Phenotypic effect of substitution of allelic variants for a histone H1 subtype specific for growing tissues in the garden pea (Pisum sativum L.)

Genetica

Volumn 130, Issue 1, 2007, Pages 61-72

  Bogdanova, Vera S ^a   Kosterin, Oleg E ^a   Berdnikov, Vladimir A ^a  

^a INSTITUTE OF CYTOLOGY AND GENETICS   (Russian Federation)

Author keywords

Garden pea; Histone H1 heterogeneity; Nearly isogenic lines; Phenotypic effect of allele substitution; Pisum sativum L.; Quantitative traits

Indexed keywords

HISTONE; ISOPROTEIN;

ALLELE; AMINO ACID SEQUENCE; ARTICLE; GENETICS; GROWTH, DEVELOPMENT AND AGING; MOLECULAR GENETICS; PEA; PHENOTYPE; SEQUENCE HOMOLOGY; TRANSGENIC PLANT;

ALLELES; AMINO ACID SEQUENCE; HISTONES; MOLECULAR SEQUENCE DATA; PEAS; PHENOTYPE; PLANTS, GENETICALLY MODIFIED; PROTEIN ISOFORMS; SEQUENCE HOMOLOGY, AMINO ACID;

PISUM SATIVUM;

EID: 34147149173     PISSN: 00166707     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10709-006-0021-6     Document Type: Article

References (61)

