-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S. F., Madden, T. L., Schäffer, A. A., Zhang, J., Zhang, Z., Miller, W. & Lipman, D. J. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25, 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
8444239349
-
Description of Thermococcus kodakaraensis sp. nov., a well studied hypertbermophilic archaeon previously reported as Pyrococcus sp
-
Atomi, H., Fukui, T., Kanai, T., Morikawa, M. & Imanaka, T. (2004). Description of Thermococcus kodakaraensis sp. nov., a well studied hypertbermophilic archaeon previously reported as Pyrococcus sp. KODI. Archaea 1, 263-267.
-
(2004)
KODI. Archaea
, vol.1
, pp. 263-267
-
-
Atomi, H.1
Fukui, T.2
Kanai, T.3
Morikawa, M.4
Imanaka, T.5
-
3
-
-
0018419825
-
Methanogens: Reevaluation of a unique biological group
-
Balch, W. E., Fox, G. E., Magrum, L. J., Woese, C. R. & Wolfe, R. S. (1979). Methanogens: reevaluation of a unique biological group. Microbiol Rev 43, 260-296.
-
(1979)
Microbiol Rev
, vol.43
, pp. 260-296
-
-
Balch, W.E.1
Fox, G.E.2
Magrum, L.J.3
Woese, C.R.4
Wolfe, R.S.5
-
4
-
-
0028326341
-
Microbial characterization of thermophilic Archaea isolated from the Guaymas Basin hydrothermal vent
-
Canganella, F. & Jones, W. J. (1994). Microbial characterization of thermophilic Archaea isolated from the Guaymas Basin hydrothermal vent. Curr Microbiol 28, 299-306.
-
(1994)
Curr Microbiol
, vol.28
, pp. 299-306
-
-
Canganella, F.1
Jones, W.J.2
-
5
-
-
0031753314
-
Thermococcus guaymasensis sp. nov. and Thermococcus aggregans sp. nov., two novel thermophilic archaea isolated from the Guaymas Basin hydrothermal vent site
-
Canganella, F., Jones, W. J., Gambacorta, A. & Antranikian, G. (1998). Thermococcus guaymasensis sp. nov. and Thermococcus aggregans sp. nov., two novel thermophilic archaea isolated from the Guaymas Basin hydrothermal vent site. Int J Syst Bacteriol 48, 1181-1185.
-
(1998)
Int J Syst Bacteriol
, vol.48
, pp. 1181-1185
-
-
Canganella, F.1
Jones, W.J.2
Gambacorta, A.3
Antranikian, G.4
-
6
-
-
17244370591
-
Unveiling the mechanisms of cell-cell fusion
-
Chen, E. H. & Olson, E. N. (2005). Unveiling the mechanisms of cell-cell fusion. Science 308, 369-373.
-
(2005)
Science
, vol.308
, pp. 369-373
-
-
Chen, E.H.1
Olson, E.N.2
-
7
-
-
0031943504
-
Isolation and characterization of Thermococcus barossii, sp. nov., a hyperthermophilic archaeon isolated from a hydrothermal vent flange formation
-
Duffaud, G. D., d'Hennezel, O. B., Peek, A. S., Reysenbach, A.-L. & Kelly, R. M. (1998). Isolation and characterization of Thermococcus barossii, sp. nov., a hyperthermophilic archaeon isolated from a hydrothermal vent flange formation. Syst Appl Microbiol 21, 40-49.
-
(1998)
Syst Appl Microbiol
, vol.21
, pp. 40-49
-
-
Duffaud, G.D.1
d'Hennezel, O.B.2
Peek, A.S.3
Reysenbach, A.-L.4
Kelly, R.M.5
-
8
-
-
0024358339
-
Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in micro-dilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains
-
Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in micro-dilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
-
(1989)
Int J Syst Bacteriol
, vol.39
, pp. 224-229
-
-
Ezaki, T.1
Hashimoto, Y.2
Yabuuchi, E.3
-
9
-
-
0029817510
-
Thermococcus fumicolans sp. nov., a new hyperthermophilic archaeon isolated from a deep-sea bydrothermal vent in the North Fiji Basin
-
Godfroy, A., Meunier, J.-R., Guezennec, J., Lesongeur, F., Raguénès, G., Rimbault, A. & Barbier, G. (1996). Thermococcus fumicolans sp. nov., a new hyperthermophilic archaeon isolated from a deep-sea bydrothermal vent in the North Fiji Basin. Int J Syst Bacteriol 46, 1113-1119.
