Cloning and in silico mapping of resistance gene analogues isolated from rice lines containing known genes for blast resistance

Journal of Phytopathology

Volumn 155, Issue 5, 2007, Pages 273-280

  Kumar, S P ^a   Dalal, V ^a   Singh, N K ^a   Sharma, T R ^a  

^a NATIONAL RESEARCH CENTRE ON PLANT BIOTECHNOLOGY   (India)

Author keywords

In silico mapping; Magnaporthe grisea; Resistance gene analogues; Rice

Indexed keywords

CLONE; DISEASE RESISTANCE; FUNGAL DISEASE; GENE; HOMOLOGY; PATHOGEN; PHYLOGENETICS;

BACTERIA (MICROORGANISMS); MAGNAPORTHE GRISEA;

EID: 34247112375     PISSN: 09311785     EISSN: 14390434     Source Type: Journal    
DOI: 10.1111/j.1439-0434.2007.01227.x     Document Type: Article

References (48)

1. Ahn SN, Kim YK, Han SS, Choi HC, Moon HP, McCouch SR. (1996) Molecular mapping of a gene for resistance to a Korean isolate of rice blast. Rice Genet Newsl 13:74-76.
2. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. (1990) Basic local alignment search tool. J Mol Biol 215:403-410.
3. Anderson PA, Lawrence GJ, Morish BC, Ayliffe MA, Finnegan EJ, Ellis JG. (1997) Inactivation of the flax rust resistance gene M associated with loss of a repeated unit within the leucine-rich repeat coding region. Plant Cell 9:641-651.
4. Baker B, Zambryski P, Staskawicz B, Dinesh-Kumar SP. (1997) Signaling in plant-microbe interactions. Science 276:726-733.
5. Botella MA, Parkers JE, Frost LN, Bitner-Eddy PD, Beynon JL, Daniels MJ, Holub EB, Jones JDG. (1998) Three genes of Arabidopsis Rpp 1 complex resistance locus recognize distinct Peronospora parasitica avirulence determines. Plant Cell 10:1847-1860.
6. Bryan GT, Wu K-S, Farrall L, Jia Y, Hershey HP, McAdams SA, Faulk KN, Donaldson GK, Tarchini R, Valent B. (2000) A single amino acid difference distinguishes resistant and susceptible alleles of the rice blast resistance gene Pi ta. Plant Cell 12:2033-2045.
7. Chen DH, de la Vina M, Inukai T, Mackill DJ, Ronald PC, Nelson RJ. (1999) Molecular mapping of the blast resistance gene. Pi44(t), in a line derived from a durably resistant rice cultivar. Theor Appl Genet 98:1046-1053.
8. Collins NC, Webb CA, Seah S, Ellis JG, Hulbert SH, Prypr A. (1999) The isolation and mapping of disease resistance analogs in maize. Mol Plant Microbe Interact 11:968-978.
9. Dangl JL, Jones JDG. (2001) Plant pathogens and integrated defence responses to infection. Nature 411:826-833.
10. Dixon MS, Jones DA, Keddle JS, Thomas CM, Harrison K, Jones JDG. (1996) The tomato cf-2 disease resistance locus comprises two functional genes encoding leucine-rich repeat proteins. Cell 84:451-459.
11. Donald TM, Pellerone F, Adam-Blondon AF, Bouquet A, Thomas MR, Dry IB. (2002) Identification of resistance gene analogues linked to a powdery mildew resistance locus in grapevine. Theor Appl Genet 104:610-618.
12. Gu K, Yang B, Tian D et al. (2005) R gene expression induced by a type-III effector triggers disease resistance in rice. Nature 435:7122-7125.
13. Hammond-Kosack KE, Jones JDG. (1997) Plant disease resistance genes. Annu Rev Plant Physiol Plant Mol Biol 48:575-607.
14. He L, Du C, Covaleda L, Xu Z, Robinson AF, Yu JZ, Kohel RJ, Zhang HB. (2004) Cloning, characterization, and evolution of the NBS-LRR-encoding resistance gene analogue family in polyploid cotton (Gossypium hirsutum L.). Mol Plant Microbe Interact 11:1234-1241.
15. Huh J, Kang B, Nahm S, Kims S, Ha K, Lee MH, Kim BD. (2001) A candidate gene approach identified phytokene synthase as the locus for mature fruit colour in red pepper. Theor Appl Genet 102:524-530.
16. International Rice Genome Sequencing Project (2005) The mapbased sequence of the rice genome. Nature 436:793-800.
17. Irigoyen ML, Loarce Y, Fominaya A, Ferrer E. (2004) Isolation and mapping of resistance gene analogs from the Avena strigosa genome. Theor Appl Genet 109:713-724.
18. Johal GS, Briggs SP. (1992) Reeducates activity encoded by HM1 disease resistance gene in maize. Science 258:985-987.
19. Jones JDG. (2001) Putting knowledge of plant disease resistance genes to work. Curr Opin Plant Biol 4:281-287.
20. Kanazin V, Marek LF, Shoemaker RC. (1996) Resistance gene analogs are conserved and clustered in soybean. Proc Natl Acad Sci USA 93:11746-11750.
21. Leister D, Kurth J, Laurie DA, Yano M, Sasaki T, Devos K, Graner A, Schulze-lefert P. (1998) Rapid reorganization of resistance gene homologues in cereal genomes. Proc Natl Acad Sci USA 95:370-375.
22. Lin XH, Zhang DP, Xie YF. (1996) Identifying and mapping a new gene for bacterial blight resistance in rice based on RFLP marker. Phytopathology 86:1156-1159.
23. Mago R, Nair S, Mohan M. (1999) Resistance gene analogues from rice: cloning, sequencing and mapping. Theor Appl Genet 99:50-57.
