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Volumn 43, Issue 2, 2007, Pages 596-604

Obligatory group I introns with unusual features at positions 1949 and 2449 in nuclear LSU rDNA of Didymiaceae myxomycetes

Author keywords

Diderma; Didymium; Group I intron; Intron evolution; Lepidoderma; Myxomycete; Ribosomal DNA; Taxonomy

Indexed keywords

PROTOZOAL DNA; RIBOSOME DNA;

EID: 33947668830     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2006.11.004     Document Type: Article
Times cited : (20)

References (33)
  • 1
    • 3042848954 scopus 로고    scopus 로고
    • Crystal structure of a self-splicing group I intron with both exons
    • Adams P.L., Stahley M.R., Kosek A.B., Wang J., and Strobel S.A. Crystal structure of a self-splicing group I intron with both exons. Nature 430 (2004) 45-50
    • (2004) Nature , vol.430 , pp. 45-50
    • Adams, P.L.1    Stahley, M.R.2    Kosek, A.B.3    Wang, J.4    Strobel, S.A.5
  • 2
    • 0029616336 scopus 로고
    • Mechanism of intron mobility
    • Belfort M., and Perlman P.S. Mechanism of intron mobility. J. Biol. Chem. 270 (1995) 30237-30240
    • (1995) J. Biol. Chem. , vol.270 , pp. 30237-30240
    • Belfort, M.1    Perlman, P.S.2
  • 3
    • 0034869058 scopus 로고    scopus 로고
    • Group I intron lateral transfer between red and brown algal ribosomal RNA
    • Bhattacharya D., Cannone J.J., and Gutell R.R. Group I intron lateral transfer between red and brown algal ribosomal RNA. Curr. Genet. 40 (2001) 82-90
    • (2001) Curr. Genet. , vol.40 , pp. 82-90
    • Bhattacharya, D.1    Cannone, J.J.2    Gutell, R.R.3
  • 4
    • 0025367254 scopus 로고
    • Self-splicing of group I introns
    • Cech T.R. Self-splicing of group I introns. Annu. Rev. Biochem. 59 (1990) 543-568
    • (1990) Annu. Rev. Biochem. , vol.59 , pp. 543-568
    • Cech, T.R.1
  • 5
    • 0035883706 scopus 로고    scopus 로고
    • Homing endonucleases: structural and functional insight into the catalysts of intron/intein mobility
    • Chevalier B.S., and Stoddard B.L. Homing endonucleases: structural and functional insight into the catalysts of intron/intein mobility. Nucleic Acids Res. 29 (2001) 3757-3774
    • (2001) Nucleic Acids Res. , vol.29 , pp. 3757-3774
    • Chevalier, B.S.1    Stoddard, B.L.2
  • 6
    • 0029115635 scopus 로고
    • Two group I ribozymes with different functions in a nuclear rDNA intron
    • Decatur W.A., Einvik C., Johansen S., and Vogt V.M. Two group I ribozymes with different functions in a nuclear rDNA intron. EMBO J. 14 (1995) 4558-4568
    • (1995) EMBO J. , vol.14 , pp. 4558-4568
    • Decatur, W.A.1    Einvik, C.2    Johansen, S.3    Vogt, V.M.4
  • 7
    • 8644229237 scopus 로고    scopus 로고
    • Structure of the Tetrahymena ribozyme: base triple sandwich and metal ion at the active site
    • Guo F., Gooding A.R., and Cech T.R. Structure of the Tetrahymena ribozyme: base triple sandwich and metal ion at the active site. Mol. Cell 16 (2004) 351-362
    • (2004) Mol. Cell , vol.16 , pp. 351-362
    • Guo, F.1    Gooding, A.R.2    Cech, T.R.3
  • 8
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall T.A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl. Acids Symp. Ser. 41 (1999) 95-98
    • (1999) Nucl. Acids Symp. Ser. , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 9
    • 0033390654 scopus 로고    scopus 로고
    • Complex group I introns in nuclear SSU rDNA of red and green algae: evidence of homing-endonuclease pseudogenes in the Bangiophyceae
    • Haugen P., Huss V.A.R., Nielsen H., and Johansen S. Complex group I introns in nuclear SSU rDNA of red and green algae: evidence of homing-endonuclease pseudogenes in the Bangiophyceae. Curr. Genet. 36 (1999) 345-353
    • (1999) Curr. Genet. , vol.36 , pp. 345-353
    • Haugen, P.1    Huss, V.A.R.2    Nielsen, H.3    Johansen, S.4
  • 10
    • 0036231084 scopus 로고    scopus 로고
    • Characterization of the self-splicing products of two complex Naegleria LSU rDNA group I introns containing homing endonuclease genes
    • Haugen P., De Jonckheere J.F., and Johansen S. Characterization of the self-splicing products of two complex Naegleria LSU rDNA group I introns containing homing endonuclease genes. Eur. J. Biochem. 269 (2002) 1641-1649
