Bifractality of human DNA strand-asymmetry profiles results from transcription

Physical Review E - Statistical, Nonlinear, and Soft Matter Physics

Volumn 75, Issue 3, 2007, Pages

  Nicolay, S ^a,c   Brodie Of Brodie, E B ^a   Touchon, M ^b   Audit, B ^a   D'Aubenton Carafa, Y ^b   Thermes, C ^b   Arneodo, A ^a  

^a Laboratoire Joliot Curie   (France)

^b CENTRE DE GÉNÉTIQUE MOLÉCULAIRE   (France)

^c UNIVERSITY OF LIÈGE   (Belgium)

Author keywords

[No Author keywords available]

Indexed keywords

FRACTALS; GENE ENCODING; GENE EXPRESSION; TRANSCRIPTION FACTORS; WAVELET TRANSFORMS;

BIFRACTALITY; GENE TRANSCRIPTION; HOMOGENEOUS FLUCTUATIONS; MULTIFRACTAL PROPERTIES;

DNA SEQUENCES;

EID: 33947147656     PISSN: 15393755     EISSN: 15502376     Source Type: Journal    
DOI: 10.1103/PhysRevE.75.032902     Document Type: Article

References (31)

1. H. E. Stanley, Fractals FRACEG 0218-348X 10.1142/S0218348X93000319 1, 283 (1993);
2. S. V. Buldyrev, Phys. Rev. E PLEEE8 1063-651X 10.1103/PhysRevE.51.5084 51, 5084 (1995);
3. W. Li, Comput. Chem. (Oxford) COCHDK 0097-8485 10.1016/S0097-8485(97) 00022-3 21, 257 (1997).
4. A. Arneodo, in The Science of Disasters: Climate Disruptions, Heart Attacks, and Market Crashes, edited by, A. Bunde, J. Kropp, and, H. Schellnhuber, (Springer-Verlag, Berlin, 2002), p. 26.
5. A. Arneodo, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.74.3293 74, 3293 (1995);
6. A. Arneodo, Physica D PDNPDT 0167-2789 10.1016/0167-2789(96)00029-2 96, 291 (1996).
7. B. Audit, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.86.2471 86, 2471 (2001);
8. B. Audit, J. Mol. Biol. JMOBAK 0022-2836 10.1006/jmbi.2001.5363 316, 903 (2002).
9. C. Vaillant, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.95. 068101 95, 068101 (2005);
10. C. Vaillant, Eur. Phys. J. E EPJSFH 1292-8941 19, 263 (2006).
11. E. Chargaff, Fed. Proc. FEPRA7 0014-9446 10, 654 (1951);
12. R. Rudner, Proc. Natl. Acad. Sci. U.S.A. PNASA6 0027-8424 60, 921 (1968).
13. J. W. Fickett, Genomics GNMCEP 0888-7543 10.1016/0888-7543(92)90019-O 13, 1056 (1992);
14. J. R. Lobry, J. Mol. Evol. JMEVAU 0022-2844 10.1007/BF00163237 40, 326 (1995).
15. J. M. Freeman, Science SCIEAS 0036-8075 279, 1827 (1998);
16. A. Beletskii, J. Mol. Biol. JMOBAK 0022-2836 300, 1057 (2000);
17. M. P. Francino and H. Ochman, J. Mol. Evol. JMEVAU 0022-2844 18, 1147 (2001).
18. J. Mrázek and S. Karlin, Proc. Natl. Acad. Sci. U.S.A. PNASA6 0027-8424 10.1073/pnas.95.7.3720 95, 3720 (1998);
19. A. C. Frank and J. R. Lobry, Gene GENED6 0378-1119 10.1016/S0378-1119(99) 00297-8 238, 65 (1999);
20. E. P. Rocha, Mol. Microbiol. MOMIEE 0950-382X 10.1046/j.1365-2958.1999. 01334.x 32, 11 (1999);
21. E. R. M. Tillier and R. A. Collins, J. Mol. Evol. JMEVAU 0022-2844 50, 249 (2000).
22. P. Green, Nat. Genet. NGENEC 1061-4036 10.1038/ng1103 33, 514 (2003).
23. M. Touchon, FEBS Lett. FEBLAL 0014-5793 10.1016/S0014-5793(03)01306-1 555, 579 (2003);
24. M. Touchon, Nucleic Acids Res. NARHAD 0305-1048 10.1093/nar/gkh823 32, 4969 (2004).
25. M. Touchon, Proc. Natl. Acad. Sci. U.S.A. PNASA6 0027-8424 102, 9836 (2005);
26. E.-B. Brodie of Brodie, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.94.248103 94, 248103 (2005).
27. U. Frisch, Turbulence (Cambridge University Press, Cambridge, 1995); see Sec..
28. J.-F. Muzy, Int. J. Bifurcation Chaos Appl. Sci. Eng. IJBEE4 0218-1274 10.1142/S0218127494000204 4, 245 (1994);
29. A. Arneodo, Physica A PHYADX 0378-4371 10.1016/0378-4371(94)00163-N 213, 232 (1995).
30. T. Bohr and T. Tel, in Direction in Chaos, edited by, B. L. Hao, (World Scientific, Singapore, 1988), Vol. 2, p. 194.
31. T. I. Lee, Cell CELLB5 0092-8674 125, 301 (2006).