribosomal RNA; Species identification; Whole larvae in situ hybridisation

Indexed keywords

BIVALVE; HYBRIDIZATION; IDENTIFICATION METHOD; INVERTEBRATE; LARVA; LIFE HISTORY; MARINE ENVIRONMENT; MOLECULAR ECOLOGY; MORPHOLOGY; POLYCHAETE; RNA;

ARMORACIA RUSTICANA; BIVALVIA; INVERTEBRATA; POLYCHAETA;

EID: 34247115110     PISSN: 01718630     EISSN: None     Source Type: Journal    
DOI: 10.3354/meps333103     Document Type: Article

References (41)

1. Amann RI, Krumholz L, Stahl DA (1990) Fluorescent-oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology. J Bacteriol 172:762-770
2. Amann R, Zarda B, Stahl DA, Schleifer KH (1992) Identification of individual prokaryotic cells by using enzyme-labeled, rRNA-targeted oligonucleotide probes. Appl Environ Microbiol 58:3007-3011
3. Anderson DM, Kulis DM, Keafer BA (1999) Detection of the toxic dinoflagellate Alexandrium fundyense (Dinophyceae) with oligonucleotide and antibody probes: variability in labeling intensity with physiological condition. J Phycol 35: 870-883
4. Behrens S, Rühland C, Inácio J, Huber H, Fonseca Á, Spencer-Martins I, Fuchs BM, Amann R (2003) In situ accessibility of small-subunit rRNA of members of the domains Bacteria, Archaea, and Eucarya to Cy3-labeled oligonucleotide probes. Appl Environ Microbiol 69:1748-1758
5. Bleidorn C, Vogt L, Bartolomaeus T (2003) New insights into polychaete phylogeny (Annelida) inferred from 18S rDNA sequences. Mol Phylogenet Evol 29:279-288
6. Coffroth MA, Mulawka III JM (1995) Identification of marine invertebrate larvae by means of PCR-RAPD species-specific markers. Limnol Oceanogr 40:181-189
7. Comtet T, Jollivet D, Khripounoff A, Segonzac M, Dixon DR (2000) Molecular and morphological identification of settlement-stage vent mussel larvae, Bathymodiolus azoricus (Bivalvia: Mytilidae), preserved in situ at active vent fields on the Mid-Atlantic Ridge. Limnol Oceanogr 45:1655-1661
8. DeLong EF, Wickhan GS, Pace NR (1989) Phylogenetic stains: ribosomal RNA-based probes for the identification of single cells. Science 243:1360-1363
9. Demers A, Lagadeuc Y, Dodson JJ, Lemieux R (1993) Immunofluorescence identification of early life history stages of scallops (Pectinidae). Mar Ecol Prog Ser 97:83-89
10. Eckman JE (1996) Closing the larval loop: linking larval ecology to the population dynamics of marine benthic invertebrates. J Exp Mar Biol Ecol 200:207-237
11. Frischer ME (2000) Development of an Argopecten-specific 18S rRNA targeted genetic probe. Mar Biotechnol 2:11-20
12. Garland ED, Zimmer CA (2002) Techniques for the identification of bivalve larvae. Mar Ecol Prog Ser 225:299-310
13. Goffredi SK, Jones WJ, Scholin CA, Marin III R, Vrijenhoek RC (2006) Molecular detection of marine invertebrate larvae. Mar Biotechnol 8:149-160
14. Hausen H (2005) Comparative structure of the epidermis in polychaetes (Annelida). Hydrobiologia 535/536:25-35
15. Hebert PDN, Ratnasingham S, deWaard JR (2003) Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species. Proc R Soc Lond B 270: 596-599
16. Hester JD, Lindquist HDA, Bobst AM, Schaefer I, Frank W (2000) Fluorescent in situ detection of Encephalitozoon hellem spores with a 6-carboxyfluorescein-labeled ribosomal RNA-targeted oligonucleotide probe. J Eukaryot Microbiol 47:299-308
17. Hu YP, Lutz RA, Vrijenhoek RC (1992) Electrophoretic identification and genetic analysis of bivalve larvae. Mar Biol 113: 227-230
18. Hurtado LA, Lutz RA, Vrijenhoek RC (2004) Distinct patterns of genetic differentiation among annelids of eastern Pacific hydrothermal vents. Mol Ecol 13:2603-2615
19. Kinlan BP, Gaines SD, Lester SE (2005) Propagule dispersal and the scales of marine community process. Diversity Distrib 11:139-148
20. Larsen JB, Frischer ME, Rasmussen LJ, Hansen BW (2005) Single-step nested multiplex PCR to differentiate between various bivalve larvae. Mar Biol 146:1119-1129
