DNA replication and models for the origin of piRNAs

BioEssays

Volumn 29, Issue 4, 2007, Pages 382-385

  Bateman, Jack R ^a   Wu, Chao Ting ^a  

^a HARVARD MEDICAL SCHOOL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

OKAZAKI FRAGMENT; PIRNA; RNA; UNCLASSIFIED DRUG;

CONTROLLED STUDY; DNA REPLICATION; ENZYME ACTIVITY; GENE AMPLIFICATION; GENOME ANALYSIS; NONHUMAN; PACHYTENE; REVIEW; RNA STRUCTURE;

ANIMALS; DNA REPLICATION; HUMANS; MODELS, GENETIC; RNA;

EID: 34247102207     PISSN: 02659247     EISSN: None     Source Type: Journal    
DOI: 10.1002/bies.20557     Document Type: Review

References (24)

1. Aravin A, Gaidatzis D, Pfeffer S, Lagos-Quintana M, Landgraf P, et al. 2006. A novel class of small RNAs bind to MILI protein in mouse testes. Nature 442:203-207.
2. Girard A, Sachidanandam R, Hannon GJ, Carmell MA. 2006. A germline-specific class of small RNAs binds mammalian Piwi proteins. Nature 442:199-202.
3. Grivna ST, Beyret E, Wang Z, Lin H. 2006. A novel class of small RNAs in mouse spermatogenic cells. Genes Dev 20:1709-1714.
4. Lau NC, Seto AG, Kim J, Kuramochi-Miyagawa S, Nakano T, et al. 2006.Characterization of the piRNA complex from rat testes. Science 313:363-367.
5. Vagin VV, Sigova A, Li C, Seitz H, Gvozkev V, et al. 2006. A distinct small RNA pathway silences selfish genetic elements in the germline. Science 313:320-324.
6. Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, et al. 2006. Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes. Genes Dev 20:1732-1743.
7. Matzke MA, Birchler JA. 2005. RNAi-mediated pathways in the nucleus. Nat Rev Gen 6:24-35.
8. Burgers PMJ, Seo Y-S. 2006. Eukaryotic DNA Replication Forks. In DNA Replication and Human Disease. Ed. by ML DePamphilis. Cold Spring Harbor Laboratory Press. p 105-120.
9. Fanning E, Klimovichm V, Nager AR. 2006. A dynamic model for replication protein A (RPA) function in DNA processing pathways. Nuc Acids Res 34:4126-4137.
10. Tower J. 2004. Developmental gene amplication and origin replication. Ann Rev Genet 38:273-304.
11. Rothstein R, Michel B, Gangloff S. 2000. Replication fork pausing and recombination or "gimme a break". Genes Dev 14:1-10.
12. Lao-Sirieix S-h, Pellegrini L, Bell S. 2005. The promiscuous primase. Trends Genet 21:568-572.
13. Schiebel W, Hass B, Marinkovic S, Klanner A, Sänger HL. 1993. RNA-directed RNA polymerase from tomato leaves. J Biol Chem 268:11858-11867.
14. Cui S, Arosio D, Doherty KM, Brosh RM Jr, Falaschi A, et al. 2004. Analysis of the unwinding activity of the dimeric RECQ1 helicase in the presence of human replication protein A Nuc Acids Res 32:2158-2170.
15. Court DL, Sawitzke JA, Thomason LC. 2002. Genetic engineering using homologous recombination. Ann Rev Genet 36:361-388.
16. Igoucheva O, Alexeev V, Yoon K. 2004. Oligonucleotide-directed mutagenesis and targeted gene correction: a mechanistic point of view. Curr Mol Med 4:445-463.
17. Parekh-Olmedo H, Ferrara L, Brachman E, Kmiec EB. 2005. Gene therapy progress and prospects: targeted gene repair. Gene Ther 12:639-646.
18. Lolle SJ, Victor JL, Young JM, Pruitt RE. 2005. Genome-wide non-mendelian inheritance of extra-genomic information in Arabidopsis. Nature 434:505-509.
19. Chaudhury A. 2005. Plant genetics: hothead healer and extragenomic information. Nature 437:E1; discussion E2.
20. Comai L, Cartwright RA. 2005. A toxic mutator and selection alternative to the non-Mendelian RNA cache hypothesis for hothead reversion. Plant Cell 17:2856-2858.
21. Henikoff S. 2005. Rapid changes in plant genomes. Plant Cell 17:2852-2855.
22. Ray A. 2005. Plant genetics: RNA cache or genome trash? Nature 437:E1-2; discussion E2.
23. Krishnaswamy L, Peterson T. 2006. An Alternate Hypothesis to Explain the High Frequency of "Revertants" in Hothead Mutants in Arabidopsis. Plant Biol 9:30-31.
24. Peng P, Chan SW, Shah GA, Jacobsen SE. 2006. Plant genetics: increased outcrossing in hothead mutants. Nature 443:E8; discussion E8-9.