1. Alami R, Fan Y, Pack S, Sonbuchner TM, Besse A, Lin Q, Greally JM, Skoultchi AI, Bouhassira EE (2003) Mammalian linker-histone subtypes differentially affect gene expression in vivo. Proc Natl Acad Sci USA 100:5920-5925
2. Allan J, Hartman PG, Crane-Robinson C, Aviles FX (1980) The structure of histone H1 and its location in chromatin. Nature 288:675-679
3. Allan J, Mitchell N, Harborne L, Bohm C, Crane-Robinson C (1986) Roles of H1 domains in determining higher order chromatin structure and H1 location. J Mol Biol 187:591-601
4. The Arabidopsis Genome Initiative (2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408:796-815
5. Barra JL, Rhounim L, Rossignol J-L, Faugeron G (2000) Histone H1 is dispensable for methylation-associated gene silencing in Ascobolus immersus and essential for long life span. Mol Cell Biol 20:61-69
6. Bennetzen JL, Coleman C, Liu R, Ma J, Ramakrishna W (2004) Consistent over-estimation of gene number in complex plant genomes. Curr Opin Plant Biol 7:732-736
7. Berdnikov VA, Gorel FL (1975) A study of ratios between histone fractions. Molekulyarnaya Biologiya (USSR) 9:699-705
8. Berdnikov VA, Rozov SM, Temnykh SV, Gorel FL, Kosterin OE (1993a) Adaptive nature of interspecies variation of histone H1 in insects. J Mol Evol 36:497-507
9. Berdnikov VA, Bogdanova VS, Rozov SM, Kosterin OE (1993b) The geographic patterns of histone H1 allelic frequencies formed in the course of pea (Pisum sativum L.) cultivation. Heredity 71:199-209
10. Berdnikov VA, Gorel FL, Bogdanova VS, Kosterin OE, Trusov YA, Rozov SM (1999) Effect of a substitution of a short chromosome segment carrying a histone H1 locus on expression of the homeiotic gene Tl in heterozygote in the garden pea Pisum sativum L. Genet Res 73:93-109
11. Berdnikov VA, Bogdanova VS, Gorel FL, Kosterin OE, Trusov YA (2003) Large changes in the structure of the major histone H1 subtype result in small effects on quantitative traits in legumes. Genetica 119:168-182
12. Bogdanova VS, Rozov SM, Trusov YA, Berdnikov VA (1994). Phenotypic effect of substitutions of short chromosomal segments containing different alleles of histone H1 genes in garden pea (Pisum sativum L.). Genet Res 64:35-41
13. Bogdanova VS, Lester DR, Berdnikov VA, Andersson I (2005) Structure of allelic variants of subtype 5 of histone H1 in pea Pisum sativum L. Heredity 94:582-588
14. Brown DT (2001) Histone variants: are they functionally heterogeneous? Genome Biol 2:reviews0006.1-reviews0006.6
15. Bustin M, Catez F, Lim J-H (2005) The dynamics of histone H1 function in chromatin. Mol Cell 17:617-620
16. Dopico B, Labrador E (1999) cDNA sequence encoding a lysinerich H1 histone of Cicer arietinum (Accession No AJ006767) (PGR99-020). Plant Physiol 119:806
17. Drabent B, Saftig P, Bode C, Doenecke D (2000) Spermatogenesis proceeds normally in mice without linker histone H1t. Histochem Cell Biol 113:433-442
18. Ellis THN, Poyser SJ (2002) Integration and comparison of pea genetic and cytogenetic maps. New Phytol 153:17-25
19. Fan Y, Sirotkin A, Russell RG, Ayala J, Skoultchi AI (2001) Individual somatic H1 subtypes are dispensable for mouse development even in mice lacking the H1(0) replacement subtype. Mol Cell Biol 21:7933-7943
20. Fan Y, Nikitina T, Morin-Kensicki EM, Zhao J, Magnuson TR, Woodcock CL, Skoultchi AI (2003) H1 linker histones are essential for mouse development and affect nucleosome spacing in vivo. Mol Cell Biol 23:4559-4572
21. Fan Y, Nikitina T, Zhao J, Fleury TJ, Bhattacharyya R, Bouhassira EE, Stein A, Woodcock CL, Skoultchi AI (2005) Histone H1 depletion in mammals alters global chromatin structure but causes specific changes in gene regulation. Cell 123:1199-1212
22. Felsenfeld G (1992) Chromatin as an essential part of the transcriptional mechanism. Nature 355:219-224
23. Folco HD, Freitag M, Ramon A, Temporini ED, Alvarez ME, Garcia I, Scazzocchio C, Selker EU, Rosa AL (2003) Histone H1 Is required for proper regulation of pyruvate decarboxylase gene expression in Neurospora crassa. Eukaryot Cell 2:341-350
24. Gantt JS, Key JL (1987) Molecular cloning of a pea H1 histone cDNA. Eur J Biochem 166:119-125
25. Georgel PT, Hansen JC (2001) Linker histone function in chromatin: dual mechanisms of action. Biochem Cell Biol 79:313-316
26. Gornicka-Michalska E, Palyga J, Kowalski A, Cywa-Benko K (2006) Sequence variants of chicken linker histone H1.a. FEBS J 273:1240-1250
27. Hanson WD, (1959) Early generation analysis of length of heterozygous chromosome segments around a locus held heterozygous with backcrossing or selfing. Genetics 44:833-838
28. Hendzel MJ, Lever MA, Crawford E, Th'ng JP (2004) The Cterminal domain is the primary determinant of histone H1 binding to chromatin in vivo. J Biol Chem 279:20,028-20,034
29. Jedrusik MA, Schulze E (2001) A single histone H1 isoform (H1.1) is essential for chromatin silencing and germline development in Caenorhabditis elegans. Development 128:1069-1080
30. Johns EW (1964) Studies of histones 7. Preparative methods for histone fractions from calf thymus. Biochem J 92:55-59
