메뉴 건너뛰기




Volumn 4, Issue 1, 2007, Pages 4-16

Perfect sorting by reversals is not always difficult

Author keywords

Common intervals; Evolution scenarios; Reversals

Indexed keywords

ALGORITHMS; COMBINATORIAL MATHEMATICS; COMPUTATION THEORY; POLYNOMIALS; PROBLEM SOLVING;

EID: 33847756694     PISSN: 15455963     EISSN: None     Source Type: Journal    
DOI: 10.1109/TCBB.2007.1011     Document Type: Conference Paper
Times cited : (49)

References (42)
  • 1
    • 33750299522 scopus 로고    scopus 로고
    • Common Intervals and Symmetric Difference in a Model-Free Phylogenomics, with an Application to Streptophyte Evolution
    • Z. Adam, M. Turmel, C. Lemieux, and D. Sankoff, "Common Intervals and Symmetric Difference in a Model-Free Phylogenomics, with an Application to Streptophyte Evolution," Proc. Int'l Workshop Comparative Genomics (RCG '06), pp. 63-74, 2006.
    • (2006) Proc. Int'l Workshop Comparative Genomics (RCG '06) , pp. 63-74
    • Adam, Z.1    Turmel, M.2    Lemieux, C.3    Sankoff, D.4
  • 2
    • 0034767147 scopus 로고    scopus 로고
    • A Linear-Time Algorithm for Computing Inversion Distance between Signed Permutations with an Experimental Study
    • D.A. Bader, B.ME. Moret, and M. Yan, "A Linear-Time Algorithm for Computing Inversion Distance between Signed Permutations with an Experimental Study," J. Computational Biology, vol. 8, no. 5, pp. 483-491, 2001.
    • (2001) J. Computational Biology , vol.8 , Issue.5 , pp. 483-491
    • Bader, D.A.1    Moret, B.M.2    Yan, M.3
  • 3
    • 19544374490 scopus 로고    scopus 로고
    • Genome Rearrangement Distances and Gene Order Phylogeny in γ-Proteobacteria
    • E. Belda, A. Moya, and F.J. Silva, "Genome Rearrangement Distances and Gene Order Phylogeny in γ-Proteobacteria," Molecular Biology Evolution, vol. 22, no. 6, pp. 1456-1467, 2005.
    • (2005) Molecular Biology Evolution , vol.22 , Issue.6 , pp. 1456-1467
    • Belda, E.1    Moya, A.2    Silva, F.J.3
  • 8
    • 26444560785 scopus 로고    scopus 로고
    • The Inversion Distance Problem
    • O. Gascuel, ed, pp, Oxford Univ. Press
    • A. Bergeron, J. Mixtacki, and J. Stoye, "The Inversion Distance Problem," Math. Evolution and Phylogeny, O. Gascuel, ed., pp. 262-290, Oxford Univ. Press, 2005.
    • (2005) Math. Evolution and Phylogeny , pp. 262-290
    • Bergeron, A.1    Mixtacki, J.2    Stoye, J.3
  • 9
    • 0036143403 scopus 로고    scopus 로고
    • Genome-Scale Evolution: Reconstructing Gene Orders in the Ancestral Species
    • G. Bourque and P.A. Pevzner, "Genome-Scale Evolution: Reconstructing Gene Orders in the Ancestral Species," Genome Research, vol. 12, no. 1, pp. 26-36, 2002.
    • (2002) Genome Research , vol.12 , Issue.1 , pp. 26-36
    • Bourque, G.1    Pevzner, P.A.2
  • 10
    • 12744263078 scopus 로고    scopus 로고
    • Comparative Architectures of Mammalian and Chicken Genomes Reveal Highly Variables Rates of Genomic Rearrangements across Different Lineages
    • G. Bourque, E.M. Zdobnov, P. Bork, P.A. Pevzner, and G. Tesler, "Comparative Architectures of Mammalian and Chicken Genomes Reveal Highly Variables Rates of Genomic Rearrangements across Different Lineages," Genome Research, vol. 15, no. 1, pp. 98-110, 2005.
    • (2005) Genome Research , vol.15 , Issue.1 , pp. 98-110
    • Bourque, G.1    Zdobnov, E.M.2    Bork, P.3    Pevzner, P.A.4    Tesler, G.5
  • 11
    • 1842768393 scopus 로고    scopus 로고
    • Reconstructing the Genomic Architecture of Ancestral Mammals: Lessons from Human, Mouse, and Rat Genomes
    • G. Bourque, P.A. Pevzner, and G. Tesler, "Reconstructing the Genomic Architecture of Ancestral Mammals: Lessons from Human, Mouse, and Rat Genomes," Genome Research, vol, 14, no. 4, pp. 507-516, 2004.
    • (2004) Genome Research , vol.14 , Issue.4 , pp. 507-516
