Molecular analysis of magnetotactic bacteria and development of functional bacterial magnetic particles for nano-biotechnology

Trends in Biotechnology

Volumn 25, Issue 4, 2007, Pages 182-188

  Matsunaga, Tadashi ^a   Suzuki, Takeyuki ^a   Tanaka, Masayoshi ^a   Arakaki, Atsushi ^a  

^a TOKYO UNIVERSITY OF AGRICULTURE AND TECHNOLOGY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

BIOMINERALIZATION; GENES; GENETIC ENGINEERING; MAGNETIC MATERIALS; MOLECULAR DYNAMICS; NANOBIOTECHNOLOGY; SELF ASSEMBLY;

BACTERIAL MAGNETITE FORMATION; BACTERIAL SPECIES; SURFACE-PROTEIN;

BACTERIA;

MAGNETITE; MEMBRANE PROTEIN; NANOMATERIAL; PROTEOME; TRANSCRIPTOME;

BIOMINERALIZATION; CRYSTAL; GENE IDENTIFICATION; GENETIC ENGINEERING; MUTAGENESIS; NANOBIOTECHNOLOGY; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; REVIEW;

BACTERIAL PROTEINS; BIOTECHNOLOGY; FERROSOFERRIC OXIDE; MAGNETICS; MAGNETOSPIRILLUM; NANOTECHNOLOGY;

BACTERIA (MICROORGANISMS);

EID: 33947171884     PISSN: 01677799     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.tibtech.2007.02.002     Document Type: Review

References (55)

