Packing and loop-structure variations in non-isomorphous crystals of FabZ from Plasmodium falciparum

Acta Crystallographica Section D: Biological Crystallography

Volumn 63, Issue 4, 2007, Pages 458-464

  Swarnamukhi, Pidugu Lakshmi ^a   Sharma, Shailendra Kumar ^a   Padala, Prasanth ^a   Surolia, Namita ^b   Surolia, Avadhesha ^a,c   Suguna, Kaza ^a  

^a INDIAN INSTITUTE OF SCIENCE   (India)

^b JAWAHARLAL NEHRU CENTRE FOR ADVANCED SCIENTIFIC RESEARCH   (India)

^c NATIONAL INSTITUTE OF IMMUNOLOGY   (India)

Author keywords

Crystal packing; FabZ; Loop structure; Non isomorphism

Indexed keywords

PROTOZOAL PROTEIN;

ANIMAL; ARTICLE; BINDING SITE; CHEMICAL STRUCTURE; CHEMISTRY; CRYSTALLIZATION; DIMERIZATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; METABOLISM; PLASMODIUM FALCIPARUM; PROTEIN CONFORMATION; X RAY CRYSTALLOGRAPHY;

ANIMALS; BINDING SITES; CRYSTALLIZATION; CRYSTALLOGRAPHY, X-RAY; DIMERIZATION; MODELS, MOLECULAR; PLASMODIUM FALCIPARUM; PROTEIN CONFORMATION; PROTOZOAN PROTEINS;

PLASMODIUM FALCIPARUM;

EID: 33947492341     PISSN: 09074449     EISSN: 13990047     Source Type: Journal    
DOI: 10.1107/S0907444907003228     Document Type: Article

References (25)

1. Brock, D. J., Kass, L. R. & Bloch, K. (1967). J. Biol. Chem. 242, 4432-4440.
2. Brodersen, D. E., Clemons, W. M. Jr, Carter, A. P., Wimberly, B. T. & Ramakrishnan, V. (2003). Acta Cryst. D59, 2044-2050.
3. Brünger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J.-S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T. & Warren, G. L. (1998). Acta Cryst. D54, 905-921.
4. Cohen, G. H. (1997). J. Appl. Cryst. 30, 1160-1161.
5. Collaborative Computational Project, Number 4 (1994). Acta Cryst. D50, 760-763.
6. Dauter, Z., Botos, I., La Ronde-Le Blanc, N. & Wlodawer, A. (2005). Acta Cryst. D61, 967-975.
7. DeLano, W. L. (2002). The PyMOL Molecular Graphics System. DeLano Scientific, San Carlos, USA http://www.pymol.org.
8. Dillon, S. C. & Bateman, A. (2004). BMC Bioinformatics, 5, 109.
9. Emsley, P. & Cowtan, K. (2004). Acta Cryst. D60, 2126-2132.
10. Heath, R. J. & Rock, C. O. (1996). J. Biol. Chem. 271, 27795-27801.
11. Heras, B. & Martin, J. L. (2005). Acta Cryst. D61, 1173-1180.
12. Kimber, M. S., Martin, F., Lu, Y., Houston, S., Vedadi, M., Dharamsi, A., Fiebig, K. M., Schmid, M. & Rock, C. O. (2004). J. Biol. Chem. 279, 52593-52602.
13. Kostrewa, D., Winkler, F. K., Folkers, G., Scapozza, L. & Perozzo, R. (2005). Protein Sci. 14, 1570-1580.
14. Laskowski, R. A., MacArthur, M. W., Moss, D. S. & Thornton, J. M. (1993). J. Appl. Cryst. 26, 283-291.
15. Leesong, M., Henderson, B. S., Gillig, J. R., Schwab, J. M. & Smith, J. L. (1996). Structure, 4, 253-264.
16. Mukhi, P. L. S., Sharma, S. K., Kapoor, M., Surolia, N., Surolia, A. & Suguna, K. (2004). Acta Cryst. D60, 120-121.
17. Otwinowski, Z. & Minor, W. (1997). Methods Enzymol. 267, 307-326.
18. Raetz, C. R. H. (1990). Annu. Rev. Biochem. 59, 129-170.
19. Randal, M. & Kossiakoff, A. A. (2000). Acta Cryst. D56, 14-24.
20. Redinbo, M. R., Stewart, L., Champoux, J. J. & Hol, W. G. J. (1999). J. Mol. Biol. 292, 685-696.
21. Rock, C. O. & Cronan, J. E. (1996). Biochim. Biophys. Acta, 1302, 1-16.
22. Sharma, S. K., Kapoor, M., Ramya, T. N. C., Kumar, S., Kumar, G., Modak, R., Sharma, S., Surolia, N. & Suroia, A. (2003). J. Biol. Chem. 278, 45661-45671.
23. Storoni, L. C., McCoy, A. J. & Read, R. J. (2004). Acta Cryst. D60, 432-438.
24. Swarnamukhi, P. L., Sharma, S. K., Bajaj, P., Surolia, N., Surolia, A. & Suguna, K. (2006). FEBS Lett. 580, 2653-2660.
25. Verschueren, K. H. G., Tyrrell, R., Murshudov, G. N., Dodson, E. & Wilkinson, A. J. (1999). Acta Cryst. D55, 369-378.