    • Bourque, G.1    Pevzner, P.A.2    Tesler, G.3
  • 15
    • 0012657153 scopus 로고    scopus 로고
    • Efficient and Practical Algorithm for Sequential Modular Decomposition Algorithm
    • E. Dahlhaus, J. Gustedt, and R. McConnell, "Efficient and Practical Algorithm for Sequential Modular Decomposition Algorithm," /. Algorithms, vol. 41, no. 2, pp. 360-387, 2001.
    • (2001) Algorithms , vol.41 , Issue.2 , pp. 360-387
    • Dahlhaus, E.1    Gustedt, J.2    McConnell, R.3
  • 18
    • 1842684068 scopus 로고    scopus 로고
    • Genome Sequence of the Brown Norway Rat Yields Insights into Mammalian Evolution
    • R.A. Gibbs et al., "Genome Sequence of the Brown Norway Rat Yields Insights into Mammalian Evolution," Nature, vol. 428, no. 6982, pp. 493-521, 2004.
    • (2004) Nature , vol.428 , Issue.6982 , pp. 493-521
    • Gibbs, R.A.1
  • 20
    • 0003934551 scopus 로고    scopus 로고
    • Partition Refinement: An Interesting Algorithmic Tool Kit
    • M. Habib, C. Paul, and L. Viennot, "Partition Refinement: An Interesting Algorithmic Tool Kit," Int'l J. Foundations of Computer Science, vol. 10, no. 2, pp. 147-170, 1999.
    • (1999) Int'l J. Foundations of Computer Science , vol.10 , Issue.2 , pp. 147-170
    • Habib, M.1    Paul, C.2    Viennot, L.3
  • 21
    • 0002856077 scopus 로고    scopus 로고
    • Transforming Cabbage into Turnip: Polynomial Algorithm for Sorting Signed Permutations by Reversals
    • S. Hannenhalli and P.A. Pevzner, "Transforming Cabbage into Turnip: Polynomial Algorithm for Sorting Signed Permutations by Reversals," /. ACM, vol. 46, no. 1, pp. 1-27, 1999.
    • (1999) ACM , vol.46 , Issue.1 , pp. 1-27
    • Hannenhalli, S.1    Pevzner, P.A.2
  • 23
    • 0033295439 scopus 로고    scopus 로고
    • A Faster and Simpler Algorithm for Sorting Signed Permutations by Reversals
    • H. Kaplan, R. Shamir, and R.E. Tarjan, "A Faster and Simpler Algorithm for Sorting Signed Permutations by Reversals," SIAM J. Computing, vol. 29, no, 3, pp. 880-892, 1999.
    • (1999) SIAM J. Computing , vol.29 , Issue.3 , pp. 880-892
    • Kaplan, H.1    Shamir, R.2    Tarjan, R.E.3
  • 24
    • 15344349566 scopus 로고    scopus 로고
    • Sorting Signed Permutations by Reversals Revisited
    • H. Kaplan and E. Verbin, "Sorting Signed Permutations by Reversals Revisited," J. Computing Systems Science, vol. 70, no. 3, pp. 321-341, 2005.
    • (2005) J. Computing Systems Science , vol.70 , Issue.3 , pp. 321-341
    • Kaplan, H.1    Verbin, E.2
  • 26
    • 14544300681 scopus 로고    scopus 로고
    • A Bayesian Analysis of Metazoan Mitochondrial Genome Arrangements
    • B. Larget, D.L. Simon, J.B. Kadane, and D. Sweet, "A Bayesian Analysis of Metazoan Mitochondrial Genome Arrangements," Molecular Biology Evolution, vol. 22, no. 3, pp. 486-495, 2005.
    • (2005) Molecular Biology Evolution , vol.22 , Issue.3 , pp. 486-495
    • Larget, B.1    Simon, D.L.2    Kadane, J.B.3    Sweet, D.4
  • 27
    • 0034306448 scopus 로고    scopus 로고
    • Gene Context Conservation of a Highier Order than Operons
    • W.C. Lathe III, B. Snel, and P. Bork, "Gene Context Conservation of a Highier Order than Operons," Trends Biochemical Science, vol. 25, no. 10, pp. 474-479, 2000.
    • (2000) Trends Biochemical Science , vol.25 , Issue.10 , pp. 474-479
    • Lathe III, W.C.1    Snel, B.2    Bork, P.3
  • 29
    • 77957317999 scopus 로고
    • Substitution Decomposition for Discrete Structures and Connections with Combinatorial Optimization
    • R.H. Möhring and F.J. Radermacher, "Substitution Decomposition for Discrete Structures and Connections with Combinatorial Optimization," Annals of Discrete Math., no. 19, pp. 257-356, 1984.
    • (1984) Annals of Discrete Math , Issue.19 , pp. 257-356
    • Möhring, R.H.1    Radermacher, F.J.2
  • 30