31. Konishi A, Shimizu S, Hirota J, Takao T, Fan Y, Matsuoka Y, Zhang L, Yoneda Y, Fujii Y, Skoultchi AI, Tsujimoto Y (2003) Involvement of histone H1.2 in apoptosis induced by DNA double-strand breaks. Cell 114:673-688
32. Kosterin OE (1992) Mapping of the third locus for histone H1 genes in pea. Pisum Genet 24:56-59
33. Kosterin OE, Bogdanova VS, Gorel FL, Rozov SM, Trusov YA, Berdnikov VA (1994) Histone H1 of the garden pea (Pisum sativum L.); composition, developmental changes, allelic polymorphism and inheritance. Plant Sci 101:189-202
34. Lee H, Habas R, Abate-Shen C (2004) MSX1 cooperates with histone H1b for inhibition of transcription and myogenesis. Science 304:1675-1678
35. Lin Q, Sirotkin A, Skoultchi AI (2000) Normal spermatogenesis in mice lacking the testis-specific linker histone H1t. Mol Cell Biol 20:2122-2128
36. Panyim S, Chalkley R (1969) High resolution in acrylamide gel electrophoresis of histones. Arch Biochem Biophys 130:337-346
37. Ponte I, Vidal-Taboada JM, Suau P (1998) Evolution of the vertebrate histone H1 class: evidence for the functional differentiation of the subtypes. Mol Biol Evol 15:702-708
38. Prymakowska-Bosak M, Przewloka MR, Iwkiewicz J, Egierszdorff S, Kuras M, Chaubet N, Gigot C, Spiker S, Jerzmanowski A (1996) Histone H1 overexpressed to high level in tobacco affects certain developmental programs but has limited effect on basal cellular functions. Proc Natl Acad Sci USA 93:10,250-10,255
39. Prymakowska-Bosak M, Przewloka MR, Slusarczyk J, Kuras M, Lichota J, Kilianczyk B, Jerzmanowski A (1999) Linker histones play a role in male meiosis and the development of pollen grains in tobacco. Plant Cell 11:2317-2329
40. Przewloka MR, Wierzbicki AT, Slusarczyk J, Kuras M, Grasser KD, Stemmer C, Jerzmanowski A (2002) The "drought-inducible" histone H1s of tobacco play no role in male sterility linked to alterations in H1 variants. Planta 215:371-379
41. Ramon A, Muro-Pastor MI, Scazzocchio C, Gonzalez R (2000) Deletion of the unique gene encoding a typical histone H1 has no apparent phenotype in Aspergillus nidulans. Mol Microbiol 35:223-233
42. Rozov SM, Bogdanova VS, Berdnikov VA (1986) Different chromosomal localizations of genes coding for Pisum histone H1 fractions. Genetika (USSR) 22:2159-2166
43. Sarg B, Green A, Soderkvist P, Helliger W, Rundquist I, Lindner HH (2005) Characterization of sequence variations in human histone H1.2 and H1.4 subtypes. FEBS J 272:3673-3683
44. Sato MH, Ura K, Hohmura KI, Tokumasu F, Yoshimura SH, Hanaoka F, Takeyasu K (1999) Atomic force microscopy sees nucleosome positioning and histone H1-induced compaction in reconstituted chromatin. FEBS Lett 452:267-271
45. Sera T, Wolffe AP (1998) Role of histone H1 as an architectural determinant of chromatin structure and as a specific repressor of transcription on Xenopus oocyte 5S rRNA genes. Mol Cell Biol 18:3668-3680
46. Shen X, Yu L, Weir JW, Gorovsky MA (1995) Linker histones are not essential and affect chromatin condensation in vivo. Cell 82:47-56
47. Shen X, Gorovsky MA 1996. Linker histone H1 regulates specific gene expression but not global transcription in vivo. Cell 86:475-483
48. 0 linker histone. Proc Natl Acad Sci USA 92:6434-6438
49. Stein GS, Stein JL, Marzluff WF (eds) (1984) Histone genes: structure, organization, and regulation. John Willey & Sons, NY
50. Steinbach OC, Wolffe AP, Rupp RA (1997) Somatic linker histones cause loss of mesodermal competence in Xenopus. Nature 389:395-399
51. Takami Y, Nishi R, Nakayama T (2000) Histone H1 variants play individual roles in transcription regulation in the DT40 chicken B cell line. Biochem Biophys Res Comm 268:501-508
52. Tanaka I, Akahori Y, Gomi K, Suzuki T, Ueda K (1999) A novel histone variant localized in nucleoli of higher plant cells. Chromosoma 108:190-199
53. Th'ng JP, Sung R, Ye M, Hendzel MJ (2005) H1 family histones in the nucleus: control of binding and localization by the C-terminal domain. J Biol Chem 280:27,809-27,814
54. Thoma F, Losa R, Koller T (1983) Involvement of the domains of histones H1 and H5 in the structural organization of soluble chromatin. J Mol Biol 167:619-640
55. Thomas JO (1999) Histone H1: location and role. Curr Opin Cell Biol 11:312-317
56. Trieschmann L, Schultze E, Schultze B, Grossbach U (1997) The histone H1 genes of the dipteran insect, Chironomus thummi, fall under two divergent classes and encode proteins with distinct intranuclear distribution and potentially different functions. Eur J Biochem 250:184-196
57. van Holde KE (1988) Chromatin. Springer Verlag, New York
58. Weeden NF, Ellis THN, Timmerman-Vaughan GM, Swiecicki WK, Rozov SM, Berdnikov VA (1998) A consensus linkage map for Pisum sativum. Pisum Genet 30:1-4
59. Wierzbicki AT, Jerzmanowski A (2005) Suppression of histone H1 genes in Arabidopsis results in heritable developmental defects and stochastic changes in DNA methylation. Genetics 169:997-1008
60. Wolffe AP, Khochbin S, Dimitrov S (1997) What do linker histone do in chromatin? BioEssays 19:249-255
61. Woo HH, Brigham LA, Hawes MC (1995) Molecular cloning and expression of mRNAs encoding H1 histone and an H1 histone-like sequences in root tips of pea (Pisum sativum L.). Plant Mol Biol 28:1143-1147