-
(1996)
Int J Syst Bacteriol
, vol.46
, pp. 1113-1119
-
-
Godfroy, A.1
Meunier, J.-R.2
Guezennec, J.3
Lesongeur, F.4
Raguénès, G.5
Rimbault, A.6
Barbier, G.7
-
10
-
-
0030743924
-
Thermococcus hydrothermalis sp. nov., a new hyperthermophilic archaeon isolated from a deep-sea bydrothermal vent
-
Godfroy, A., Lesongeur, F., Raguénès, G., Quérellou, J., Antoine, E., Meunier, J.-R., Guezennec, J. & Barbier, G. (1997). Thermococcus hydrothermalis sp. nov., a new hyperthermophilic archaeon isolated from a deep-sea bydrothermal vent. Int J Syst Bacteriol 47, 622-626.
-
(1997)
Int J Syst Bacteriol
, vol.47
, pp. 622-626
-
-
Godfroy, A.1
Lesongeur, F.2
Raguénès, G.3
Quérellou, J.4
Antoine, E.5
Meunier, J.-R.6
Guezennec, J.7
Barbier, G.8
-
11
-
-
0029134968
-
Thermococcus peptonophilus sp. nov., a fast-growing, extremely thermophilic archaebacterium isolated from deep-sea hydrothermal vents
-
González, J. M., Kato, C. & Horikoshi, K. (1995). Thermococcus peptonophilus sp. nov., a fast-growing, extremely thermophilic archaebacterium isolated from deep-sea hydrothermal vents. Arch Microbiol 164, 159-164.
-
(1995)
Arch Microbiol
, vol.164
, pp. 159-164
-
-
González, J.M.1
Kato, C.2
Horikoshi, K.3
-
12
-
-
0032434673
-
Evaluation of a microplate DNA-DNA hybridization method compared with the initial renaturation method
-
Goris, J., Suzuki, K., De Vos, P., Nakase, T. & Kersters, K. (1998). Evaluation of a microplate DNA-DNA hybridization method compared with the initial renaturation method. Can J Microbiol 44, 1148-1153.
-
(1998)
Can J Microbiol
, vol.44
, pp. 1148-1153
-
-
Goris, J.1
Suzuki, K.2
De Vos, P.3
Nakase, T.4
Kersters, K.5
-
13
-
-
0032982922
-
Thermococcus siculi sp. nov., a novel hyperthermophilic archaeon isolated from a deep-sea hydrothermal vent at the Mid-Okinawa Trough
-
Grote, R., Li, L., Tamaoka, J., Kato, C., Horikoshi, K. & Antranikian, G. (1999). Thermococcus siculi sp. nov., a novel hyperthermophilic archaeon isolated from a deep-sea hydrothermal vent at the Mid-Okinawa Trough. Extremophiles 3, 55-62.
-
(1999)
Extremophiles
, vol.3
, pp. 55-62
-
-
Grote, R.1
Li, L.2
Tamaoka, J.3
Kato, C.4
Horikoshi, K.5
Antranikian, G.6
-
14
-
-
0029923838
-
The origin of the eukaryotic cell
-
Gupta, R. S. & Golding, G. B. (1996). The origin of the eukaryotic cell. Trends Biochem Sci 21, 166-171.
-
(1996)
Trends Biochem Sci
, vol.21
, pp. 166-171
-
-
Gupta, R.S.1
Golding, G.B.2
-
15
-
-
0036265711
-
Ultrastructure and taxonomy of a marine photosynthetic stramenopile Phaeomonas parva gen. et sp. nov. (Pinguiophyceae) with emphasis on the flagellar apparatus architecture
-
Honda, D. & Inouye, I. (2002). Ultrastructure and taxonomy of a marine photosynthetic stramenopile Phaeomonas parva gen. et sp. nov. (Pinguiophyceae) with emphasis on the flagellar apparatus architecture. Phycol Res 50, 75-89.
