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Volumn 392, Issue 1-2, 2007, Pages 299-305

Molecular evolution of the OrcPI locus in natural populations of Mediterranean orchids

Author keywords

MADS box genes; Nucleotide substitution rate; Orchidaceae; PISTILLATA GLOBOSA

Indexed keywords

ARTICLE; GENE LOCUS; GENETIC SELECTION; MAXIMUM LIKELIHOOD METHOD; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; ORCHIDACEAE; POPULATION GENETICS; PRIORITY JOURNAL; SEQUENCE HOMOLOGY;

EID: 33947608928     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2007.01.005     Document Type: Article
Times cited : (12)

References (45)
  • 1
    • 0033210716 scopus 로고    scopus 로고
    • Phylogeny and evolution of Orchis and allied genera based on ITS DNA variation: morphological gaps and molecular continuity
    • Aceto S., Caputo P., Cozzolino S., Gaudio L., and Moretti A. Phylogeny and evolution of Orchis and allied genera based on ITS DNA variation: morphological gaps and molecular continuity. Mol. Phylogenet. Evol. 13 (1999) 67-76
    • (1999) Mol. Phylogenet. Evol. , vol.13 , pp. 67-76
    • Aceto, S.1    Caputo, P.2    Cozzolino, S.3    Gaudio, L.4    Moretti, A.5
  • 2
    • 27744585200 scopus 로고    scopus 로고
    • From phenotypic to molecular polymorphisms involved in naturally occurring variation of plant development
    • Alonso-Blanco C., Mendez-Vigo B., and Koornneef M. From phenotypic to molecular polymorphisms involved in naturally occurring variation of plant development. Int. J. Dev. Biol. 49 (2005) 717-732
    • (2005) Int. J. Dev. Biol. , vol.49 , pp. 717-732
    • Alonso-Blanco, C.1    Mendez-Vigo, B.2    Koornneef, M.3
  • 3
    • 25144446347 scopus 로고    scopus 로고
    • Molecular evolution of the transcription factor LEAFY in Brassicaceae
    • Baum D.A., Yoon H.S., and Oldham R.L. Molecular evolution of the transcription factor LEAFY in Brassicaceae. Mol. Phylogenet. Evol. 37 (2005) 1-14
    • (2005) Mol. Phylogenet. Evol. , vol.37 , pp. 1-14
    • Baum, D.A.1    Yoon, H.S.2    Oldham, R.L.3
  • 4
    • 16344364319 scopus 로고    scopus 로고
    • Molecular evolution of FLORICAULA/LEAFY orthologs in the Andropogoneae (Poaceae)
    • Bomblies K., and Doebley J.F. Molecular evolution of FLORICAULA/LEAFY orthologs in the Andropogoneae (Poaceae). Mol. Biol. Evol. 22 (2005) 1082-1094
    • (2005) Mol. Biol. Evol. , vol.22 , pp. 1082-1094
    • Bomblies, K.1    Doebley, J.F.2
  • 5
    • 0033150367 scopus 로고    scopus 로고
    • Analysis of the C-terminal region of Arabidopsis thaliana APETALA1 as a transcription activation domain
    • Cho S., et al. Analysis of the C-terminal region of Arabidopsis thaliana APETALA1 as a transcription activation domain. Plant Mol. Biol. 40 (1999) 419-429
    • (1999) Plant Mol. Biol. , vol.40 , pp. 419-429
    • Cho, S.1
  • 6
    • 0031909376 scopus 로고    scopus 로고
    • Phylogenetic relationships in Orchis and some related genera: an approach using chloroplast DNA
    • Cozzolino S., Aceto S., Caputo P., Gaudio L., and Nazzaro R. Phylogenetic relationships in Orchis and some related genera: an approach using chloroplast DNA. Nord. J. Bot. 18 (1998) 79-87
    • (1998) Nord. J. Bot. , vol.18 , pp. 79-87
    • Cozzolino, S.1    Aceto, S.2    Caputo, P.3    Gaudio, L.4    Nazzaro, R.5
  • 7
    • 0032125381 scopus 로고    scopus 로고
    • Transcriptional regulators and the evolution of plant form
