-
1
-
-
33750299522
-
Common Intervals and Symmetric Difference in a Model-Free Phylogenomics, with an Application to Streptophyte Evolution
-
Z. Adam, M. Turmel, C. Lemieux, and D. Sankoff, "Common Intervals and Symmetric Difference in a Model-Free Phylogenomics, with an Application to Streptophyte Evolution," Proc. Int'l Workshop Comparative Genomics (RCG '06), pp. 63-74, 2006.
-
(2006)
Proc. Int'l Workshop Comparative Genomics (RCG '06)
, pp. 63-74
-
-
Adam, Z.1
Turmel, M.2
Lemieux, C.3
Sankoff, D.4
-
2
-
-
0034767147
-
A Linear-Time Algorithm for Computing Inversion Distance between Signed Permutations with an Experimental Study
-
D.A. Bader, B.ME. Moret, and M. Yan, "A Linear-Time Algorithm for Computing Inversion Distance between Signed Permutations with an Experimental Study," J. Computational Biology, vol. 8, no. 5, pp. 483-491, 2001.
-
(2001)
J. Computational Biology
, vol.8
, Issue.5
, pp. 483-491
-
-
Bader, D.A.1
Moret, B.M.2
Yan, M.3
-
3
-
-
19544374490
-
Genome Rearrangement Distances and Gene Order Phylogeny in γ-Proteobacteria
-
E. Belda, A. Moya, and F.J. Silva, "Genome Rearrangement Distances and Gene Order Phylogeny in γ-Proteobacteria," Molecular Biology Evolution, vol. 22, no. 6, pp. 1456-1467, 2005.
-
(2005)
Molecular Biology Evolution
, vol.22
, Issue.6
, pp. 1456-1467
-
-
Belda, E.1
Moya, A.2
Silva, F.J.3
-
4
-
-
33646150089
-
Conserved Structures in Evolution Scenarios
-
S. Bérard, A. Bergeron, and C. Chauve, "Conserved Structures in Evolution Scenarios," Proc. Int'l Workshop Comparative Genomics (RECOMB '04), pp. 1-15, 2005.
-
(2005)
Proc. Int'l Workshop Comparative Genomics (RECOMB '04)
, pp. 1-15
-
-
Bérard, S.1
Bergeron, A.2
Chauve, C.3
-
5
-
-
35048875232
-
Reconstructing Ancestral Gene Orders Using Conserved Intervals
-
A. Bergeron, M. Blanchette, A. Chateau, and C. Chauve, "Reconstructing Ancestral Gene Orders Using Conserved Intervals," Proc. Fourth Int'l Workshop Algorithms in Bioinformatics (WABI '04), pp. 14-25, 2004.
-
(2004)
Proc. Fourth Int'l Workshop Algorithms in Bioinformatics (WABI '04)
, pp. 14-25
-
-
Bergeron, A.1
Blanchette, M.2
Chateau, A.3
Chauve, C.4
-
6
-
-
15344349176
-
On the Properties of Sequences of Reversals that Sort a Signed Permutation
-
June
-
A. Bergeron, C. Chauve, T. Hartman, and K. St-Onge, "On the Properties of Sequences of Reversals that Sort a Signed Permutation," Proc. Journées Ouvertes Biologie, Informatique, Mathématiques (JOBIM '02), pp. 99-108, June 2002.
-
(2002)
Proc. Journées Ouvertes Biologie, Informatique, Mathématiques (JOBIM '02)
, pp. 99-108
-
-
Bergeron, A.1
Chauve, C.2
Hartman, T.3
St-Onge, K.4
-
7
-
-
27144431950
-
Computing Common Intervals of K Permutations, with Applications to Modular Decomposition of Graphs
-
A. Bergeron, C. Chauve, F. de Montgolfier, and M. Raffinot, "Computing Common Intervals of K Permutations, with Applications to Modular Decomposition of Graphs," Proc. 13th Ann. European Symp. Algorithms (ESA '05), pp. 779-790, 2005.
-
(2005)
Proc. 13th Ann. European Symp. Algorithms (ESA '05)
, pp. 779-790
-
-
Bergeron, A.1
Chauve, C.2
de Montgolfier, F.3
Raffinot, M.4
-
8
-
-
26444560785
-
The Inversion Distance Problem
-
O. Gascuel, ed, pp, Oxford Univ. Press
-
A. Bergeron, J. Mixtacki, and J. Stoye, "The Inversion Distance Problem," Math. Evolution and Phylogeny, O. Gascuel, ed., pp. 262-290, Oxford Univ. Press, 2005.