-
(2002)
Phycol Res
, vol.50
, pp. 75-89
-
-
Honda, D.1
Inouye, I.2
-
16
-
-
16444372420
-
The origin of eukaryotes is suggested as the symbiosis of Pyrococcus into γ-Proteobacteria by phylogenetic tree based on gene content
-
Horiike, T., Hamada, K., Miyata, D. & Shinozawa, T. (2004). The origin of eukaryotes is suggested as the symbiosis of Pyrococcus into γ-Proteobacteria by phylogenetic tree based on gene content. J Mol Evol 59, 606-619.
-
(2004)
J Mol Evol
, vol.59
, pp. 606-619
-
-
Horiike, T.1
Hamada, K.2
Miyata, D.3
Shinozawa, T.4
-
17
-
-
33645214579
-
Recombination between elongation factor 1α genes from distantly related archaeal lineages
-
Inagaki, Y., Susko, E. & Roger, A. J. (2006). Recombination between elongation factor 1α genes from distantly related archaeal lineages. Proc Natl Acad Sci USA 103, 4528-4533.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 4528-4533
-
-
Inagaki, Y.1
Susko, E.2
Roger, A.J.3
-
18
-
-
0037640006
-
Thermococcus gammatolerans sp. nov., a hyperthermophilic archaeon from a deep-sea hydrothermal vent that resists ionizing radiation
-
Jolivet, E., L'Haridon, S., Corre, E., Forterre, P. & Prieur, D. (2003). Thermococcus gammatolerans sp. nov., a hyperthermophilic archaeon from a deep-sea hydrothermal vent that resists ionizing radiation. Int J Syst Evol Microbiol 53, 847-851.
-
(2003)
Int J Syst Evol Microbiol
, vol.53
, pp. 847-851
-
-
Jolivet, E.1
L'Haridon, S.2
Corre, E.3
Forterre, P.4
Prieur, D.5
-
19
-
-
84954931371
-
Estimation of DNA base composition by high performance liquid chromatography of its nuclease P1 hydrolysate
-
Katayama-Fujimura, Y., Komatsu, Y., Kuraishi, H. & Kaneko, T. (1984). Estimation of DNA base composition by high performance liquid chromatography of its nuclease P1 hydrolysate. Agric Biol Chem 48, 3169-3172.
-
(1984)
Agric Biol Chem
, vol.48
, pp. 3169-3172
-
-
Katayama-Fujimura, Y.1
Komatsu, Y.2
Kuraishi, H.3
Kaneko, T.4
-
20
-
-
0028017461
-
Thermococcus profundus sp. nov., a new hyperthermophilic archaeon isolated from a deep-sea hydrothermal vent
-
Kobayashi, T., Kwak, Y. S., Akiba, T., Kudo, T. & Horikoshi, K. (1994). Thermococcus profundus sp. nov., a new hyperthermophilic archaeon isolated from a deep-sea hydrothermal vent. Syst Appl Microbiol 17, 232-236.
-
(1994)
Syst Appl Microbiol
, vol.17
, pp. 232-236
-
-
Kobayashi, T.1
Kwak, Y.S.2
Akiba, T.3
Kudo, T.4
Horikoshi, K.5
-
21
-
-
27844440882
-
Thermococcus coalescens sp. nov., a cell-fusing hyperthermophilic archaeon from Suiyo Seamount
-
& other authors
-
Kuwabara, T., Minaba, M., Iwayama, Y., Inouye, I., Nakashima, M., Marumo, K., Maruyama, A., Sugai, A., Itoh, T. & other authors (2005). Thermococcus coalescens sp. nov., a cell-fusing hyperthermophilic archaeon from Suiyo Seamount. Int J Syst Evol Microbiol 55, 2507-2514.
