메뉴 건너뛰기




Volumn 29, Issue 3, 2000, Pages 880-892

A faster and simpler algorithm for sorting signed permutations by reversals

Author keywords

Computational molecular biology; Reversal distance; Sorting permutations

Indexed keywords

DATA STRUCTURES; FUNCTIONS; MATHEMATICAL TRANSFORMATIONS; PROBLEM SOLVING;

EID: 0033295439     PISSN: 00975397     EISSN: None     Source Type: Journal    
DOI: 10.1137/S0097539798334207     Document Type: Article
Times cited : (136)

References (26)
  • 1
    • 0001680003 scopus 로고
    • Zum hilbertshen aufbau der reelen zahlen
    • W. ACKERMANN, Zum hilbertshen aufbau der reelen zahlen, Math. Ann., 99 (1928), pp. 118-133.
    • (1928) Math. Ann. , vol.99 , pp. 118-133
    • Ackermann, W.1
  • 3
    • 0030130366 scopus 로고    scopus 로고
    • Genome rearragements and sorting by reversals
    • V. BAFNA AND P. A. PEVZNER, Genome rearragements and sorting by reversals, SIAM J. Comput., 25 (1996), pp. 272-289.
    • (1996) SIAM J. Comput. , vol.25 , pp. 272-289
    • Bafna, V.1    Pevzner, P.A.2
  • 5
    • 84957634698 scopus 로고    scopus 로고
    • Fast sorting by reversals
    • Combinatorial Pattern Matching, Springer, Berlin
    • P. BERMAN AND S. HANNENHALLI, Fast sorting by reversals, in Combinatorial Pattern Matching, Lecture Notes in Comput. Sci. 1075, Springer, Berlin, 1996, pp. 168-185.
    • (1996) Lecture Notes in Comput. Sci. , vol.1075 , pp. 168-185
    • Berman, P.1    Hannenhalli, S.2
  • 8
    • 0002835359 scopus 로고
    • Inversions in the chromosomes of Drosophila pseudoobscura
    • T. DOBZHANSKY AND A. H. STURTEVANT, Inversions in the chromosomes of Drosophila pseudoobscura, Genetics, 23 (1938), pp. 28-64.
    • (1938) Genetics , vol.23 , pp. 28-64
    • Dobzhansky, T.1    Sturtevant, A.H.2
  • 10
    • 0000320128 scopus 로고    scopus 로고
    • Polynomial algorithm for computing translocation distance between genomes
    • S. HANNENHALLI, Polynomial algorithm for computing translocation distance between genomes, Discrete Appl. Math., 71 (1996), pp. 137-151.
    • (1996) Discrete Appl. Math. , vol.71 , pp. 137-151
    • Hannenhalli, S.1
  • 12
    • 0001807019 scopus 로고
    • Transforming cabbage into turnip (polynomial algorithm for sorting signed permutations by reversals)
    • Las Vegas, NV
    • S. HANNENHALLI AND P. A. PEVZNER, Transforming cabbage into turnip (polynomial algorithm for sorting signed permutations by reversals), in Proceedings of the 27th annual ACM Symposium on Theory of Computing, Las Vegas, NV, 1995, pp. 178-189.
    • (1995) Proceedings of the 27th Annual ACM Symposium on Theory of Computing , pp. 178-189
    • Hannenhalli, S.1    Pevzner, P.A.2
  • 13
    • 0028296307 scopus 로고
    • Structural rearrangements, including parallel inversions, within the chloroplast genome of Anemone and related genera
    • S. B. HOOT AND J. D. PALMER, Structural rearrangements, including parallel inversions, within the chloroplast genome of Anemone and related genera, J. Molecular Evolution, 38 (1994), pp. 274-281.
    • (1994) J. Molecular Evolution , vol.38 , pp. 274-281
    • Hoot, S.B.1    Palmer, J.D.2
  • 17
    • 84896575459 scopus 로고
    • Efficient bounds for oriented chromosome inversion distance
    • Proceedings of the 5th Annual Symposium on Combinatorial Pattern Matching, Springer, Berlin
    • J. KECECIOGLU AND D. SANKOFF, Efficient bounds for oriented chromosome inversion distance, in Proceedings of the 5th Annual Symposium on Combinatorial Pattern Matching, Lecture Notes in Comput. Sci. 807, Springer, Berlin, 1994, pp. 307-325.
