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Volumn 13, Issue 4, 2007, Pages 597-605

Functional defects in transfer RNAs lead to the accumulation of ribosomal RNA precursors

Author keywords

Rep helicase; RNA processing; rRNA; Translation; tRNA

Indexed keywords

RIBONUCLEASE P; RIBOSOME RNA; RNA 16S; TRANSFER RNA;

EID: 33947713202     PISSN: 13558382     EISSN: 14699001     Source Type: Journal    
DOI: 10.1261/rna.319407     Document Type: Article
Times cited : (9)

References (39)
  • 1
    • 30944462801 scopus 로고    scopus 로고
    • Cycles of chromosome instability are associated with a fragile site and are increased by defects in DNA replication and checkpoint controls in yeast
    • Admire, A., Shanks, L., Danzl, N., Wang, M., Weier, U., Stevens, W., Hunt, E., and Weinert, T. 2006. Cycles of chromosome instability are associated with a fragile site and are increased by defects in DNA replication and checkpoint controls in yeast. Genes & Dev. 20: 159-173.
    • (2006) Genes & Dev , vol.20 , pp. 159-173
    • Admire, A.1    Shanks, L.2    Danzl, N.3    Wang, M.4    Weier, U.5    Stevens, W.6    Hunt, E.7    Weinert, T.8
  • 3
    • 0028331525 scopus 로고
    • Phenotypic suppression of DNA gyrase deficiencies by a deletion lowering the gene dosage of a major tRNA in Salmonella typhimurium
    • Blanc-Potard, A.B. and Bossi, L. 1994. Phenotypic suppression of DNA gyrase deficiencies by a deletion lowering the gene dosage of a major tRNA in Salmonella typhimurium. J. Bacteriol. 176: 2216-2226.
    • (1994) J. Bacteriol , vol.176 , pp. 2216-2226
    • Blanc-Potard, A.B.1    Bossi, L.2
  • 4
    • 0038120874 scopus 로고    scopus 로고
    • The DEAD-box RNA helicase SrmB is involved in the assembly of 50S ribosomal subunits in Escherichia coli
    • Charollais, J., Pflieger, D., Vinh, J., Dreyfus, M., and Iost, I. 2003. The DEAD-box RNA helicase SrmB is involved in the assembly of 50S ribosomal subunits in Escherichia coli. Mol. Microbiol. 48: 1253-1265.
    • (2003) Mol. Microbiol , vol.48 , pp. 1253-1265
    • Charollais, J.1    Pflieger, D.2    Vinh, J.3    Dreyfus, M.4    Iost, I.5
  • 5
    • 2542557396 scopus 로고    scopus 로고
    • CsdA, a cold-shock RNA helicase from Escherichia coli, is involved in the biogenesis of 50S ribosomal subunit
    • Charollais, J., Dreyfus, M., and Iost, I. 2004. CsdA, a cold-shock RNA helicase from Escherichia coli, is involved in the biogenesis of 50S ribosomal subunit. Nucleic Acids Res. 32: 2751-2759.
    • (2004) Nucleic Acids Res , vol.32 , pp. 2751-2759
    • Charollais, J.1    Dreyfus, M.2    Iost, I.3
  • 6
    • 0027960812 scopus 로고
    • Role of the AGA/AGG codons, the rarest codons in global gene expression in Escherichia coli
    • Chen, G.T. and Inouye, M. 1994. Role of the AGA/AGG codons, the rarest codons in global gene expression in Escherichia coli. Genes & Dev. 8: 2641-2652.
    • (1994) Genes & Dev , vol.8 , pp. 2641-2652
    • Chen, G.T.1    Inouye, M.2
  • 7
    • 0029740114 scopus 로고    scopus 로고
    • DNA replication fork pause sites dependent on transcription
    • Deshpande, A.M. and Newlon, C.S. 1996. DNA replication fork pause sites dependent on transcription. Science 272: 1030-1033.