24. McCouch SR, Nelson RJ, Thome J, Zeigler RS. Mapping of blast resistance genes in rice. In: Zeigler RS, Leong SA, Teng PS (eds), Rice Blast Disease, Wallingford, Oxon, UK, CABI, 1994, pp. 167-187.
25. Mew TV, Parco AS, Hittalmani S, Inukai T, Nelson R, Zeigler RS, Huang N. (1994) Fine-mapping of major genes for blast resistance in rice. RGN 11:126-128.
26. Meyers BC, Dickerman AW, Michelmore RW, Sivaramakrishna S, Sobral BW, Young ND. (1999) Plant disease resistance genes encode members of an ancient and diverse protein family within the nucleotide-binding superfamily. Plant J 20:317-332.
27. Monosi B, Wisser RJ, Pennil L, Hulbert SH. (2004) Full-genome analysis of resistance gene homologues in rice. Theor Appl Genet 109:1434-1447.
28. Murray MG, Thompson WF. (1980) Rapid isolation of high molecular weight plant-DNA. Nucleic Acids Res 8:4321-4325.
29. Ori N, Eshed Y, Paran I, Presting G, Aviv D, Tanksley S, Zamir D, Fluhr R. (1997) The 12C family from the wilt disease resistance locus I2 belongs to nucleotide binding, leucin-rich repeat superfamily of plant resistance genes. Plant Cell 9:521-532.
30. Ramalingam J, Vera Cruz CM, Kukreja K et al. (2003) Candidate defense genes from rice, barley and maize and their association with qualitative resistance in rice. Mol Plant Microbe Interact 16:14-24.
31. Rathour R, Singh BM, Sharma TR, Chauhan RS. (2004) Population structure of Magnaporthe grisea from north-western Himalayas and its implications for blast resistance breeding of rice. J Phytopathol 152:304-312.
32. Rohlf FJ. NTSYS-pc: Numerical Taxonomy and Multivariate Analysis System. Version (1.08). NY, USA, Exeter Software Setauket, 1993.
33. 2 and Pi-ta and a consideration of their origin. Mol Plant Microbe Interact 10:517-524.
34. Sambrook J, Fritch EF, Maniatis T. Molecular Cloning: A Laboratory Manual. NY, USA, Cold Spring Harbor Laboratory, Cold Spring, 1989.
35. Sanger F, Nicklen S, Coulson AR. (1997) DNA sequencing with chain-termination inhibitors. Proc Natl Acad Sci USA 74:5463-5467.
36. Sharma TR, Chauhan RS, Singh BM, Paul R, Sagar V, Rathour R. (2002) RAPD and pathotype analyses of Magnaporthe grisea population from north-western Himalayan Region of India. J Phytopathol 150:649-656.
37. h in the rice variety Tetep. J Plant Biochem Biotechnol 14:127-133.
38. Sharma TR, Madhav MS, Singh BK et al. (2005b) High-resolution mapping, cloning and molecular characterization of the gene of rice, which confers resistance to rice blast. Mol Genet Genomics 274:569-578.
39. Shen KA, Meyers BC, Nurul Islam-Faridi MN, Chin DB, Stelly DM, Michelmore RW. (1998) Resistance gene candidates identified by PCR with degenerate oligonucleotide primers map to clusters of resistance genes in lettuce. Mol Plant Microbe Interact 11:815-823.
40. Song WY, Wang GL, Chen LL et al. (1995) A receptor kinase-like protein encoded by the rice disease resistance gene, Xa21. Science 270:1804-1806.
41. Soriano JM, Vilanova S, Romero C, Llacer G, Badenes ML. (2005) Characterization and mapping of NBS-LRR resistance gene analogs in apricot (Prunus armeniaca L.). Theor Appl Genet 48:108-114.
42. The Rice Chromosome 11 and 12 Sequencing Consortium (2005) The sequence of rice chromosome 11 and 12, rich in disease resistance genes and recent gene duplications. BMC Biol 3:20.
43. Thorup TA, Tanyolac B, Livingstone KD, Poposky S, Paran I, Jahn M. (2000) Candidate gene analysis of organ pigmentation loci in the Solanaceae. Proc Natl Acad Sci USA 97:11192-11197.
44. Wang S, Xiao X. (2002) Isolation and linkage mapping of disease-resistance-like sequences from various rice cultivars, containing different recognition specificities. Plant Breed 121:203-209.
45. Wang ZX, Yano M, Yamanouchi U, Iwamoto M, Monna L, Hayasaka H, Katayose Y, Sasaki T. (1999) The Pib gene for rice blast resistance belong to the nucleotide binding and leucine-rich repeat class of plant disease resistance genes. Plant J 19:55-64.
46. Yoshimura S, Yamanouchi U, Katayose Y, Toki S, Wang ZX, Keno I, Kurata N, Yano M, Iwata N, Sasaki T. (1998) Expression of Xa1, a bacterial blight-resistance gene in rice, is induced by bacterial inoculation. Proc Natl Acad Sci USA 95:1663-1668.
47. Yu YG, Buss GR, Saghai-Maroof MA. (1996) Isolation of a superfamily of candidate disease-resistance genes in soybean based on a conserved nucleotide-binding site. Proc Natl Acad Sci USA 93:11751-11756.
48. Zhou T, Wang Y, Chen JQ, Araki H, Jing Z, Jiang K, Shen J, Tian D. (2004) Genome-wide identification of NBS genes in Japonica rice reveals significant expansion of divergent non-TIR NBS_LRR genes. Mol Gen Genomics 271:402-415.