-
(2005)
Math. Evolution and Phylogeny
, pp. 262-290
-
-
Bergeron, A.1
Mixtacki, J.2
Stoye, J.3
-
9
-
-
0036143403
-
Genome-Scale Evolution: Reconstructing Gene Orders in the Ancestral Species
-
G. Bourque and P.A. Pevzner, "Genome-Scale Evolution: Reconstructing Gene Orders in the Ancestral Species," Genome Research, vol. 12, no. 1, pp. 26-36, 2002.
-
(2002)
Genome Research
, vol.12
, Issue.1
, pp. 26-36
-
-
Bourque, G.1
Pevzner, P.A.2
-
10
-
-
12744263078
-
Comparative Architectures of Mammalian and Chicken Genomes Reveal Highly Variables Rates of Genomic Rearrangements across Different Lineages
-
G. Bourque, E.M. Zdobnov, P. Bork, P.A. Pevzner, and G. Tesler, "Comparative Architectures of Mammalian and Chicken Genomes Reveal Highly Variables Rates of Genomic Rearrangements across Different Lineages," Genome Research, vol. 15, no. 1, pp. 98-110, 2005.
-
(2005)
Genome Research
, vol.15
, Issue.1
, pp. 98-110
-
-
Bourque, G.1
Zdobnov, E.M.2
Bork, P.3
Pevzner, P.A.4
Tesler, G.5
-
11
-
-
1842768393
-
Reconstructing the Genomic Architecture of Ancestral Mammals: Lessons from Human, Mouse, and Rat Genomes
-
G. Bourque, P.A. Pevzner, and G. Tesler, "Reconstructing the Genomic Architecture of Ancestral Mammals: Lessons from Human, Mouse, and Rat Genomes," Genome Research, vol, 14, no. 4, pp. 507-516, 2004.
-
(2004)
Genome Research
, vol.14
, Issue.4
, pp. 507-516
-
-
Bourque, G.1
Pevzner, P.A.2
Tesler, G.3
-
12
-
-
33744949039
-
Revisiting Uno and Yagiura's Algorithm
-
B.M.B. Xuan, M. Habib, and C. Paul, "Revisiting Uno and Yagiura's Algorithm," Proc. Int'l Symp. Algorithms and Computation (ISAAC '05), pp. 146-155, 2005.
-
(2005)
Proc. Int'l Symp. Algorithms and Computation (ISAAC '05)
, pp. 146-155
-
-
Xuan, B.M.B.1
Habib, M.2
Paul, C.3
-
14
-
-
0007064674
-
Partitive Hypergraphs
-
M. Chein, M. Habib, and M.-C. Maurer, "Partitive Hypergraphs," Discrete Math., no. 37, pp. 35-50, 1981.
-
(1981)
Discrete Math
, Issue.37
, pp. 35-50
-
-
Chein, M.1
Habib, M.2
Maurer, M.-C.3
-
15
-
-
0012657153
-
Efficient and Practical Algorithm for Sequential Modular Decomposition Algorithm
-
E. Dahlhaus, J. Gustedt, and R. McConnell, "Efficient and Practical Algorithm for Sequential Modular Decomposition Algorithm," /. Algorithms, vol. 41, no. 2, pp. 360-387, 2001.
-
(2001)
Algorithms
, vol.41
, Issue.2
, pp. 360-387
-
-
Dahlhaus, E.1
Gustedt, J.2
McConnell, R.3
-
16
-
-
35048877602
-
Reversing Gene Erosion: Reconstructing Ancestral Bacterial Genomes from Gene-Content and Order Data
-
J.V. Earnest-DeYoung, E. Lerat, and B.M.E. Moret, "Reversing Gene Erosion: Reconstructing Ancestral Bacterial Genomes from Gene-Content and Order Data," Proc. Fourth Int'l Workshop Algorithms in Bioinformatics, (WABI '04), pp. 1-13, 2004.
-
(2004)
Proc. Fourth Int'l Workshop Algorithms in Bioinformatics, (WABI '04)
, pp. 1-13
-
-
Earnest-DeYoung, J.V.1
Lerat, E.2
Moret, B.M.E.3
-
18
-
-
1842684068
-
Genome Sequence of the Brown Norway Rat Yields Insights into Mammalian Evolution
-
R.A. Gibbs et al., "Genome Sequence of the Brown Norway Rat Yields Insights into Mammalian Evolution," Nature, vol. 428, no. 6982, pp. 493-521, 2004.