    • (1996) Science , vol.272 , pp. 1030-1033
    • Deshpande, A.M.1    Newlon, C.S.2
  • 8
    • 32644435694 scopus 로고    scopus 로고
    • Degradation of RNA in bacteria: Comparison of mRNA and stable RNA
    • Deutscher, M.P. 2006. Degradation of RNA in bacteria: Comparison of mRNA and stable RNA. Nucleic Acids Res. 34: 659-666.
    • (2006) Nucleic Acids Res , vol.34 , pp. 659-666
    • Deutscher, M.P.1
  • 9
    • 0034657405 scopus 로고    scopus 로고
    • An evolutionarily conserved RNA stem-loop functions as a sensor that directs feedback regulation of RNase E gene expression
    • Diwa, A., Bricker, A.L., Jain, C., and Belasco, J.G. 2000. An evolutionarily conserved RNA stem-loop functions as a sensor that directs feedback regulation of RNase E gene expression. Genes & Dev. 14: 1249-1260.
    • (2000) Genes & Dev , vol.14 , pp. 1249-1260
    • Diwa, A.1    Bricker, A.L.2    Jain, C.3    Belasco, J.G.4
  • 10
    • 0030564828 scopus 로고    scopus 로고
    • Co-variation of tRNA abundance and codon usage in Escherichia coli at different growth rates
    • Dong, H., Nilsson, L., and Kurland, C.G. 1996. Co-variation of tRNA abundance and codon usage in Escherichia coli at different growth rates. J. Mol. Biol. 260: 649-663.
    • (1996) J. Mol. Biol , vol.260 , pp. 649-663
    • Dong, H.1    Nilsson, L.2    Kurland, C.G.3
  • 11
    • 0018857218 scopus 로고
    • The structure and aminoacylation of a temperature-sensitive tRNATrp (Escherichia coli)
    • Eisenberg, S.P. and Yarus, M. 1980. The structure and aminoacylation of a temperature-sensitive tRNATrp (Escherichia coli). J. Biol. Chem. 255: 1128-1137.
    • (1980) J. Biol. Chem , vol.255 , pp. 1128-1137
    • Eisenberg, S.P.1    Yarus, M.2
  • 12
    • 0022504959 scopus 로고
    • The E. coli dnaY gene encodes an arginine transfer RNA
    • Garcia, G.M., Mar, P.K., Mullin, D.A., Walker, J.R., and Prather, N.E. 1986. The E. coli dnaY gene encodes an arginine transfer RNA. Cell 45: 453-459.
    • (1986) Cell , vol.45 , pp. 453-459
    • Garcia, G.M.1    Mar, P.K.2    Mullin, D.A.3    Walker, J.R.4    Prather, N.E.5
  • 13
    • 22244456758 scopus 로고    scopus 로고
    • The pseudouridine synthase RluD is required for normal ribosome assembly and function in Escherichia coli
    • Gutgsell, N.S., Deutscher, M.P., and Ofengand, J. 2005. The pseudouridine synthase RluD is required for normal ribosome assembly and function in Escherichia coli. RNA 11: 1141-1152.
    • (2005) RNA , vol.11 , pp. 1141-1152
    • Gutgsell, N.S.1    Deutscher, M.P.2    Ofengand, J.3
  • 14
    • 26644472197 scopus 로고    scopus 로고
    • Unwinding of the nascent lagging strand by Rep and PriA enables the direct restart of stalled replication forks
    • Heller, R.C. and Marians, K.J. 2005. Unwinding of the nascent lagging strand by Rep and PriA enables the direct restart of stalled replication forks. J. Biol. Chem. 280: 34143-34151.
    • (2005) J. Biol. Chem , vol.280 , pp. 34143-34151
    • Heller, R.C.1    Marians, K.J.2
  • 15
    • 0018603542 scopus 로고
    • Isolation and characterization of dnaX and dnaY temperature-sensitive mutants of Escherichia coli
    • Henson, J.M., Chu, H., Irwin, C.A., and Walker, J.R. 1979. Isolation and characterization of dnaX and dnaY temperature-sensitive mutants of Escherichia coli. Genetics 92: 1041-1059.