-
(2005)
Int J Syst Evol Microbiol
, vol.55
, pp. 2507-2514
-
-
Kuwabara, T.1
Minaba, M.2
Iwayama, Y.3
Inouye, I.4
Nakashima, M.5
Marumo, K.6
Maruyama, A.7
Sugai, A.8
Itoh, T.9
-
22
-
-
33645455059
-
Fulfilling Darwin's Dream
-
In Edited by J. Sapp. New York: Oxford University Press
-
Lake, J. A., Moore, J. E., Simonson, A. B. & Rivera, M. C. (2005). Fulfilling Darwin's Dream. In Microbial Phylogeny and Evolution: Concepts and Controversies, pp. 184-206. Edited by J. Sapp. New York: Oxford University Press.
-
(2005)
Microbial Phylogeny and Evolution: Concepts and Controversies
, pp. 184-206
-
-
Lake, J.A.1
Moore, J.E.2
Simonson, A.B.3
Rivera, M.C.4
-
23
-
-
0030035039
-
Archaeal-eubacterial mergers in the origin of Eukarya: Phylogenetic classification of life
-
Margulis, L. (1996). Archaeal-eubacterial mergers in the origin of Eukarya: phylogenetic classification of life. Proc Natl Acad Sci U S A 93, 1071-1076.
-
(1996)
Proc Natl Acad Sci U S A
, vol.93
, pp. 1071-1076
-
-
Margulis, L.1
-
24
-
-
73649209034
-
Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature
-
Marmur, J. & Doty, P. (1962). Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol 5, 109-118.
-
(1962)
J Mol Biol
, vol.5
, pp. 109-118
-
-
Marmur, J.1
Doty, P.2
-
25
-
-
2642689666
-
The hydrogen hypothesis for the first eukaryote
-
Martin, W. & Müller, M. (1998). The hydrogen hypothesis for the first eukaryote. Nature 392, 37-41.
-
(1998)
Nature
, vol.392
, pp. 37-41
-
-
Martin, W.1
Müller, M.2
-
26
-
-
0024787925
-
Thermococcus stetteri sp. nov., a new extremely thermophilic marine sulfur-metabolizing archaebacterium
-
Miroshnichenko, M. L., Bonch-Osmolovskaya, E. A., Neuner, A., Kostrikina, N. A., Chernych, N. A. & Alekseev, V. A. (1989). Thermococcus stetteri sp. nov., a new extremely thermophilic marine sulfur-metabolizing archaebacterium. Syst Appl Microbiol 12, 257-262.
-
(1989)
Syst Appl Microbiol
, vol.12
, pp. 257-262
-
-
Miroshnichenko, M.L.1
Bonch-Osmolovskaya, E.A.2
Neuner, A.3
Kostrikina, N.A.4
Chernych, N.A.5
Alekseev, V.A.6
-
27
-
-
0031941280
-
Thermococcus gorgonarius sp. nov. and Thermococcus pacificus sp. nov.: Heterotrophic extremely thermophilic archaea from New Zealand submarine hot vents
-
Miroshnichenko, M. L., Gongadze, G. M., Rainey, F. A., Kostyukova, A. S., Lysenko, A. M., Chernyh, N. A. & Bonch-Osmolovskaya, E. A. (1998). Thermococcus gorgonarius sp. nov. and Thermococcus pacificus sp. nov.: heterotrophic extremely thermophilic archaea from New Zealand submarine hot vents. Int J Syst Bacteriol 48, 23-29.
-
(1998)
Int J Syst Bacteriol
, vol.48
, pp. 23-29
-
-
Miroshnichenko, M.L.1
Gongadze, G.M.2
Rainey, F.A.3
Kostyukova, A.S.4
Lysenko, A.M.5
Chernyh, N.A.6
Bonch-Osmolovskaya, E.A.7
-
28
-
-
0031735879
-
Symbiosis between methanogenic Archaea and δ-Proteobacteria as the origin of Eukaryotes: The syntrophic hypothesis
-
Moreira, D. & López-García, P. (1998). Symbiosis between methanogenic Archaea and δ-Proteobacteria as the origin of Eukaryotes: the syntrophic hypothesis. J Mol Evol 47, 517-530.