    • Doebley J., and Lukens L. Transcriptional regulators and the evolution of plant form. Plant Cell 10 (1998) 1075-1082
    • (1998) Plant Cell , vol.10 , pp. 1075-1082
    • Doebley, J.1    Lukens, L.2
  • 8
    • 0002594984 scopus 로고
    • A rapid DNA isolation procedure for small amounts of leaf tessue
    • Doyle J.J., and Doyle J.L. A rapid DNA isolation procedure for small amounts of leaf tessue. Phytochem. Bull. 19 (1987) 11-15
    • (1987) Phytochem. Bull. , vol.19 , pp. 11-15
    • Doyle, J.J.1    Doyle, J.L.2
  • 9
    • 7444271503 scopus 로고    scopus 로고
    • Heterogeneous evolution of the Myc-like anthocyanin regulatory gene and its phylogenetic utility in Cornus L. (Cornaceae)
    • Fan C., Purugganan M.D., Thomas D.T., Wiegmann B.M., and Xiang Q.Y. Heterogeneous evolution of the Myc-like anthocyanin regulatory gene and its phylogenetic utility in Cornus L. (Cornaceae). Mol. Phylogenet. Evol. 33 (2004) 580-594
    • (2004) Mol. Phylogenet. Evol. , vol.33 , pp. 580-594
    • Fan, C.1    Purugganan, M.D.2    Thomas, D.T.3    Wiegmann, B.M.4    Xiang, Q.Y.5
  • 10
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: an approach using the bootstrap
    • Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39 (1985) 783-791
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 11
    • 0027453041 scopus 로고
    • Statistical tests of neutrality of mutations
    • Fu X.-Y., and Li W.H. Statistical tests of neutrality of mutations. Genetics 133 (1993) 693-709
    • (1993) Genetics , vol.133 , pp. 693-709
    • Fu, X.-Y.1    Li, W.H.2
  • 12
    • 0028364530 scopus 로고
    • Function and regulation of the Arabidopsis floral homeotic gene PISTILLATA
    • Goto K., and Meyerowitz E.M. Function and regulation of the Arabidopsis floral homeotic gene PISTILLATA. Genes Dev. 8 (1994) 1548-1560
    • (1994) Genes Dev. , vol.8 , pp. 1548-1560
    • Goto, K.1    Meyerowitz, E.M.2
  • 13
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall T.A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 41 (1999) 95-98
    • (1999) Nucleic Acids Symp. Ser. , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 14
    • 0023339852 scopus 로고
    • A test of neutral molecular evolution based on nucleotide data
    • Hudson R.R.M., Kreitman M., and Aguadè M. A test of neutral molecular evolution based on nucleotide data. Genetics 116 (1987) 153-159
    • (1987) Genetics , vol.116 , pp. 153-159
    • Hudson, R.R.M.1    Kreitman, M.2    Aguadè, M.3
  • 15
    • 22144453496 scopus 로고    scopus 로고
    • Flower development and evolution: gene duplication, diversification and redeployment
    • Irish V.F., and Litt A. Flower development and evolution: gene duplication, diversification and redeployment. Curr. Opin. Genet. Dev. 15 (2005) 454-460
    • (2005) Curr. Opin. Genet. Dev. , vol.15 , pp. 454-460
    • Irish, V.F.1    Litt, A.2
  • 16
    • 0037306112 scopus 로고    scopus 로고
    • DNA sequence variation in BpMADS2 gene in two populations of Betula pendula
    • Järvinen P., Lemmetynen J., Savolainen O., and Sopanen T. DNA sequence variation in BpMADS2 gene in two populations of Betula pendula. Mol. Ecol. 12 (2003) 369-384
    • (2003) Mol. Ecol. , vol.12 , pp. 369-384
    • Järvinen, P.1    Lemmetynen, J.2    Savolainen, O.3    Sopanen, T.4
  • 18
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • Munro H.N. (Ed), Academic Press, New York