1. Perez J.M., et al. Magnetic relaxation switches capable of sensing molecular interactions. Nat. Biotechnol. 20 (2002) 816-820
2. Kramer R.M., et al. Engineered protein cages for nanomaterial synthesis. J. Am. Chem. Soc. 126 (2004) 13282-13286
3. Gonzales M., and Krishnan K.M. Synthesis of magnetoliposomes with monodisperse iron oxide nanocrystal cores for hyperthermia. J. Magn. Magn. Mater. 293 (2005) 265-270
4. Bazylinski D.A., et al. Electron microscopic studies of magnetosomes in magnetotactic bacteria. Microsc. Res. Tech. 27 (1994) 389-401
5. Suzuki H., et al. High-resolution magnetic force microscope images of a magnetic particle chain extracted from magnetic bacteria AMB-1. Jpn. J. Appl. Phys. 37 (1998) L1343-L1345
6. Sakaguchi T., et al. Magnetite formation by a sulphate-reducing bacterium. Nature 365 (1993) 47-49
7. Matsunaga T., et al. Biotechnological application of nano-scale engineered bacterial magnetic particles. J. Mater. Chem. 14 (2004) 2099-2105
8. Bazylinski D.A., and Frankel R.B. Magnetosome formation in prokaryotes. Nat. Rev. Microbiol. 2 (2004) 217-230
9. Matsunaga T., and Okamura Y. Genes and proteins involved in bacterial magnetic particle formation. Trends Microbiol. 11 (2003) 536-541
10. Tanaka T., and Matsunaga T. Fully automated chemiluminescence immunoassay of insulin using antibody-protein A-bacterial magnetic particle complexes. Anal. Chem. 72 (2000) 3518-3522
11. Tanaka T., et al. Rapid and sensitive detection of 17B-estradiol in environmental water using automated immunoassay system with bacterial magnetic particles. J. Biotechnol. 108 (2004) 153-159
12. Tanaka T., et al. Development and evaluation of an automated workstation for single nucleotide polymorphism discrimination using bacterial magnetic particles. Biosens. Bioelectron. 19 (2003) 325-330
13. Maruyama K., et al. Single nucleotide polymorphism detection in aldehyde dehydrogenase 2 (ALDH2) gene using bacterial magnetic particles based on dissociation curve analysis. Biotechnol. Bioeng. 87 (2004) 687-694
14. Yoza B., et al. Fully automated DNA extraction from blood using magnetic particles modified with hyperbranched polyamidoamine dendrimer. J. Biosci. Bioeng. 95 (2003) 21-26
15. Hergt R., et al. Magnetic properties of bacterial magnetosomes as potential diagnostic and therapeutic tools. J. Magn. Magn. Mater. 293 (2005) 80-86
16. Matsunaga T., et al. Complete genome sequence of the facultative anaerobic magnetotactic bacterium Magnetospirillum sp. strain AMB-1. DNA Res. 12 (2005) 157-166
17. Schübbe S., et al. Characterization of a spontaneous nonmagnetic mutant of Magnetospirillum gryphiswaldense reveals a large deletion comprising a putative magnetosome island. J. Bacteriol. 185 (2003) 5779-5790
18. Ullrich S., et al. A hypervariable 130 kilobase genomic region of Magnetospirillum gryphiswaldense comprises a magnetosome island, which undergoes frequent rearrangements during stationary growth. J. Bacteriol. 187 (2005) 7176-7184
19. Fukuda Y., et al. Dynamic analysis of a genomic island in Magnetospirillum sp. strain AMB-1 reveals how magnetosome synthesis developed. FEBS Lett. 580 (2006) 801-812
20. Suzuki T., et al. Global gene expression analysis of iron-inducible genes in Magnetospirillum magneticum AMB-1. J. Bacteriol. 188 (2006) 2275-2279
21. Calugay R.J., et al. Siderophore production by the magnetic bacterium Magnetospirillum magneticum AMB-1. FEMS Microbiol. Lett. 218 (2003) 371-375
22. Calugay R.J., et al. Siderophore production of a periplasmic-transport binding-protein kinase gene defective mutant of Magnetospirillum magneticum AMB-1. Biochem. Biophys. Res. Commun. 323 (2004) 852-857
23. Yang C., et al. Effects of growth medium composition, iron sources and atmospheric oxygen concentrations on production of luciferase-bacterial magnetic particle complex by a recombinant Magnetospirillum magneticum AMB-1. Enzyme Microb. Technol. 29 (2001) 13-19
24. Kroger N., et al. Self-assembly of highly phosphorylated silaffins and their function in biosilica morphogenesis. Science 298 (2002) 584-586
25. Lakshminarayanan R., et al. Investigation of the role of ansocalcin in the biomineralization in goose eggshell matrix. Proc. Natl. Acad. Sci. U. S. A. 99 (2002) 5155-5159
26. Okamura Y., et al. Two-dimensional analysis of proteins specific to the bacterial magnetic particle membrane from Magnetospirillum sp. AMB-1. Appl. Biochem. Biotechnol. (2000) 84-86 1-446
27. Matsunaga T., et al. Cloning and characterization of a gene, mpsA, encoding a protein associated with intracellular magnetic particles from Magnetospirillum sp. strain AMB-1. Biochem. Biophys. Res. Commun. 268 (2000) 932-937
28. Arakaki A., et al. A novel protein tightly bound to bacterial magnetic particles in Magnetospirillum magneticum strain AMB-1. J. Biol. Chem. 278 (2003) 8745-8750
