Correcting base-assignment errors in repeat regions of shotgun assembly

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Volumn 4, Issue 1, 2007, Pages 54-64

  Zhi, Degui ^a   Keich, Uri ^b   Pevzner, Pavel ^c   Heber, Steffen ^d   Tang, Haixu ^e  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b Department of Computer Science and School of Operations Research and Information Engineering   (United States)

^c UNIVERSITY OF CALIFORNIA   (United States)

^d North Carolina State University   (United States)

^e INDIANA UNIVERSITY   (United States)

Author keywords

Expectation maximization; Finishing; Fragment assembly

Indexed keywords

CORRECT BASE-ASSIGNMENT; EXPECTATION MAXIMIZATION; FRAGMENT ASSEMBLY; GENOME SEQUENCING;

ALGORITHMS; DATABASE SYSTEMS; GENES; ITERATIVE METHODS; PROBLEM SOLVING;

ERROR ANALYSIS;

WOLBACHIA;

ALGORITHM; ARTICLE; BACTERIAL GENOME; BIOLOGY; CAMPYLOBACTER JEJUNI; CLUSTER ANALYSIS; COMPUTER PROGRAM; DNA SEQUENCE; GENETICS; LACTOCOCCUS LACTIS; METHODOLOGY; NUCLEOTIDE REPEAT; SEQUENCE ALIGNMENT; STAPHYLOCOCCUS EPIDERMIDIS; STATISTICAL MODEL; STATISTICS; WOLBACHIA;

ALGORITHMS; CAMPYLOBACTER JEJUNI; CLUSTER ANALYSIS; COMPUTATIONAL BIOLOGY; GENOME, BACTERIAL; LACTOCOCCUS LACTIS; MODELS, STATISTICAL; REPETITIVE SEQUENCES, NUCLEIC ACID; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SOFTWARE; STAPHYLOCOCCUS EPIDERMIDIS; WOLBACHIA;

EID: 33847761816     PISSN: 15455963     EISSN: None     Source Type: Journal    
DOI: 10.1109/TCBB.2007.1005     Document Type: Conference Paper

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