    • 33646194190 scopus 로고    scopus 로고
    • Décomposition Modulaire des Graphes. Theorie, Extensions et Algorithmes,
    • PhD thesis, Univ. Montpellier II, France
    • F. de Montgolfier, "Décomposition Modulaire des Graphes. Theorie, Extensions et Algorithmes," PhD thesis, Univ. Montpellier II, France, 2003.
    • (2003)
    • de Montgolfier, F.1
  • 31
    • 22744440499 scopus 로고    scopus 로고
    • Dynamics of Mammalian Chromosome Evolution Inferred from Multispecies Comparative Maps
    • W.J. Murphy et al., "Dynamics of Mammalian Chromosome Evolution Inferred from Multispecies Comparative Maps," Science, vol. 309, no. 5734, pp. 613-617, 2005.
    • (2005) Science , vol.309 , Issue.5734 , pp. 613-617
    • Murphy, W.J.1
  • 32
    • 0037264074 scopus 로고    scopus 로고
    • Genome Rearrangements in Mammalian Evolution: Lessons from Human and Mouse Genomes
    • P.A. Pevzner and G. Tesler, "Genome Rearrangements in Mammalian Evolution: Lessons from Human and Mouse Genomes," Genome Research, vol. 13, no. 1, pp. 37-45, 2003.
    • (2003) Genome Research , vol.13 , Issue.1 , pp. 37-45
    • Pevzner, P.A.1    Tesler, G.2
  • 33
    • 0038271921 scopus 로고    scopus 로고
    • Human and Mouse Genomic Sequences Reveal Extensive Breakpoint Reuse in Mammalian Evolution
    • Academy of Sciences USA, 100
    • P.A. Pevzner and G. Tesler, "Human and Mouse Genomic Sequences Reveal Extensive Breakpoint Reuse in Mammalian Evolution," Proc. Nat'1 Academy of Sciences USA, vol. 100, no. 13, pp. 7672-7677, 2003.
    • (2003) Proc. Nat , vol.1 , Issue.13 , pp. 7672-7677
    • Pevzner, P.A.1    Tesler, G.2
  • 36
    • 23844460187 scopus 로고    scopus 로고
    • Chromosomal Breakpoint Reuse in Genome Sequence Rearrangements
    • D. Sankoff and P. Trinh, "Chromosomal Breakpoint Reuse in Genome Sequence Rearrangements," J. Computational Biology, vol. 12, no. 6, pp. 812-821, 2005.
    • (2005) J. Computational Biology , vol.12 , Issue.6 , pp. 812-821
    • Sankoff, D.1    Trinh, P.2
  • 39
    • 0036211065 scopus 로고    scopus 로고
    • GRIMM: Genome Rearrangements Web Server
    • G. Tesler, "GRIMM: Genome Rearrangements Web Server," Bioinformatics, vol. 18, no. 3, pp. 492-493, 2002.
    • (2002) Bioinformatics , vol.18 , Issue.3 , pp. 492-493
    • Tesler, G.1
  • 40
    • 85142124898 scopus 로고    scopus 로고
    • P. Trinh, A. McLysaght, and D. Sankoff, Genomic Features in the Breakpoint Regions between Syntenic Blocks, Bioinformatics, 20, suppl. 1: (ISMB/ECCB '04: Proc. 12th Int'l Conf. Intelligent Systems for Molecular Biology/Third European Conf. Computational Biology), pp. i318-i325, 2004.
    • P. Trinh, A. McLysaght, and D. Sankoff, "Genomic Features in the Breakpoint Regions between Syntenic Blocks," Bioinformatics, vol. 20, suppl. 1: (ISMB/ECCB '04: Proc. 12th Int'l Conf. Intelligent Systems for Molecular Biology/Third European Conf. Computational Biology), pp. i318-i325, 2004.
  • 41
    • 1642392968 scopus 로고    scopus 로고
    • Fast Algorithms to Enumerate All Common Intervals of Two Permutations
    • T. Uno and M. Yagiura, "Fast Algorithms to Enumerate All Common Intervals of Two Permutations," Algorithmica, vol. 26, no. 2, pp. 290-309, 2000.
    • (2000) Algorithmica , vol.26 , Issue.2 , pp. 290-309
    • Uno, T.1    Yagiura, M.2
  • 42
    • 24044535485 scopus 로고    scopus 로고
    • Efficient Sorting of Genomic Permutations by Translocation, Inversion and Block Interchange
    • S. Yancopoulos, O. Attie, and S. Friedberg, "Efficient Sorting of Genomic Permutations by Translocation, Inversion and Block Interchange," Bioinformatics, vol. 21, no. 16, pp. 3340-3346, 2005.
    • (2005) Bioinformatics , vol.21 , Issue.16 , pp. 3340-3346
    • Yancopoulos, S.1    Attie, O.2    Friedberg, S.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.