-
(2004)
Nature
, vol.428
, Issue.6982
, pp. 493-521
-
-
Gibbs, R.A.1
-
19
-
-
35048844276
-
A Simple Linear-Time Modular Decomposition Algorithm
-
M. Habib, F. de Montgolfier, and C. Paul, "A Simple Linear-Time Modular Decomposition Algorithm," Proc. Ninth Scandinavian Workshop Algorithm Theory (SWAT '04), pp. 187-198, 2004.
-
(2004)
Proc. Ninth Scandinavian Workshop Algorithm Theory (SWAT '04)
, pp. 187-198
-
-
Habib, M.1
de Montgolfier, F.2
Paul, C.3
-
20
-
-
0003934551
-
Partition Refinement: An Interesting Algorithmic Tool Kit
-
M. Habib, C. Paul, and L. Viennot, "Partition Refinement: An Interesting Algorithmic Tool Kit," Int'l J. Foundations of Computer Science, vol. 10, no. 2, pp. 147-170, 1999.
-
(1999)
Int'l J. Foundations of Computer Science
, vol.10
, Issue.2
, pp. 147-170
-
-
Habib, M.1
Paul, C.2
Viennot, L.3
-
21
-
-
0002856077
-
Transforming Cabbage into Turnip: Polynomial Algorithm for Sorting Signed Permutations by Reversals
-
S. Hannenhalli and P.A. Pevzner, "Transforming Cabbage into Turnip: Polynomial Algorithm for Sorting Signed Permutations by Reversals," /. ACM, vol. 46, no. 1, pp. 1-27, 1999.
-
(1999)
ACM
, vol.46
, Issue.1
, pp. 1-27
-
-
Hannenhalli, S.1
Pevzner, P.A.2
-
23
-
-
0033295439
-
A Faster and Simpler Algorithm for Sorting Signed Permutations by Reversals
-
H. Kaplan, R. Shamir, and R.E. Tarjan, "A Faster and Simpler Algorithm for Sorting Signed Permutations by Reversals," SIAM J. Computing, vol. 29, no, 3, pp. 880-892, 1999.
-
(1999)
SIAM J. Computing
, vol.29
, Issue.3
, pp. 880-892
-
-
Kaplan, H.1
Shamir, R.2
Tarjan, R.E.3
-
24
-
-
15344349566
-
Sorting Signed Permutations by Reversals Revisited
-
H. Kaplan and E. Verbin, "Sorting Signed Permutations by Reversals Revisited," J. Computing Systems Science, vol. 70, no. 3, pp. 321-341, 2005.
-
(2005)
J. Computing Systems Science
, vol.70
, Issue.3
, pp. 321-341
-
-
Kaplan, H.1
Verbin, E.2
-
25
-
-
26444544257
-
Using PQ Trees for Comparative Genomics
-
G.M. Landau, L. Parida, and O. Weimann, "Using PQ Trees for Comparative Genomics," Proc. 16th Ann. Symp. Combinatorial Pattern Matching (CPM '05), pp. 128-143, 2005.
-
(2005)
Proc. 16th Ann. Symp. Combinatorial Pattern Matching (CPM '05)
, pp. 128-143
-
-
Landau, G.M.1
Parida, L.2
Weimann, O.3
-
26
-
-
14544300681
-
A Bayesian Analysis of Metazoan Mitochondrial Genome Arrangements
-
B. Larget, D.L. Simon, J.B. Kadane, and D. Sweet, "A Bayesian Analysis of Metazoan Mitochondrial Genome Arrangements," Molecular Biology Evolution, vol. 22, no. 3, pp. 486-495, 2005.
-
(2005)
Molecular Biology Evolution
, vol.22
, Issue.3
, pp. 486-495
-
-
Larget, B.1
Simon, D.L.2
Kadane, J.B.3
Sweet, D.4
-
27
-
-
0034306448
-
Gene Context Conservation of a Highier Order than Operons
-
W.C. Lathe III, B. Snel, and P. Bork, "Gene Context Conservation of a Highier Order than Operons," Trends Biochemical Science, vol. 25, no. 10, pp. 474-479, 2000.
-
(2000)
Trends Biochemical Science
, vol.25
, Issue.10
, pp. 474-479
-
-
Lathe III, W.C.1
Snel, B.2
Bork, P.3
-
29
-
-
77957317999
-
Substitution Decomposition for Discrete Structures and Connections with Combinatorial Optimization
-
R.H. Möhring and F.J. Radermacher, "Substitution Decomposition for Discrete Structures and Connections with Combinatorial Optimization," Annals of Discrete Math., no. 19, pp. 257-356, 1984.