    • Jukes T.H., and Cantor R.C. Evolution of protein molecules. In: Munro H.N. (Ed). Mammalian Protein Metabolism (1969), Academic Press, New York 21-123
    • (1969) Mammalian Protein Metabolism , pp. 21-123
    • Jukes, T.H.1    Cantor, R.C.2
  • 19
    • 0031799916 scopus 로고    scopus 로고
    • Molecular evolution of genes controlling petal and stamen development: duplication and divergence within the APETALA3 and PISTILLATA MADS box gene lineages
    • Kramer E., Dorit R., and Irish V. Molecular evolution of genes controlling petal and stamen development: duplication and divergence within the APETALA3 and PISTILLATA MADS box gene lineages. Genetics 149 (1998) 765-783
    • (1998) Genetics , vol.149 , pp. 765-783
    • Kramer, E.1    Dorit, R.2    Irish, V.3
  • 20
    • 3242810318 scopus 로고    scopus 로고
    • MEGA3: integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment
    • Kumar S., Tamura K., and Nei M. MEGA3: integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. Brief. Bioinform. 5 (2004) 150-163
    • (2004) Brief. Bioinform. , vol.5 , pp. 150-163
    • Kumar, S.1    Tamura, K.2    Nei, M.3
  • 21
    • 0037637502 scopus 로고    scopus 로고
    • Functional divergence within the APETALA3/PISTILLATA floral homeotic gene lineages
    • Lamb R.S., and Irish V.F. Functional divergence within the APETALA3/PISTILLATA floral homeotic gene lineages. Proc. Natl. Acad. Sci. U. S. A. 100 (2003) 6558-6563
    • (2003) Proc. Natl. Acad. Sci. U. S. A. , vol.100 , pp. 6558-6563
    • Lamb, R.S.1    Irish, V.F.2
  • 22
    • 0026428610 scopus 로고
    • Adaptive protein evolution at the Adh locus in Drosophila
    • McDonald J., and Kreitman M. Adaptive protein evolution at the Adh locus in Drosophila. Nature 351 (1991) 652-654
    • (1991) Nature , vol.351 , pp. 652-654
    • McDonald, J.1    Kreitman, M.2
  • 23
    • 2942627520 scopus 로고    scopus 로고
    • Isolation of the LFY/FLO homologue in Orchis italica and evolutionary analysis in some European orchids species
    • Montieri S., Gaudio L., and Aceto S. Isolation of the LFY/FLO homologue in Orchis italica and evolutionary analysis in some European orchids species. Gene 333 (2004) 101-109
    • (2004) Gene , vol.333 , pp. 101-109
    • Montieri, S.1    Gaudio, L.2    Aceto, S.3
  • 24
    • 0022507362 scopus 로고
    • Simple methods for estimating the numbers of synonymous and non-synonymous nucleotide substitutions
    • Nei M., and Gojobori T. Simple methods for estimating the numbers of synonymous and non-synonymous nucleotide substitutions. Mol. Biol. Evol. 3 (1986) 418-426
    • (1986) Mol. Biol. Evol. , vol.3 , pp. 418-426
    • Nei, M.1    Gojobori, T.2
  • 25
    • 0036240921 scopus 로고    scopus 로고
    • Contrasting evolutionary forces in the Arabidopsis thaliana floral developmental pathway
    • Olsen K.M., Womack A., Garrett A.R., Suddith J.I., and Purugganan M.D. Contrasting evolutionary forces in the Arabidopsis thaliana floral developmental pathway. Genetics 160 (2002) 1641-1650
    • (2002) Genetics , vol.160 , pp. 1641-1650
    • Olsen, K.M.1    Womack, A.2    Garrett, A.R.3    Suddith, J.I.4    Purugganan, M.D.5
  • 26
    • 0032170282 scopus 로고    scopus 로고
    • The molecular evolution of development
    • Purugganan M.D. The molecular evolution of development. BioEssays 20 (1998) 700-711
    • (1998) BioEssays , vol.20 , pp. 700-711
    • Purugganan, M.D.1
  • 27
    • 0032912347 scopus 로고    scopus 로고
