Sequence variants of chicken linker histone H1.a

FEBS Journal

Volumn 273, Issue 6, 2006, Pages 1240-1250

  Górnicka Michalska, Ewa ^a   Pałyga, Jan ^a   Kowalski, Andrzej ^a   Cywa Benko, Katarzyna ^b  

^a JAN KOCHANOWSKI UNIVERSITY   (Poland)

^b UNIVERSITY OF RZESZÓW   (Poland)

Author keywords

Allelic isoforms; Chicken; Genetic polymorphism; Histone H1; Peptide microsequencing

Indexed keywords

HISTONE H1;

AMINO ACID SUBSTITUTION; AMINO TERMINAL SEQUENCE; ANIMAL CELL; ANIMAL TISSUE; ARTICLE; CARBOXY TERMINAL SEQUENCE; CHICKEN; CONTROLLED STUDY; DNA CLEAVAGE; GENE FREQUENCY; GENE IDENTIFICATION; GENE SEQUENCE; GENETIC LINKAGE; GENETIC POLYMORPHISM; KIDNEY; LABORATORY TEST; LUNG; NONHUMAN; PHENOTYPE; PRIORITY JOURNAL; SEQUENCE HOMOLOGY; SPLEEN; TESTIS;

AMINO ACID SEQUENCE; ANIMALS; BIRDS; CHICKENS; CHROMATIN; CHYMOTRYPSIN; DUCKS; ERYTHROCYTES; HISTONES; MASS SPECTROMETRY; MOLECULAR SEQUENCE DATA; POLYMORPHISM, GENETIC; PROTEIN ISOFORMS; QUAIL; TANDEM REPEAT SEQUENCES; VARIATION (GENETICS);

ANIMALIA; AVES; GALLUS GALLUS;

EID: 33644755866     PISSN: 1742464X     EISSN: 17424658     Source Type: Journal    
DOI: 10.1111/j.1742-4658.2006.05147.x     Document Type: Article

References (51)