-
(1984)
Annals of Discrete Math
, Issue.19
, pp. 257-356
-
-
Möhring, R.H.1
Radermacher, F.J.2
-
30
-
-
33646194190
-
Décomposition Modulaire des Graphes. Theorie, Extensions et Algorithmes,
-
PhD thesis, Univ. Montpellier II, France
-
F. de Montgolfier, "Décomposition Modulaire des Graphes. Theorie, Extensions et Algorithmes," PhD thesis, Univ. Montpellier II, France, 2003.
-
(2003)
-
-
de Montgolfier, F.1
-
31
-
-
22744440499
-
Dynamics of Mammalian Chromosome Evolution Inferred from Multispecies Comparative Maps
-
W.J. Murphy et al., "Dynamics of Mammalian Chromosome Evolution Inferred from Multispecies Comparative Maps," Science, vol. 309, no. 5734, pp. 613-617, 2005.
-
(2005)
Science
, vol.309
, Issue.5734
, pp. 613-617
-
-
Murphy, W.J.1
-
32
-
-
0037264074
-
Genome Rearrangements in Mammalian Evolution: Lessons from Human and Mouse Genomes
-
P.A. Pevzner and G. Tesler, "Genome Rearrangements in Mammalian Evolution: Lessons from Human and Mouse Genomes," Genome Research, vol. 13, no. 1, pp. 37-45, 2003.
-
(2003)
Genome Research
, vol.13
, Issue.1
, pp. 37-45
-
-
Pevzner, P.A.1
Tesler, G.2
-
33
-
-
0038271921
-
Human and Mouse Genomic Sequences Reveal Extensive Breakpoint Reuse in Mammalian Evolution
-
Academy of Sciences USA, 100
-
P.A. Pevzner and G. Tesler, "Human and Mouse Genomic Sequences Reveal Extensive Breakpoint Reuse in Mammalian Evolution," Proc. Nat'1 Academy of Sciences USA, vol. 100, no. 13, pp. 7672-7677, 2003.
-
(2003)
Proc. Nat
, vol.1
, Issue.13
, pp. 7672-7677
-
-
Pevzner, P.A.1
Tesler, G.2
-
36
-
-
23844460187
-
Chromosomal Breakpoint Reuse in Genome Sequence Rearrangements
-
D. Sankoff and P. Trinh, "Chromosomal Breakpoint Reuse in Genome Sequence Rearrangements," J. Computational Biology, vol. 12, no. 6, pp. 812-821, 2005.
-
(2005)
J. Computational Biology
, vol.12
, Issue.6
, pp. 812-821
-
-
Sankoff, D.1
Trinh, P.2
-
39
-
-
0036211065
-
GRIMM: Genome Rearrangements Web Server
-
G. Tesler, "GRIMM: Genome Rearrangements Web Server," Bioinformatics, vol. 18, no. 3, pp. 492-493, 2002.
-
(2002)
Bioinformatics
, vol.18
, Issue.3
, pp. 492-493
-
-
Tesler, G.1
-
40
-
-
85142124898
-
-
P. Trinh, A. McLysaght, and D. Sankoff, Genomic Features in the Breakpoint Regions between Syntenic Blocks, Bioinformatics, 20, suppl. 1: (ISMB/ECCB '04: Proc. 12th Int'l Conf. Intelligent Systems for Molecular Biology/Third European Conf. Computational Biology), pp. i318-i325, 2004.
-
P. Trinh, A. McLysaght, and D. Sankoff, "Genomic Features in the Breakpoint Regions between Syntenic Blocks," Bioinformatics, vol. 20, suppl. 1: (ISMB/ECCB '04: Proc. 12th Int'l Conf. Intelligent Systems for Molecular Biology/Third European Conf. Computational Biology), pp. i318-i325, 2004.
-
-
-
-
41
-
-
1642392968
-
Fast Algorithms to Enumerate All Common Intervals of Two Permutations
-
T. Uno and M. Yagiura, "Fast Algorithms to Enumerate All Common Intervals of Two Permutations," Algorithmica, vol. 26, no. 2, pp. 290-309, 2000.
-
(2000)
Algorithmica
, vol.26
, Issue.2
, pp. 290-309
-
-
Uno, T.1
Yagiura, M.2
-
42
-
-
24044535485
-
Efficient Sorting of Genomic Permutations by Translocation, Inversion and Block Interchange
-
S. Yancopoulos, O. Attie, and S. Friedberg, "Efficient Sorting of Genomic Permutations by Translocation, Inversion and Block Interchange," Bioinformatics, vol. 21, no. 16, pp. 3340-3346, 2005.
-
(2005)
Bioinformatics
, vol.21
, Issue.16
, pp. 3340-3346
-
-
Yancopoulos, S.1
Attie, O.2
Friedberg, S.3
|