    • (2002) Eur. J. Biochem. , vol.269 , pp. 1641-1649
    • Haugen, P.1    De Jonckheere, J.F.2    Johansen, S.3
  • 11
    • 0041976963 scopus 로고    scopus 로고
    • The molecular evolution and structural organization of self-splicing group I introns at position 516 in nuclear SSU rDNA of myxomycetes
    • Haugen P., Coucheron D.H., Rønning S.B., Haugli K., and Johansen S. The molecular evolution and structural organization of self-splicing group I introns at position 516 in nuclear SSU rDNA of myxomycetes. J. Eukaryot. Microbiol. 50 (2003) 283-292
    • (2003) J. Eukaryot. Microbiol. , vol.50 , pp. 283-292
    • Haugen, P.1    Coucheron, D.H.2    Rønning, S.B.3    Haugli, K.4    Johansen, S.5
  • 12
    • 3042625933 scopus 로고    scopus 로고
    • Long-term evolution of the S788 fungal nuclear small subunit rRNA group I introns
    • Haugen P., Runge H.J., and Bhattacharya D. Long-term evolution of the S788 fungal nuclear small subunit rRNA group I introns. RNA 10 (2004) 1084-1096
    • (2004) RNA , vol.10 , pp. 1084-1096
    • Haugen, P.1    Runge, H.J.2    Bhattacharya, D.3
  • 15
    • 0034849408 scopus 로고    scopus 로고
    • MrBayes: Bayesian inference of phylogeny
    • Huelsenbeck J.P., and Ronquist F. MrBayes: Bayesian inference of phylogeny. Bioinformatics 17 (2001) 754-755
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 16
    • 0028208494 scopus 로고
    • An intron in the nuclear ribosomal DNA of Didymium iridis codes for a group I ribozyme and a novel ribozyme that cooperate in self-splicing
    • Johansen S., and Vogt V.M. An intron in the nuclear ribosomal DNA of Didymium iridis codes for a group I ribozyme and a novel ribozyme that cooperate in self-splicing. Cell 25 (1994) 725-734
    • (1994) Cell , vol.25 , pp. 725-734
    • Johansen, S.1    Vogt, V.M.2
  • 17
    • 0026713654 scopus 로고
    • Structure and evolution of myxomycete nuclear group I introns: a model for horizontal transfer by intron homing
    • Johansen S., Johansen T., and Haugli F. Structure and evolution of myxomycete nuclear group I introns: a model for horizontal transfer by intron homing. Curr. Genet. 22 (1992) 297-304
    • (1992) Curr. Genet. , vol.22 , pp. 297-304
    • Johansen, S.1    Johansen, T.2    Haugli, F.3
  • 18
    • 0026702968 scopus 로고
    • Extrachromosomal ribosomal DNA of Didymium iridis: sequence analysis of the large subunit ribosomal RNA gene and sub-telomeric region
    • Johansen S., Johansen T., and Haugli F. Extrachromosomal ribosomal DNA of Didymium iridis: sequence analysis of the large subunit ribosomal RNA gene and sub-telomeric region. Curr. Genet. 22 (1992) 305-312
    • (1992) Curr. Genet. , vol.22 , pp. 305-312
    • Johansen, S.1    Johansen, T.2    Haugli, F.3
  • 19
    • 0025707121 scopus 로고
    • An ancient group I intron shared by eubacteria and chloroplasts
    • Kuhsel M.G., Strickland R., and Palmer J.D. An ancient group I intron shared by eubacteria and chloroplasts. Science 250 (1990) 1570-1573
    • (1990) Science , vol.250 , pp. 1570-1573
    • Kuhsel, M.G.1    Strickland, R.2    Palmer, J.D.3
  • 20
    • 0030452773 scopus 로고    scopus 로고
    • New loop-loop tertiary interactions in self-splicing introns of subgroup IC and ID: a complete 3D model of the Tetrahymena thermophila ribozyme
    • Lehnert V., Jaeger L., Michel F., and Westhof E. New loop-loop tertiary interactions in self-splicing introns of subgroup IC and ID: a complete 3D model of the Tetrahymena thermophila ribozyme. Chem. Biol. 3 (1996) 993-1009
    • (1996) Chem. Biol. , vol.3 , pp. 993-1009
    • Lehnert, V.1    Jaeger, L.2    Michel, F.3    Westhof, E.4
  • 21
    • 3042546667 scopus 로고    scopus 로고
    • Twelve group I introns in the same pre-rRNA transcript of the myxomycete Fuligo septica: RNA processing and evolution
    • Lundblad E.W., Einvik C., Ronning S., Haugli K., and Johansen S. Twelve group I introns in the same pre-rRNA transcript of the myxomycete Fuligo septica: RNA processing and evolution. Mol. Biol. Evol. 21 (2004) 1283-1293
    • (2004) Mol. Biol. Evol. , vol.21 , pp. 1283-1293
    • Lundblad, E.W.1    Einvik, C.2    Ronning, S.3    Haugli, K.4    Johansen, S.5
  • 22
    • 0034882882 scopus 로고    scopus 로고
    • A structural and phylogenetic analysis of the group IC1 introns in the order Bangiales (Rhodophyta)