    • (1979) Genetics , vol.92 , pp. 1041-1059
    • Henson, J.M.1    Chu, H.2    Irwin, C.A.3    Walker, J.R.4
  • 16
    • 0022589865 scopus 로고
    • Codon usage and gene expression
    • Holm, L. 1986. Codon usage and gene expression. Nucleic Acids Res. 14: 3075-3087.
    • (1986) Nucleic Acids Res , vol.14 , pp. 3075-3087
    • Holm, L.1
  • 17
    • 0348047594 scopus 로고    scopus 로고
    • The Saccharomyces cerevisiae helicase Rrm3p facilitates replication past nonhistone protein-DNA complexes
    • Ivessa, A.S., Lenzmeier, B.A., Bessler, J.B., Goudsouzian, L.K., Schnakenberg, S.L., and Zakian, V.A. 2003. The Saccharomyces cerevisiae helicase Rrm3p facilitates replication past nonhistone protein-DNA complexes. Mol. Cell 12: 1525-1536.
    • (2003) Mol. Cell , vol.12 , pp. 1525-1536
    • Ivessa, A.S.1    Lenzmeier, B.A.2    Bessler, J.B.3    Goudsouzian, L.K.4    Schnakenberg, S.L.5    Zakian, V.A.6
  • 18
    • 0036231777 scopus 로고    scopus 로고
    • Consequences of RNase E scarcity in Escherichia coli
    • Jain, C., Deana, A., and Belasco, J.G. 2002. Consequences of RNase E scarcity in Escherichia coli. Mol. Microbiol. 43: 1053-1064.
    • (2002) Mol. Microbiol , vol.43 , pp. 1053-1064
    • Jain, C.1    Deana, A.2    Belasco, J.G.3
  • 19
    • 0028804911 scopus 로고
    • Effects of rare codon clusters on high-level expression of heterologous proteins in Escherichia coli
    • Kane, J.F. 1995. Effects of rare codon clusters on high-level expression of heterologous proteins in Escherichia coli. Curr. Opin. Biotechnol. 6: 494-500.
    • (1995) Curr. Opin. Biotechnol , vol.6 , pp. 494-500
    • Kane, J.F.1
  • 20
    • 0021347298 scopus 로고
    • RNase III cleavage is obligate for maturation but not for function of Escherichia coli pre-23S rRNA
    • King, T.C., Sirdeshmukh, R., and Schlessinger, D. 1984. RNase III cleavage is obligate for maturation but not for function of Escherichia coli pre-23S rRNA. Proc. Natl. Acad. Sci. 81: 185-188.
    • (1984) Proc. Natl. Acad. Sci , vol.81 , pp. 185-188
    • King, T.C.1    Sirdeshmukh, R.2    Schlessinger, D.3
  • 21
    • 0022981322 scopus 로고
    • Nucleolytic processing of ribonucleic acid transcripts in procaryotes
    • King, T.C., Sirdeskmukh, R., and Schlessinger, D. 1986. Nucleolytic processing of ribonucleic acid transcripts in procaryotes. Microbiol. Rev. 50: 428-451.
    • (1986) Microbiol. Rev , vol.50 , pp. 428-451
    • King, T.C.1    Sirdeskmukh, R.2    Schlessinger, D.3
  • 22
    • 0024206114 scopus 로고
    • Differential effects of mutations in the protein and RNA moieties of RNase P on the efficiency of suppression by various tRNA suppressors
    • Kirsebom, L.A., Baer, M.F., and Altman, S. 1988. Differential effects of mutations in the protein and RNA moieties of RNase P on the efficiency of suppression by various tRNA suppressors. J. Mol. Biol. 204: 879-888.
    • (1988) J. Mol. Biol , vol.204 , pp. 879-888
    • Kirsebom, L.A.1    Baer, M.F.2    Altman, S.3
  • 23
    • 0032189275 scopus 로고    scopus 로고
    • DNA gyrase and topoisomerase IV: Biochemical activities, physiological roles during chromosome replication, and drug sensitivities
    • Levine, C., Hiasa, H., and Marians, K.J. 1998. DNA gyrase and topoisomerase IV: Biochemical activities, physiological roles during chromosome replication, and drug sensitivities. Biochim. Biophys. Acta 1400: 29-43.