1. Cole RD 1987 Microheterogeneity in H1 histones and its consequences Int J Pept Protein Res 30 433 449
2. Sullivan S Sink DW Trout KL Makalowska I Taylor PM Baxevanis AD Landsman D 2002 The histone database Nucleic Acids Res 30 341 342
3. Khochbin S 2001 Histone H1 diversity: bridging regulatory signals to linker histone function Gene 271 1 12
4. Fan Y Nikitina T Morin-Kensicki EM Zhao J Magnuson TR Woodcock CL Skoultchi AI 2003 H1 linker histones are essential for mouse development and affect nucleosome spacing in vivo Mol Cell Biol 23 4559 4572
5. Parseghian MH Hamkalo BA 2001 A compendium of the histone H1 family of somatic subtypes: an elusive cast of characters and their characteristics Biochem Cell Biol 79 289 304
6. Brown DT Gunjan A Alexander BT Sittman DB 1997 Differential effect of H1 variant overproduction on gene expression is due to differences in the central globular domain Nucleic Acids Res 25 5003 5009
7. Downs JA Kosmidou E Morgan A Jackson SP 2003 Suppression of homologous recombination by the Saccharomyces cerevisiae linker histone Mol Cell 11 1685 1692
8. Konishi A Shimizu S Hirota J Takao T Fan Y Matsuoka Y Zhang L Yoneda Y Fujii Y Skoultchi AI et al. 2003 Involvement of histone H1.2 in apoptosis induced by DNA double-strand breaks Cell 114 673 688
9. Widlak P Kalinowska M Parseghian MH Lu X Hansen JC Garrard WT 2005 The histone H1 C-terminal domain binds to the apoptotic nuclease, DNA Fragmentation Factor (DFF40/CAD) and stimulates DNA cleavage Biochemistry 44 7871 7878
10. Wierzbicki AT Jerzmanowski A 2005 Suppression of histone H1 genes in Arabidopsis results in heritable developmental defects and stochastic changes in DNA methylation Genetics 169 997 1008
11. Fan Y Nikitina T Zhao J Fleury TJ Bhattacharyya R Bouhassira EE Stein A Woodcock CL Skoultchi AI 2005 Histone H1 depletion in mammals alters global chromatin structure but causes specific changes in gene regulation Cell 123 1199 1212
12. Saeki H Ohsumi K Aihara H Ito T Hirose S Ura K Kaneda Y 2005 Linker histone variants control chromatin dynamics during early embryogenesis Proc Natl Acad Sci USA 102 5697 5702
13. Lee H Habas R Abate-Shen C 2004 MSX1 cooperates with histone H1b for inhibition of transcription and myogenesis Science 304 1675 1678
14. Jedrusik MA Schulze E 2001 A single histone H1 isoform (H1.1) is essential for chromatin silencing and germline development in Caenorhabditis elegans Development 128 1069 1080
15. Jedrusik MA Schulze E 2003 Telomeric position effect variegation in Saccharomyces cerevisiae by Caenorhabditis elegans linker histones suggests a mechanistic connection between germ line and telomeric silencing Mol Cell Biol 23 3681 3691
16. Vila R Ponte I Collado M Arrondo JL Suau P 2001 Induction of secondary structure in a COOH-terminal peptide of histone H1 by interaction with the DNA: an infrared spectroscopy study J Biol Chem 276 30898 30903
17. Vila R Ponte I Jimenez MA Rico M Suau P 2000 A helix-turn motif in the C-terminal domain of histone H1 Protein Sci 9 627 636
18. Ponte I Vila R Suau P 2003 Sequence complexity of histone H1 subtypes Mol Biol Evol 20 371 380
19. Hendzel MJ Lever MA Crawford E Th'ng JP 2004 The C-terminal domain is the primary determinant of histone H1 binding to chromatin in vivo J Biol Chem 279 20028 20034
20. Th'ng JP Sung R Ye M Hendzel MJ 2005 H1 family histones in the nucleus: control of binding and localization by the C-terminal domain J Biol Chem 280 27809 27814
21. Gorel FL Berdnikov VA Rozov SM 1982 Molecular variants of histone H5 of linnet (Acanthis flammea) Mol Biol (Mosk) 16 790 798 (in Russian).
22. Zweidler A 1984 Core histone variants of the mouse: Primary structure and differential expression. In Histone Genes: Structure, Organization and Regulation Stein GS Stein JL Marzluff WF, eds), pp. 339 371 John Wiley New York
23. Pałyga J Górnicka-Michalska E Kowalski A Ksi̧kiewicz J 2000 Natural allelic variation of duck erythrocyte histone H1b Int J Biochem Cell Biol 32 665 675
24. Berdnikov VA Bogdanova VS Gorel FL Kosterin OE Trusov YA 2003 Large changes in the structure of the major histone H1 subtype result in small effects on quantitative traits in legumes Genetica 119 167 182