-
(1998)
J Mol Evol
, vol.47
, pp. 517-530
-
-
Moreira, D.1
López-García, P.2
-
29
-
-
0033609333
-
Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima
-
& other authors
-
Nelson, K. E., Clayton, R. A., Gill, S. R., Gwinn, M. L., Dodson, R. J., Haft, D. H., Hickey, E. K., Peterson, J. D., Nelson, W. C. & other authors (1999). Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima. Nature 399, 323-329.
-
(1999)
Nature
, vol.399
, pp. 323-329
-
-
Nelson, K.E.1
Clayton, R.A.2
Gill, S.R.3
Gwinn, M.L.4
Dodson, R.J.5
Haft, D.H.6
Hickey, E.K.7
Peterson, J.D.8
Nelson, W.C.9
-
30
-
-
0023375195
-
The neighbor-joining method: A new method for reconstrucing phylogenetic trees
-
Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstrucing phylogenetic trees. Mol Biol Evol 4, 406-425.
-
(1987)
Mol Biol Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
31
-
-
2042522177
-
Core lipids of hyperthermophilic archaeon, Pyrococcus horikoshii OT3
-
Sugai, A., Masuchi, Y., Uda, I., Itoh, T. & Itoh, Y. H. (2000). Core lipids of hyperthermophilic archaeon, Pyrococcus horikoshii OT3. J Jpn Oil Chem Soc 49, 695-700.
-
(2000)
J Jpn Oil Chem Soc
, vol.49
, pp. 695-700
-
-
Sugai, A.1
Masuchi, Y.2
Uda, I.3
Itoh, T.4
Itoh, Y.H.5
-
32
-
-
27844583092
-
The core lipid composition of the 17 strains of hyperthermophilic Archaea, Thermococcales
-
Sugai, A., Uda, I., Itoh, Y. H. & Itoh, T. (2004). The core lipid composition of the 17 strains of hyperthermophilic Archaea, Thermococcales. J Oleo Sci 53, 41-44.
-
(2004)
J Oleo Sci
, vol.53
, pp. 41-44
-
-
Sugai, A.1
Uda, I.2
Itoh, Y.H.3
Itoh, T.4
-
33
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
34
-
-
0037223123
-
From pre-cells to Eukarya - A tale of two lipids
-
Wächtershäuser, G. (2003). From pre-cells to Eukarya - a tale of two lipids. Mol Microbiol 47, 13-22.
-
(2003)
Mol Microbiol
, vol.47
, pp. 13-22
-
-
Wächtershäuser, G.1
-
35
-
-
0000770675
-
Report of the ad hoc committee on reconstitution of approaches to bacterial systematics
-
& other authors International Committee on Systematic Bacteriology
-
Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconstitution of approaches to bacteria] systematics. Int J Syst Bacteriol 37, 463-464.
-
(1987)
Int J Syst Bacteriol
, vol.37
, pp. 463-464
-
-
Wayne, L.G.1
Brenner, D.J.2
Colwell, R.R.3
Grimont, P.A.D.4
Kandler, O.5
Krichevsky, M.I.6
Moore, L.H.7
Moore, W.E.C.8
Murray, R.G.E.9
-
36
-
-
0032499698
-
The universal ancestor
-
Woese, C. (1998). The universal ancestor. Proc Natl Acad Sci U S A 95, 6854-6859.
-
(1998)
Proc Natl Acad Sci U S A
, vol.95
, pp. 6854-6859
-
-
Woese, C.1
-
37
-
-
0020623423
-
The archaebacterium Thermococcus celer represents a novel genus within the thermophilic branch of the archaebacteria
-
Zillig, W., Holz, I., Janekovic, D., Schäfer, W. & Reiter, W. D. (1983). The archaebacterium Thermococcus celer represents a novel genus within the thermophilic branch of the archaebacteria. Syst Appl Microbiol 4, 88-94.
-
(1983)
Syst Appl Microbiol
, vol.4
, pp. 88-94
-
-
Zillig, W.1
Holz, I.2
Janekovic, D.3
Schäfer, W.4
Reiter, W.D.5
|