    • Müller K.M., Cannone J.J., Gutell R.R., and Sheath R.G. A structural and phylogenetic analysis of the group IC1 introns in the order Bangiales (Rhodophyta). Mol. Biol. Evol. 18 (2001) 1654-1667
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 1654-1667
    • Müller, K.M.1    Cannone, J.J.2    Gutell, R.R.3    Sheath, R.G.4
  • 23
    • 0024966071 scopus 로고
    • A mobile group I intron in the nuclear rDNA of Physarum polycephalum
    • Muscarella D.E., and Vogt V.M. A mobile group I intron in the nuclear rDNA of Physarum polycephalum. Cell 56 (1989) 443-454
    • (1989) Cell , vol.56 , pp. 443-454
    • Muscarella, D.E.1    Vogt, V.M.2
  • 24
    • 0031773680 scopus 로고    scopus 로고
    • Modeltest: testing the model of DNA substitution
    • Posada D., and Crandall K.A. Modeltest: testing the model of DNA substitution. Bioinformatics 14 (1998) 817-818
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 25
    • 0041386108 scopus 로고    scopus 로고
    • MRBAYES 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F., and Huelsenbeck J.P. MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19 (2003) 1572-1574
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 26
    • 0026445758 scopus 로고
    • Characterization of the self-splicing products of a mobile intron from the nuclear rDNA of Physarum polycephalum
    • Ruoff B., Johansen S., and Vogt V.M. Characterization of the self-splicing products of a mobile intron from the nuclear rDNA of Physarum polycephalum. Nucleic Acids Res. 20 (1992) 5899-5906
    • (1992) Nucleic Acids Res. , vol.20 , pp. 5899-5906
    • Ruoff, B.1    Johansen, S.2    Vogt, V.M.3
  • 27
    • 0024065068 scopus 로고
    • Non-mendelian inheritance of mitochondrial DNA and ribosomal DNA in the myxomycete Didymium iridis
    • Silliker M.E., and Collins R.O. Non-mendelian inheritance of mitochondrial DNA and ribosomal DNA in the myxomycete Didymium iridis. Mol. Gen. Genet. 213 (1988) 370-378
    • (1988) Mol. Gen. Genet. , vol.213 , pp. 370-378
    • Silliker, M.E.1    Collins, R.O.2
  • 28
    • 0346735286 scopus 로고    scopus 로고
    • Phylogeny and self-splicing ability of the plastid tRNA-Leu group I Intron
    • Simon D., Fewer D., Friedl T., and Bhattacharya D. Phylogeny and self-splicing ability of the plastid tRNA-Leu group I Intron. J. Mol. Evol. 57 (2003) 710-720
    • (2003) J. Mol. Evol. , vol.57 , pp. 710-720
    • Simon, D.1    Fewer, D.2    Friedl, T.3    Bhattacharya, D.4
  • 29
    • 34247602831 scopus 로고    scopus 로고
    • Swofford, D.L. 2002. PAUP*: phylogenetic analysis using parsimony (* and other methods). Version 4.0b8. Sinauer, Sunderland, MA.
  • 30
    • 0028073533 scopus 로고
    • Nucleolar introns from Physarum flavicomum contain insertion elements that may explain how mobile group I introns gained their open reading frames
    • Vader A., Naess J., Haugli K., Haugli F., and Johansen S. Nucleolar introns from Physarum flavicomum contain insertion elements that may explain how mobile group I introns gained their open reading frames. Nucleic Acids Res. 22 (1994) 4553-4559
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4553-4559
    • Vader, A.1    Naess, J.2    Haugli, K.3    Haugli, F.4    Johansen, S.5
  • 31
    • 34247572718 scopus 로고    scopus 로고
    • Wikmark, O-G., Haugen, P., Lundblad, E.W., Haugli, K., Johansen, S.D. in press. The molecular evolution and structural organization of group I introns at position 1389 in nuclear SSU rDNA of myxomycetes. J. Eukaryot. Microbiol. 53.
  • 32
    • 0025707127 scopus 로고
    • Bacterial origin of a chloroplast intron: conserved self-splicing group I introns in cyanobacteria
    • Xu M.Q., Kathe S.D., Goodrich-Blair H., Nierzwicki-Bauer S.A., and Shub D.A. Bacterial origin of a chloroplast intron: conserved self-splicing group I introns in cyanobacteria. Science 250 (1990) 1566-1570
    • (1990) Science , vol.250 , pp. 1566-1570
    • Xu, M.Q.1    Kathe, S.D.2    Goodrich-Blair, H.3    Nierzwicki-Bauer, S.A.4    Shub, D.A.5
  • 33
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 31 (2003) 3406-3415
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3406-3415
    • Zuker, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.