29. Tanaka M., et al. Origin of magnetosome membrane: proteomic analysis of magnetosome membrane and comparison with cytoplasmic membrane. PROTEOMICS 6 (2006) 5234-5247
30. Grünberg K., et al. A large gene cluster encoding several magnetosome proteins is conserved in different species of magnetotactic bacteria. Appl. Environ. Microbiol. 67 (2001) 4573-4582
31. Grünberg K., et al. Biochemical and proteomic analysis of the magnetosome membrane in Magnetospirillum gryphiswaldense. Appl. Environ. Microbiol. 70 (2004) 1040-1050
32. Okuda Y., et al. Cloning and sequencing of a gene encoding a new member of the tetratricopeptide protein family from magnetosomes of Magnetospirillum magnetotacticum. Gene 171 (1996) 99-102
33. Komeili A., et al. Magnetosomes are cell membrane invaginations organized by the actin-like protein MamK. Science 311 (2006) 242-245
34. Komeili A., et al. Magnetosome vesicles are present before magnetite formation, and MamA is required for their activation. Proc. Natl. Acad. Sci. U. S. A. 101 (2004) 3839-3844
35. Okamura Y., et al. A magnetosome-specific GTPase from the magnetic bacterium Magnetospirillum magneticum AMB-1. J. Biol. Chem. 276 (2001) 48183-48188
36. Schultheiss D., et al. The presumptive magnetosome protein Mms16 is a poly(3-hydroxybutyrate) granule-bound protein (phasin) in Magnetospirillum gryphiswaldense. J. Bacteriol. 187 (2005) 2416-2425
37. Nakamura C., et al. An iron-regulated gene, magA, encoding an iron transport protein of Magnetospirillum sp. strain AMB-1. J. Biol. Chem. 270 (1995) 28392-28396
38. Scheffel A., et al. An acidic protein aligns magnetosomes along a filamentous structure in magnetotactic bacteria. Nature 440 (2006) 110-114
39. Lee Y., et al. ProteoChip: a highly sensitive protein microarray prepared by a novel method of protein immobilization for application of protein-protein interaction studies. Proteomics 3 (2003) 2289-2304
40. Shumaker-Parry J.S., et al. Microspotting streptavidin and double-stranded DNA arrays on gold for high-throughput studies of protein-DNA interactions by surface plasmon resonance microscopy. Anal. Chem. 76 (2004) 918-929
41. Nakamura C., et al. Iron-regulated expression and membrane localization of the MagA protein in Magnetospirillum sp. strain AMB-1. J. Biochem. (Tokyo) 118 (1995) 23-27
42. Sato R., et al. Development of high-performance and rapid immunoassay for model food allergen lysozyme using antibody-conjugated bacterial magnetic particles and fully automated system. Appl. Biochem. Biotechnol. (2001) 91-93 9-116
43. Yoshino T., et al. Development of a novel method for screening of estrogenic compounds using nano-sized bacterial magnetic particles displaying estrogen receptor. Anal. Chim. Acta 532 (2005) 105-111
44. Yoshino T., and Matsunaga T. Efficient and stable display of functional proteins on bacterial magnetic particles using Mms13 as a novel anchor molecule. Appl. Environ. Microbiol. 72 (2006) 465-471
45. Yoshino T., et al. Assembly of G-protein-coupled receptors onto nanosized bacterial magnetic particles using Mms16 as an anchor molecule. Appl. Environ. Microbiol. 70 (2004) 2880-2885
46. Matsunaga T., et al. Production of luciferase-magnetic particle complex by recombinant Magnetospirillum sp. AMB-1. Biotechnol. Bioeng. 70 (2000) 704-709
47. Yoshino T., and Matsunaga T. Development of efficient expression system for protein display on bacterial magnetic particles. Biochem. Biophys. Res. Commun. 338 (2005) 1678-1681
48. Matsunaga T., et al. Preparation of luciferase-bacterial magnetic particle complex by artificial integration of MagA-luciferase fusion protein into the bacterial magnetic particle membrane. Biotechnol. Bioeng. 77 (2002) 614-618
49. Tanaka T., et al. Spontaneous integration of transmembrane peptides into a bacterial magnetic particle membrane and its application to display of useful proteins. Anal. Chem. 76 (2004) 3764-3769
50. Parra E., et al. The role of B7-1 and LFA-3 in costimulation of CD8+ T cells. J. Immunol. 158 (1997) 637-642
51. Kuhara M., et al. Magnetic cell separation using antibody binding with protein A expressed on bacterial magnetic particles. Anal. Chem. 76 (2004) 6207-6213
52. Matsunaga T., et al. Magnetic separation of CD14+ cells using antibody binding with protein A expressed on bacterial magnetic particles for generating dendritic cells. Biochem. Biophys. Res. Commun. 350 (2006) 1019-1025
53. Tiwari A., et al. Magnetic beads (Dynabead) toxicity to endothelial cells at high bead concentration: implication for tissue engineering of vascular prosthesis. Cell Biol. Toxicol. 19 (2003) 265-272
54. Choi M.G., et al. Effects of titanium particle size on osteoblast functions in vitro and in vivo. Proc. Natl. Acad. Sci. U. S. A. 102 (2005) 4578-4583
55. Tsuruta T., Doyma M., and Seno Y. In: Imanjshi Y. (Ed). New Functionality Materials Vol. B. Synthesis and Function Control of Biofunctionality Materials (1993), North-Holland 55-60