    • (1998) Biochim. Biophys. Acta , vol.1400 , pp. 29-43
    • Levine, C.1    Hiasa, H.2    Marians, K.J.3
  • 24
    • 0036500552 scopus 로고    scopus 로고
    • RNA quality control: Degradation of defective transfer RNA
    • Li, Z., Reimers, S., Pandit, S., and Deutscher, M.P. 2002. RNA quality control: Degradation of defective transfer RNA. EMBO J. 21: 1132-1138.
    • (2002) EMBO J , vol.21 , pp. 1132-1138
    • Li, Z.1    Reimers, S.2    Pandit, S.3    Deutscher, M.P.4
  • 25
    • 0030743084 scopus 로고    scopus 로고
    • The effects of mutations in the rpmB,G operon of Escherichia coli on ribosome assembly and ribosomal protein synthesis
    • Maguire, B.A. and Wild, D.G. 1997. The effects of mutations in the rpmB,G operon of Escherichia coli on ribosome assembly and ribosomal protein synthesis. Biochim. Biophys. Acta 1353: 137-147.
    • (1997) Biochim. Biophys. Acta , vol.1353 , pp. 137-147
    • Maguire, B.A.1    Wild, D.G.2
  • 26
    • 0029100702 scopus 로고
    • A new set of useful cloning and expression vectors derived from pBlueScript
    • Mayer, M.P. 1995. A new set of useful cloning and expression vectors derived from pBlueScript. Gene 163: 41-46.
    • (1995) Gene , vol.163 , pp. 41-46
    • Mayer, M.P.1
  • 27
    • 33645775569 scopus 로고    scopus 로고
    • An algorithmic framework for genome-wide modeling and analysis of translation networks
    • Mehra, A. and Hatzimanikatis, V. 2006. An algorithmic framework for genome-wide modeling and analysis of translation networks. Biophys. J. 90: 1136-1146.
    • (2006) Biophys. J , vol.90 , pp. 1136-1146
    • Mehra, A.1    Hatzimanikatis, V.2
  • 28
    • 4344668509 scopus 로고    scopus 로고
    • Translation arrest of SecM is essential for the basal and regulated expression of SecA
    • Murakami, A., Nakatogawa, H., and Ito, K. 2004. Translation arrest of SecM is essential for the basal and regulated expression of SecA. Proc. Natl. Acad. Sci. 101: 12330-12335.
    • (2004) Proc. Natl. Acad. Sci , vol.101 , pp. 12330-12335
    • Murakami, A.1    Nakatogawa, H.2    Ito, K.3
  • 29
    • 0021155247 scopus 로고
    • Regulation of the synthesis of ribosomes and ribosomal components
    • Nomura, M., Gourse, R., and Baughman, G. 1984. Regulation of the synthesis of ribosomes and ribosomal components. Annu. Rev. Biochem. 53: 75-117.
    • (1984) Annu. Rev. Biochem , vol.53 , pp. 75-117
    • Nomura, M.1    Gourse, R.2    Baughman, G.3
  • 30
    • 0742289608 scopus 로고    scopus 로고
    • Use of computer-designed group II introns to disrupt Escherichia coli DExH/D-box protein and DNA helicase genes
    • Perutka, J., Wang, W., Goerlitz, D., and Lambowitz, A.M. 2004. Use of computer-designed group II introns to disrupt Escherichia coli DExH/D-box protein and DNA helicase genes. J. Mol. Biol. 336: 421-439.
    • (2004) J. Mol. Biol , vol.336 , pp. 421-439
    • Perutka, J.1    Wang, W.2    Goerlitz, D.3    Lambowitz, A.M.4
  • 31
    • 1542344429 scopus 로고    scopus 로고
    • DEAD-box proteins: The driving forces behind RNA metabolism
    • Rocak, S. and Linder, P. 2004. DEAD-box proteins: The driving forces behind RNA metabolism. Nat. Rev. Mol. Cell Biol. 5: 232-241.