    • Molecular population genetics of floral homeotic loci: departure from the equilibrium-neutral model at the APETALA3 and PISTILLATA genes of Arabidopsis thaliana
    • Purugganan M.D., and Suddith J.I. Molecular population genetics of floral homeotic loci: departure from the equilibrium-neutral model at the APETALA3 and PISTILLATA genes of Arabidopsis thaliana. Genetics 151 (1999) 839-848
    • (1999) Genetics , vol.151 , pp. 839-848
    • Purugganan, M.D.1    Suddith, J.I.2
  • 28
    • 0027999783 scopus 로고
    • Molecular evolution of the plant R regulatory gene family
    • Purugganan M.D., and Wessler S.R. Molecular evolution of the plant R regulatory gene family. Genetics 138 (1994) 849-854
    • (1994) Genetics , vol.138 , pp. 849-854
    • Purugganan, M.D.1    Wessler, S.R.2
  • 29
    • 1542286742 scopus 로고    scopus 로고
    • Heterogeneous selection on LEGCYC paralogs in relation to flower morphology and the phylogeny of Lupinus (Leguminose)
    • Ree R.H., Citerne H.L., Lavin M., and Cronk Q.C.B. Heterogeneous selection on LEGCYC paralogs in relation to flower morphology and the phylogeny of Lupinus (Leguminose). Mol. Biol. Evol. 21 (2004) 321-331
    • (2004) Mol. Biol. Evol. , vol.21 , pp. 321-331
    • Ree, R.H.1    Citerne, H.L.2    Lavin, M.3    Cronk, Q.C.B.4
  • 30
    • 0347513220 scopus 로고    scopus 로고
    • DnaSP, DNA polymorphism analyses by the coalescent and other methods
    • Rozas J., Sanchez-DelBarrio J.C., Messeguer X., and Rozas R. DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19 (2003) 2496-2497
    • (2003) Bioinformatics , vol.19 , pp. 2496-2497
    • Rozas, J.1    Sanchez-DelBarrio, J.C.2    Messeguer, X.3    Rozas, R.4
  • 31
    • 0032901959 scopus 로고    scopus 로고
    • Low levels of nucleotide diversity at homoeologous Adh loci in allotetraploid cotton (Gossypium L.)
    • Small R.L., Ryburn J.A., and Wendel J.F. Low levels of nucleotide diversity at homoeologous Adh loci in allotetraploid cotton (Gossypium L.). Mol. Biol. Evol. 16 (1999) 491-501
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 491-501
    • Small, R.L.1    Ryburn, J.A.2    Wendel, J.F.3
  • 32
    • 33947603288 scopus 로고    scopus 로고
    • *and other methods). Version 4. Sinauer Associates, Sunderland, Mass.
  • 33
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • Tajima F. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123 (1989) 585-595
    • (1989) Genetics , vol.123 , pp. 585-595
    • Tajima, F.1
  • 34
    • 0035945562 scopus 로고    scopus 로고
    • Plant biology. Floral quartets
    • Theissen G., and Saedler H. Plant biology. Floral quartets. Nature 409 (2001) 469-471
    • (2001) Nature , vol.409 , pp. 469-471
    • Theissen, G.1    Saedler, H.2
  • 35
    • 0027064855 scopus 로고
    • GLOBOSA: a homeotic gene which interacts with DEFICIENS in the control of Antirrhinum floral organogenesis
    • Trobner W., et al. GLOBOSA: a homeotic gene which interacts with DEFICIENS in the control of Antirrhinum floral organogenesis. EMBO J. 11 (1992) 4693-4704
    • (1992) EMBO J. , vol.11 , pp. 4693-4704
    • Trobner, W.1
  • 36
    • 25444495630 scopus 로고    scopus 로고
    • PeMADS6, a GLOBOSA/PISTILLATA-like gene in Phalaenopsis equestris involved in petaloids formation, and correlated with flower longevity and ovary development