    • (1994) Lecture Notes in Comput. Sci. , vol.807 , pp. 307-325
    • Kececioglu, J.1    Sankoff, D.2
  • 18
    • 0029185212 scopus 로고
    • Exact and approximation algorithms for sorting by reversals, with application to genome rearrangement
    • J. KECECIOGLU AND D. SANKOFF, Exact and approximation algorithms for sorting by reversals, with application to genome rearrangement, Algorithmica, 13 (1995), pp. 180-210.
    • (1995) Algorithmica , vol.13 , pp. 180-210
    • Kececioglu, J.1    Sankoff, D.2
  • 19
    • 33748360747 scopus 로고
    • Springer, Berlin
    • A preliminary version appeared in Proceedings CPM 93, Springer, Berlin, 1993, pp. 87-105 .
    • (1993) Proceedings CPM , vol.93 , pp. 87-105
  • 20
    • 0023055362 scopus 로고
    • Tricircular mitochondrial genomes of Brassica and Raphanus: Reversal of repeat configurations by inversion
    • J. D. PALMER AND L. A. HERBON, Tricircular mitochondrial genomes of Brassica and Raphanus: reversal of repeat configurations by inversion, Nucleid Acids Research, 14 (1986), pp. 9755-9764.
    • (1986) Nucleid Acids Research , vol.14 , pp. 9755-9764
    • Palmer, J.D.1    Herbon, L.A.2
  • 21
    • 0023476739 scopus 로고
    • Unicircular structure of the Brassica hirta mitochondrial genome
    • J. D. PALMER AND L. A. HERBON, Unicircular structure of the Brassica hirta mitochondrial genome, Current Genetics, 11 (1987), pp. 565-570.
    • (1987) Current Genetics , vol.11 , pp. 565-570
    • Palmer, J.D.1    Herbon, L.A.2
  • 22
    • 0024259002 scopus 로고
    • Plant mitochondrial DNA evolves rapidly in structure, but slowly in sequence
    • J. D. PALMER AND L. A. HERBON, Plant mitochondrial DNA evolves rapidly in structure, but slowly in sequence, J. Molecular Evolution, 28 (1988), pp. 87-97.
    • (1988) J. Molecular Evolution , vol.28 , pp. 87-97
    • Palmer, J.D.1    Herbon, L.A.2
  • 23
    • 0002468106 scopus 로고
    • Evolutionalry significance of inversions in legume chloroplast DNAs
    • J. D. PALMER, B. OSORIO, AND W. THOMPSON, Evolutionalry significance of inversions in legume chloroplast DNAs, Current Genetics, 14 (1988), pp. 65-74.
    • (1988) Current Genetics , vol.14 , pp. 65-74
    • Palmer, J.D.1    Osorio, B.2    Thompson, W.3
  • 24
    • 84957615807 scopus 로고
    • Edit distance for genome comparison based on nonlocal operations
    • Combinatorial Pattern Matching, Springer, Berlin
    • D. SANKOFF, Edit distance for genome comparison based on nonlocal operations, in Combinatorial Pattern Matching, Lecture Notes in Comput. Sci. 644, Springer, Berlin, 1992, pp. 121-135.
    • (1992) Lecture Notes in Comput. Sci. , vol.644 , pp. 121-135
    • Sankoff, D.1
  • 25
    • 0025304689 scopus 로고
    • Genomic divergence through gene rearrangement
    • D. SANKOFF, R. CEDERGREN, AND Y. ABEL, Genomic divergence through gene rearrangement., Methods in Enzymology, 183 (1990), pp. 428-438.
    • (1990) Methods in Enzymology , vol.183 , pp. 428-438
    • Sankoff, D.1    Cedergren, R.2    Abel, Y.3
  • 26
    • 0016495233 scopus 로고
    • Efficiency of a good but not linear set union algorithm
    • R. E. TARJAN, Efficiency of a good but not linear set union algorithm, J. ACM, 22 (1979), pp. 215-225.
    • (1979) J. ACM , vol.22 , pp. 215-225
    • Tarjan, R.E.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.