    • (2004) Nat. Rev. Mol. Cell Biol , vol.5 , pp. 232-241
    • Rocak, S.1    Linder, P.2
  • 32
    • 0033575660 scopus 로고    scopus 로고
    • SsrA-mediated peptide tagging caused by rare codons and tRNA scarcity
    • Roche, E.D. and Sauer, R.T. 1999. SsrA-mediated peptide tagging caused by rare codons and tRNA scarcity. EMBO J. 18: 4579-4589.
    • (1999) EMBO J , vol.18 , pp. 4579-4589
    • Roche, E.D.1    Sauer, R.T.2
  • 33
    • 4344642721 scopus 로고    scopus 로고
    • The Escherichia coli argU10(Ts) phenotype is caused by a reduction in the cellular level of the argU tRNA for the rare codons AGA and AGG
    • Sakamoto, K., Ishimaru, S., Kobayashi, T., Walker, J.R., and Yokoyama, S. 2004. The Escherichia coli argU10(Ts) phenotype is caused by a reduction in the cellular level of the argU tRNA for the rare codons AGA and AGG. J. Bacteriol. 186: 5899-5905.
    • (2004) J. Bacteriol , vol.186 , pp. 5899-5905
    • Sakamoto, K.1    Ishimaru, S.2    Kobayashi, T.3    Walker, J.R.4    Yokoyama, S.5
  • 34
    • 0016387796 scopus 로고
    • Accumulation of 30S preribosomal ribonucleic acid in an Escherichia coli mutant treated with chloramphenicol
    • Schlessinger, D., Ono, M., Nikolaev, N., and Silengo, L. 1974. Accumulation of 30S preribosomal ribonucleic acid in an Escherichia coli mutant treated with chloramphenicol. Biochemistry 13: 4268-4271.
    • (1974) Biochemistry , vol.13 , pp. 4268-4271
    • Schlessinger, D.1    Ono, M.2    Nikolaev, N.3    Silengo, L.4
  • 35
    • 27644437758 scopus 로고    scopus 로고
    • Rep helicase suppresses short-homology-dependent illegitimate recombination in Escherichia coli
    • Shiraishi, K., Imai, Y., Yoshizaki, S., and Ikeda, H. 2005. Rep helicase suppresses short-homology-dependent illegitimate recombination in Escherichia coli. Genes Cells 10: 1015-1023.
    • (2005) Genes Cells , vol.10 , pp. 1015-1023
    • Shiraishi, K.1    Imai, Y.2    Yoshizaki, S.3    Ikeda, H.4
  • 36
    • 0023767492 scopus 로고
    • Coregulation of processing and translation: Mature 59′ termini of Escherichia coli 23S ribosomal RNA form in polysomes
    • Srivastava, A.K. and Schlessinger, D. 1988. Coregulation of processing and translation: Mature 59′ termini of Escherichia coli 23S ribosomal RNA form in polysomes. Proc. Natl. Acad. Sci. 85: 7144-7148.
    • (1988) Proc. Natl. Acad. Sci , vol.85 , pp. 7144-7148
    • Srivastava, A.K.1    Schlessinger, D.2
  • 37
    • 0025153770 scopus 로고
    • Mechanism and regulation of bacterial ribosomal RNA processing
    • Srivastava, A.K. and Schlessinger, D. 1990. Mechanism and regulation of bacterial ribosomal RNA processing. Annu. Rev. Microbiol. 44: 105-129.
    • (1990) Annu. Rev. Microbiol , vol.44 , pp. 105-129
    • Srivastava, A.K.1    Schlessinger, D.2
  • 38
    • 0034857262 scopus 로고    scopus 로고
    • DExD/H box RNA helicases: From generic motors to specific dissociation functions
    • Tanner, N.K. and Linder, P. 2001. DExD/H box RNA helicases: From generic motors to specific dissociation functions. Mol. Cell 8: 251-262.
    • (2001) Mol. Cell , vol.8 , pp. 251-262
    • Tanner, N.K.1    Linder, P.2
  • 39
    • 0037321039 scopus 로고    scopus 로고
    • After the ribosome structures: How are the subunits assembled?
    • Williamson, J.R. 2003. After the ribosome structures: How are the subunits assembled? RNA 9: 165-167.
    • (2003) RNA , vol.9 , pp. 165-167
    • Williamson, J.R.1


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