21. Levin L (1990) A review of methods for labelling and tracking marine invertebrate larvae. Ophelia 32:115-144
22. Lim EL, Caron DA, Delong EF (1996) Development and field application of a quantitative method for examining natural assemblages of protists with oligonucleotide probes. Appl Environ Microbiol 62:1416-1423
23. Ludwig W, Strunk O, Westram R, Richter L and 28 others (2004) ARB: a software environment for sequence data. Nucleic Acids Res 32:1363-1371
24. Medeiros-Bergen DE, Olson RR, Conroy JA, Kocher TD (1995) Distribution of holothurian larvae determined with species-specific genetic probes. Limnol Oceanogr 40:1225-1235
25. Miller PE, Scholin CA (2000) On detection of Pseudo-nitzschia (Bacillariophyceae) species using whole cell hybridization: sample fixation and stability. J Phycol 36:238-250
26. Morgan TS, Rogers AD (2001) Specificity and sensitivity of microsatellite markers for the identification of larvae. Mar Biol 139:967-973
27. Olson RR, Runstadler JA, Kocher TD (1991) Whose larvae? Nature 351:357-358
28. Peplies J, Glockner FO, Amann R, Ludwig W (2004) Comparative sequence analysis and oligonucleotide probe design based on 23S rRNA genes of Alphaproteobacteria from North Sea bacterioplankton. Syst Appl Microbiol 27: 573-580
29. Pernthaler J, Glöckner FO, Schönhuber W, Amann R (2001) Fluorescence in situ hybridization with rRNA-targed oligonucleotide probes. In: Paul J (ed) Methods in microbiology: marine microbiology. Academic Press London, p 207-226
30. Pernthaler A, Pernthaler J, Amann R (2002) Fluorescence in situ hybridization and catalyzed reported deposition (CARD) for the identification of marine bacteria. Appl Environ Microbiol 68:3094-3101
31. Petroni G, Rosati G, Vannini C, Modeo L, Dini F, Verni F (2002) In situ identification by fluorescently labeled oligonucleotide probes of morphologically similar, closely related ciliate species. Microb Ecol 45:156-162
32. Pradillon F (2002) Données sur les processus de reproduction et de développement précoce d'un eucaryote thermophile Alvinella pompejana. PhD thesis, University Paris VI
33. Schizas NV, Street GT, Coull BC, Chandler GT, Quattro JM (1997) An efficient DNA extraction method for small metazoans. Mol Mar Biol Biotechnol 6:381-383
34. Scholin C, Miller P, Buck K, Chavez F, Harris P, Haydock P, Howard J, Cangelosi G (1997) Detection and quantification of Pseudo-nitzschia australis in cultured and natural populations using LSU rRNA-targeted probes. Limnol Oceanogr 42:1265-1272
35. Sewell MA, Cameron MJ, McArdle BH (2004) Developmental plasticity in larval development in the echinometrid sea urchin Evechinus chloroticus with varying food ration. J Exp Mar Biol Ecol 309:219-237
36. Shirley SM, Shirley TC, Rice SD (1987) Latitudinal variations in the Dungeness crab, Cancer magister, zoeal morphology explained by incubation temperature. Mar Biol 95:371-376
37. Simon N, Campbell L, Örnolfsdottir E, Groben R, Guillou L, Lange M, Medlin LK (2000) Oligonucleotide probes for the identification of three algal groups by dot blot and fluorescent whole-cell hybridization. J Eukaryot Microbiol 47: 76-84
38. Sogin ML (1990) Amplification of ribosomal RNA genes for molecular evolution studies. In: Innis MA, Gelfland D, Sninsky J, White T (eds) PCR protocols: a guide to methods and applications. Elsevier Scientific, Amsterdam, p 307-314
39. Wallner G, Amann R, Beisker W (1993) Optimizing fluorescent in situ hybridization with rRNA-targeted oligonucleotide probes for flow cytometric identification of micoorganisms. Cytometry 14:136-143
40. Winnepenninckx B, Backeljau T, De Wachter R (1995) Phylogeny of protostome worms derived from 18S rRNA sequences. Mol Biol Evol 12:641-649
41. Zhou J, Bruns MA, Tiedje M (1996) DNA recovery from soils of diverse composition. Appl Environ Microbiol 62: 316-322