25. Bogdanova VS Lester DR Berdnikov VA Andersson I 2005 Structure of allelic variants of subtype 5 of histone H1 in pea Pisum sativum L Heredity 94 582 588
26. Sarg B Green A Soderkvist P Helliger W Rundquist I Lindner HH 2005 Characterization of sequence variations in human histone H1.2 and H1.4 subtypes FEBS J 272 3673 3683
27. Greenaway PJ Murray K 1971 Heterogeneity and polymorphism in chicken erythrocyte histone fraction V Nat New Biol 229 233 238
28. Neelin JM Neelin EM Lindsay DW Pałyga J Nichols CR Cheng KM 1995 The occurrence of a mutant dimerizable histone H5 in Japanese quail erythrocytes Genome 38 982 990
29. Bogdanova VS Rozov SM Trusov YA Berdnikov VA 1994 Phenotypic effect of substitutions of short chromosomal segments containing different alleles of histone H1 genes in garden pea (Pisum sativum L.) Genet Res 64 35 41
30. Pałyga J 1998 Distribution of allelic forms of erythrocyte H1 histones in Japanese quail populations divergently selected for amount of weight loss after transient starvation Biochem Genet 36 79 92
31. Kowalski A Pałyga J Górnicka-Michalska E Krajewska WM 1998 Allelic polymorphism of histone H1.a in duck erythrocytes Biochem Genet 36 183 191
32. Pałyga J Górnicka-Michalska E Kowalski A 1993 Genetic polymorphism of histone H1.z in duck erythrocytes Biochem J 294 859 863
33. Kowalski A Pałyga J Górnicka-Michalska E 2004 Identification of histone H1.z components in a Muscovy duck (Cairina moschata L.) population Comp Biochem Physiol B Biochem Mol Biol 137 151 157
34. Pałyga J 1998 Genes for polymorphic H1 histones are linked in the Japanese quail genome Biochem Genet 36 93 103
35. Pałyga J Neelin JM 1998 Isolation and preliminary characterization of histone H1.b allelic variants from quail erythrocytes Genome 41 709 719
36. Górnicka-Michalska E Pałyga J Luboń H Kowalski A Cywa-Benko K 1998 Genetic variants of chicken erythrocyte histone H5 Biochem Mol Biol Int 44 605 615
37. Shannon MF Wells JR 1987 Characterization of the six chicken histone H1 proteins and alignment with their respective genes J Biol Chem 262 9664 9668
38. Coles LS Robins AJ Madley LK Wells JR 1987 Characterization of the chicken histone H1 gene complement: generation of a complete set of vertebrate H1 protein sequences J Biol Chem 262 9656 9663
39. Bustin M Catez F Lim JH 2005 The dynamics of histone H1 function in chromatin Mol Cell 17 617 620
40. Kuzmichev A Jenuwein T Tempst P Reinberg D 2004 Different Ezh2-containing complexes target methylation of histone H1 or nucleosomal histone H3 Mol Cell 14 183 193
41. Sarg B Helliger W Talasz H Forg B Lindner HH 2005 Histone H1 phosphorylation occurs site-specifically during interphase and mitosis: identification of a novel phosphorylation site on histone H1 J Biol Chem doi: 10.1074/jbc.M508957200.q5
42. Berdnikov VA Bogdanova VS Rozov SM Kosterin OE 1993 Geographic patterns of histone H1 allelic frequencies formed in the course of Pisum sativum L. (pea) cultivation Heredity 71 199 209
43. o C-terminal domain J Biol Chem 279 8701 8707
44. Montes de Oca R Lee KK Wilson KL 2005 Binding of barrier-to- autointegration factor (BAF) to histone H3 and selected linker histones including H1.1 J Biol Chem 280 42252 42262
45. Suzuki M 1989 SPKK, a new nucleic acid-binding unit of protein found in histone EMBO J 8 797 804
46. Dou Y Gorovsky MA 2000 Phosphorylation of linker histone H1 regulates gene expression in vivo by creating a charge patch Mol Cell 6 225 231
47. Dou Y Bowen J Liu Y Gorovsky MA 2002 Phosphorylation and an ATP-dependent process increase the dynamic exchange of H1 in chromatin J Cell Biol 158 1161 1170
48. Jenuwein T Allis CD 2001 Translating the histone code Science 293 1074 1080
49. Sangster TA Lindquist S Queitsch C 2004 Under cover: causes, effects and implications of Hsp90-mediated genetic capacitance Bioessays 26 348 362
50. Alekseev OM Widgren EE Richardson RT O'Rand MG 2005 Association of NASP with HSP90 in mouse spermatogenic cells: stimulation of ATPase activity and transport of linker histones into nuclei J Biol Chem 280 2904 2911
51. Busch H Daskal Y 1977 Methods for isolation of nuclei and nucleoli Methods Cell Biol 15 1 43