Phylogeny of Neoparamoeba strains isolated from marine fish and invertebrates as inferred from SSU rDNA sequences

Diseases of Aquatic Organisms

Volumn 74, Issue 1, 2007, Pages 57-65

  Dyková, Iva ^a,b   Nowak, Barbara ^c   Pecková, Hana ^a   Fiala, Ivan ^a,b   Crosbie, Philip ^c   Dvořáková, Helena ^a  

^a INSTITUTE OF PARASITOLOGY   (Czech Republic)

^b UNIVERSITY OF SOUTH BOHEMIA   (Czech Republic)

^c UNIVERSITY OF TASMANIA   (Australia)

Author keywords

Invertebrate infections; Neoparamoeba strains; Paramoeba eilhardi; Phylogeny

Indexed keywords

CLADISTICS; DNA; GENETIC ANALYSIS; IDENTIFICATION METHOD; INVERTEBRATE; PARASITIC DISEASE; PERCIFORM; PHYLOGENY; PROTOZOAN; SALMONID; TAXONOMY; ULTRASTRUCTURE;

ALGAE; DECAPODA (CRUSTACEA); ECHINOIDEA; INVERTEBRATA; NEOPARAMOEBA; NEOPARAMOEBA BRANCHIPHILA; NEOPARAMOEBA PEMAQUIDENSIS; PARAMOEBA; PARAMOEBA EILHARDI; PROTOZOA; SALMO SALAR; SCOMBRIDAE; THUNNUS MACCOYII;

EID: 33947371619     PISSN: 01775103     EISSN: None     Source Type: Journal    
DOI: 10.3354/dao074057     Document Type: Article

References (36)