    • Tsai W.C., et al. PeMADS6, a GLOBOSA/PISTILLATA-like gene in Phalaenopsis equestris involved in petaloids formation, and correlated with flower longevity and ovary development. Plant Cell Physiol. 46 (2005) 1125-1139
    • (2005) Plant Cell Physiol. , vol.46 , pp. 1125-1139
    • Tsai, W.C.1
  • 37
    • 0003884973 scopus 로고
    • Cambridge University Press, Cambridge
    • Tutin T.G., et al. Flora Europaea (1964-1993), Cambridge University Press, Cambridge
    • (1964) Flora Europaea
    • Tutin, T.G.1
  • 38
    • 0035094235 scopus 로고    scopus 로고
    • Low density and divergence in the fil 1 gene family of Antirrhinum (Scrophulariaceae)
    • Vieira C.P., and Charlesworth D. Low density and divergence in the fil 1 gene family of Antirrhinum (Scrophulariaceae). J. Mol. Evol. 52 (2001) 171-181
    • (2001) J. Mol. Evol. , vol.52 , pp. 171-181
    • Vieira, C.P.1    Charlesworth, D.2
  • 39
    • 33646843778 scopus 로고    scopus 로고
    • Floral organ identity genes in the orchid Dendrobium crumenatum
    • Xu Y., Teo L.L., Zhou J., Kumar P.P., and Yu H. Floral organ identity genes in the orchid Dendrobium crumenatum. Plant J. 46 (2006) 54-68
    • (2006) Plant J. , vol.46 , pp. 54-68
    • Xu, Y.1    Teo, L.L.2    Zhou, J.3    Kumar, P.P.4    Yu, H.5
  • 40
    • 0030683599 scopus 로고    scopus 로고
    • PAML: a programme package for phylogenetic analysis by maximum likelihood
    • Yang Z. PAML: a programme package for phylogenetic analysis by maximum likelihood. CABIOS 13 (1997) 555-556
    • (1997) CABIOS , vol.13 , pp. 555-556
    • Yang, Z.1
  • 41
    • 0033639150 scopus 로고    scopus 로고
    • Statistical methods for detecting molecular adaptation
    • Yang Z., and Bielawski J.P. Statistical methods for detecting molecular adaptation. Trends Ecol. Evol. 15 (2000) 496-503
    • (2000) Trends Ecol. Evol. , vol.15 , pp. 496-503
    • Yang, Z.1    Bielawski, J.P.2
  • 42
    • 12744274910 scopus 로고    scopus 로고
    • Defining subdomains of the K domain important for protein-protein interactions of plant MADS proteins
    • Yang Y., and Jack T. Defining subdomains of the K domain important for protein-protein interactions of plant MADS proteins. Plant Mol. Biol. 55 (2004) 45-59
    • (2004) Plant Mol. Biol. , vol.55 , pp. 45-59
    • Yang, Y.1    Jack, T.2
  • 43
    • 0034097381 scopus 로고    scopus 로고
    • Codon-substitution models for heterogeneous selection pressure at amino acid sites
    • Yang Z., Nielsen N., Goldman N., and Pedersen A.M. Codon-substitution models for heterogeneous selection pressure at amino acid sites. Genetics 155 (2000) 431-449
    • (2000) Genetics , vol.155 , pp. 431-449
    • Yang, Z.1    Nielsen, N.2    Goldman, N.3    Pedersen, A.M.4
  • 44
    • 16344378246 scopus 로고    scopus 로고
    • Bayes empirical Bayes inference of amino acid sites under positive selection
    • Yang Z., Wong W.S., and Nielsen R. Bayes empirical Bayes inference of amino acid sites under positive selection. Mol. Biol. Evol. 22 (2005) 1107-1118
    • (2005) Mol. Biol. Evol. , vol.22 , pp. 1107-1118
    • Yang, Z.1    Wong, W.S.2    Nielsen, R.3
  • 45
    • 27844439855 scopus 로고    scopus 로고
    • Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level
    • Zhang J., Nielsen R., and Yang Z. Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level. Mol. Biol. Evol. 22 (2005) 2472-2479
    • (2005) Mol. Biol. Evol. , vol.22 , pp. 2472-2479
    • Zhang, J.1    Nielsen, R.2    Yang, Z.3


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