Side-chain losses in electron capture dissociation to improve peptide identification

Analytical Chemistry

Volumn 79, Issue 6, 2007, Pages 2296-2302

  Savitski, Mikhail M ^a   Nielsen, Michael L ^a   Zubarev, Roman A ^a  

^a UPPSALA UNIVERSITY   (Sweden)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; DATABASE SYSTEMS; ELECTRONS; ISOMERS; MASS SPECTROMETRY; PEPTIDES;

DATABASE MATCHING; ELECTRON CAPTURE DISSOCIATION (ECD); MASS SPECTRA; SIDE CHAIN LOSSES;

DISSOCIATION;

ASPARTIC ACID; GLUTAMINE; GLYCINE; ISOLEUCINE; LEUCINE; METHIONINE;

AMINO ACID ANALYSIS; AMINO ACID SEQUENCE; ARTICLE; DATA BASE; ELECTRON CAPTURE DETECTION; HUMAN; HUMAN CELL; MASS SPECTROMETRY; NONHUMAN; PEPTIDE ANALYSIS; PROTEOMICS;

AMINO ACID SEQUENCE; AMINO ACIDS; ELECTRONS; FREE RADICALS; MOLECULAR SEQUENCE DATA; PEPTIDES;

EID: 33947366469     PISSN: 00032700     EISSN: None     Source Type: Journal    
DOI: 10.1021/ac0619332     Document Type: Article

References (31)

1. Steen, H.; Mann, M. Nat. Rev. Mol. Cell Biol. 2004, 5, 699-711.
2. Aebersold, R.; Mann, M. Nature 2003, 422, 198-207.
3. Mann, M.; Jensen, O. N. Nat. Biotechnol. 2003, 21, 255-261.
4. Zubarev, R. A.; Kelleher, N. L.; McLafferty, F. W. J. Am. Chem. Soc. 1998, 120, 3265-3266.
5. Mirgorodskaya, E.; Roepstorff, P.; Zubarev, R. A. Anal Chem. 1999, 71, 4431-4436.
6. Zubarev, R. A.; Kruger, N. A.; Fridriksson, E. K; Lewis, M. A.; Horn, D. M.; Carpenter, B. K.; McLafferty, F. W. J. Am. Chem. Soc. 1999, 121, 2857-2862.
7. Zubarev, R. A.; Horn, D. M.; Fridriksson, E. K; Kelleher, N. L.; Kruger, N. A.; Lewis, M. A.; Carpenter, B. K.; McLafferty, F. W. Anal Chem. 2000, 72, 563-573.
8. Leymarie, N.; Costello, C. E.; O'Connor, P. B. J. Am. Chem. Soc. 2003, 125, 8949-8958.
9. Turecek, F.; Syrstad, E. A. J. Am. Chem. Soc. 2003, 125, 3353-3369.
10. O'Connor, P. B.; Lin, C.; Cournoyer, J. J.; Pittman, J. L.; Belyayev, M.; Budnik, B. A. J. Am. Soc. Mass Spectrom. 2006, 17, 576-585.
11. Savitski, M. M.; Kjeldsen, F.; Nielsen, M. L.; Zubarev, R. A. J. Am. Soc. Mass Spectrom. 2007, 18 (1), 113-120.
12. Cooper, H. J.; Hudgins, R. R.; Hakansson, K.; Marshall, A. G. J. Am. Soc. Mass Spectrom. 2002, 13, 241-249.
13. Kjeldsen, F.; Haselmann, K. F.; Budnik, B. A.; Jensen, F.; Zubarev, R. A. Chem. Phys. Lett. 2002, 356, 201-206.
14. Kjeldsen, F.; Haselmann, K. F.; Sorensen, E. S.; Zubarev, R. A. Anal. Chem. 2003, 75, 1267-1274.
15. Kjeldsen, F.; Zubarev, R. J. Am. Chem. Soc. 2003, 125, 6628-6629.
16. Cooper, H. J.; Hudgins, R. R.; Hakansson, K.; Marshall, A. G. Int. J. Mass Spectrom. 2003, 228, 723-728.
17. Fung, Y. M. E.; Chan, T. W. D. J. Am. Soc. Mass Spectrom. 2005, 16, 1523-1535.
18. Haselmann, K. F.; Budnik, B. A.; Kjeldsen, F.; Nielsen, M. L.; Olsen, J. V.; Zubarev, R. A. Eur. J. Mass Spectrom. 2002, 8, 117-121.
19. Nielsen, M. L.; Savitski, M. M.; Zubarev, R. A. Mol. Cell. Proteomics 2005, 4, 835-845.
20. Savitski, M. M.; Nielsen, M. L.; Zubarev, R. A. Mol. Cell. Proteomics 2005, 4, 1180-1188.
21. Savitski, M. M.; Nielsen, M. L.; Kjeldsen, F.; Zubarev, R. A. J. Proteome Res. 2005, 4, 2348-2354.
22. Savitski, M. M.; Nielsen, M. L.; Zubarev, R. A. Mol. Cell. Proteomics 2006, 5, 935-948.
23. Johnson, R. S.; Martin, S. A.; Biemann, K.; Stults, J. T.; Watson, J. T. Anal. Chem. 1987, 59, 2621-2625.
24. McLafferty, F. W.; Turecek, F. Interpretation of Mass Spectra; University Science Books: California, 1993.
25. Bewick, V.; Cheek, L.; Ball, J. Crit. Care 2003, 7, 451-459.
26. Zubarev, R. A. Mass Spectrom. Rev. 2003, 22, 57-77.
27. Giese, B.; Wessely, S.; Spormann, M.; Lindemann, U.; Meggers, E.; Michel-Beyerle, M. E. Angew. Chem., Int. Ed. 1999, 38, 996-998.
28. Stubbe, J.; Nocera, D. G.; Yee, C. S.; Chang, M. C. Y. Chem. Rev. 2003, 103, 2167-2201.
29. Tsybin, Y. O.; Witt, M.; Baykut, G.; Kjeldsen, F.; Hakansson, P. Rapid Commun. Mass Spectrom. 2003, 17, 1759-1768.
30. Chalkley, R. J.; Brinkworth, C. S.; Burlingame, A. L. J. Am. Soc. Mass Spectrom. 2006, 17, 1271-1274.
31. Syka, J. E. P.; Coon, J. J.; Schroeder, M. J.; Shabanowitz, J.; Hunt, D. F. Proc. Natl. Acad. Sci. U.S.A. 2004, 101, 9528-9533.