1. Chatton E (1953) Classe des Lobosa Leidy, 1879. Ordre des Amoebiens nus ou Amoebaea. In: Grassé PP (ed) Traité de Zoologie Tom I, Fasc.II. Masson & Cie., Paris, p 42-46
2. Douglas-Helders M, Nowak B, Zilberg D, Carson J, (2000) Survival of Paramoeba pemaquidensis on dead salmon: implications for management of cage hygiene. Bull Eur Assoc Fish Pathol 20:167-169
3. Dyková I, Figueras A, Novoa B, Fernandez-Casal J (1998) Paramoeba sp., an agent of amoebic gill disease of turbot Scophthalmus maximus. Dis Aquat Org 33:137-141
4. Dyková I, Figueras A, Perič Z (2000) Neoparamoeba Page, 1987: light and electron microscopic observations on six strains of different origin. Dis Aquat Org 43:217-223
5. Dyková I, Fiala I, Lom J, Lukeš J (2003) Perkinsiella amoebae-like endosymbionts of Neoparamoeba spp., relatives of the kinetoplastid Ichthyobodo. Eur J Protistol 39:37-52
6. Dyková I, Boháčová L, Fiala I, Macháčková B, Pecková H, Dvořá ková H (2005a) Amoebae of the genera Vannella Bovee, 1965 and Platyamoeba Page, 1969 isolated from fish and their phylogeny inferred from SSU rRNA gene and ITS sequences. Eur J Protistol 41:219-230
7. Dyková I, Nowak BF, Crosbie PBB, Fiala I, Pecková H, Adams MB, Macháčková B, Dvořáková H (2005b) Neoparamoeba branchiphila n. sp., and related species of the genus Neoparamoeba Page, 1987: morphological and molecular characterization of selected strains. J Fish Dis 28:49-64
8. Felsenstein J (2002) (Phylogeny Inference Package) version 3.6a3. Distributed by author. University of Genome Sciences, Seattle, WA
9. Fiala I, Dyková I (2003) Molecular characterization of Neoparamoeba strains isolated from gills of Scophthalmus maximus. Dis Aquat Org 53:11-16
10. Grell KG (1961) Über den 'Nebenkörper' von Paramoeba eilhardi Schaudinn. Arch Protistenkd 105:303-312
11. Grell KG, Benwitz G (1966) Die Zellhülle von Paramoeba eilhardi Schaudinn. Z Naturforsch 21b:600-601
12. Grell KG, Benwitz G (1970) Ultrastruktur mariner Amöben I. Paramoeba eilhardi Schaudinn. Arch Protistenkd 112:119-137
13. Guindon S, Gascuel O (2003) A simple, fast and accurate algorithm to estimate large phylogenies and maximum likelihood. Syst Biol 52:696-704
14. Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98NT. Nucleic Acids Symp Ser 41:95-98
15. Hollande A (1980) Identification du parasome (Nebenkern) de Janickina pigmentifera à un symbionte (Perkinsella amoebae nov gen-nov sp) apparenté aux flagellés Kinetoplastidiés. Protistologica 16:613-625
16. Jellet JF, Wardlaw AC, Scheibling RE (1988) Experimental infection of the echinoid Strongylocentrotus droebachiensis with Paramoeba invadens: quantitative changes in the coelomic fluid. Dis Aquat Org 4:149-157
17. Johnson PT (1977) Paramoebiasis in the blue crab, Callinectes sapidus. J Invertebr Pathol 29:308-320
18. Jones GM (1985) Paramoeba invadens n. sp. (Amoebidae, Paramoebidae) a pathogenic amoeba from the sea urchin, Strongylocentrotus droebachiensis, in Eastern Canada. J Protozool 32:346-369
19. Kent ML, Sawyer TK, Hedrick RP (1988) Paramoeba pemaquidensis (Sarcomastigophora: Paramoebidae) infestation of the gills of coho salmon Oncorhynchus kisutch reared in sea water. Dis Aquat Org 5:163-169
20. Mullen TE, Russel S, Tucker MT, Maratea JL and 5 others (2004) Paramoebiasis associated with mass mortality of American lobster Homarus americanus in Long Island Sound, USA. J Aquat Anim Health 16:29-38
21. Mullen TE, Nevis KR, O'Kelly CJ, Gast RJ, Frasca S Jr (2005) Nuclear small-subunit ribosomal RNA gene-based characterization, molecular phylogeny and PCR detection of the Neoparamoeba from Western Long Island Sound lobster. J Shellfish Res 24:719-731
22. Munday BL, Foster CK, Roubal FR, Lester RJG (1990) Paramoebic gill infection and associated pathology of Atlantic salmon, Salmo salar, and rainbow trout, Salmo gairdneri, in Tasmania. In: Perkins FO, Cheng TC (eds) Pathology in marine science. Academic Press, New York, NY, p 215-222
23. Nylander JAA, Ronquist F, Huelsenbeck JP, Nieves-Aldrey JL (2004) Bayesian phylogenetic analysis of combined data. Syst Biol 53:47-67
24. Page FC (1970) Two new species of Paramoeba from Maine. J Protozool 17:421-427
25. Page FC (1983) Marine Gymnamoebae. Institute of Terrestrial Ecology, Cambridge
26. Page FC (1987) The classification of 'naked' amoebae of phylum Rhizopoda. Arch Protistenkd 133:199-217
27. Peglar MT, Amaral Zettler LA, Anderson OR, Nerad TA and 6 others (2003) Two new small-subunit ribosomal RNA gene lineages within the subclass Gymnamoebia. J Eukaryot Microbiol 59:224-232
28. Perkins FO, Castagna M (1971) Ultrastructure of the Nebenkörper or 'secondary nucleus' of the parasitic amoeba Paramoeba pemiciosa (Amoebida, Paramoebidae). J Invertebr Pathol 17:186-193
29. Posada D, Crandall KA (1998) Modeltest: testing the model of DNA substitution. Bioinformatics 14:817-818
30. Ronquist F, Huelsenbeck JP (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572-1574
31. Roubal FR, Lester RJG, Foster CK (1989) Studies on cultured and gill attached Paramoeba sp. (Gymnamoebae: Paramoebidae) and the cytopathology of paramoebic gill disease in Atlantic salmon, Salmo salar L., from Tasmania. J Fish Dis 12:481-493
32. Sawyer TK (1976) Two new crustacean hosts for the parasitic amoeba, Paramoeba perniciosa. Trans Am Microsc Soc 94:395-400
33. Smirnov A, Nassonova E, Berney C, Fahrni J, Bolivar I, Pawlowski J (2005) Molecular phylogeny and classification of the lobose amoebae. Protist 156:129-142
34. Sprague V, Beckett RL, Sawyer TK (1969) A new species of Paramoeba (Amoebida, Paramoebidae) parasitic in the crab (Callinectes sapidus). J Invertebr Pathol 14:167-174
35. Swofford DL (2001) PAUP*: phylogenetic analysis using parsimony, version 4.0b10. Sinauer Associates, Sunderland, MA
36. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876-4882